data_6FMF # _model_server_result.job_id 1g4j4NT682lkGXL0Wkrrxg _model_server_result.datetime_utc '2024-10-22 03:34:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6FMF # _exptl.entry_id 6FMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.667 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[[3-[[5-[4-(aminomethyl)phenyl]-1-benzofuran-7-yl]sulfonylamino]thiophen-2-yl]carbonylamino]-5-carbamimidamido-pentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FMF _cell.length_a 39.655 _cell.length_b 39.655 _cell.length_c 91.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 6 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 275 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 155 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 424 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H28 N6 O6 S2' _chem_comp.formula_weight 584.667 _chem_comp.id DUE _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[[3-[[5-[4-(aminomethyl)phenyl]-1-benzofuran-7-yl]sulfonylamino]thiophen-2-yl]carbonylamino]-5-carbamimidamido-pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 DUE doub 83 n y C14 O2 DUE sing 84 n y C15 C12 DUE sing 85 n y O2 C13 DUE sing 86 n y C12 C13 DUE doub 87 n y C12 C11 DUE sing 88 n y C13 C1 DUE sing 89 n y C11 C3 DUE doub 90 n y C1 C2 DUE doub 91 n y C1 S1 DUE sing 92 n n C3 C2 DUE sing 93 n y C3 C4 DUE sing 94 n n O6 S1 DUE doub 95 n n O1 S1 DUE doub 96 n n C5 C4 DUE doub 97 n y C5 C6 DUE sing 98 n y S1 N2 DUE sing 99 n n C4 C10 DUE sing 100 n y C6 C7 DUE doub 101 n y N2 C16 DUE sing 102 n n C10 C9 DUE doub 103 n y C19 C16 DUE sing 104 n y C19 C18 DUE doub 105 n y C7 C9 DUE sing 106 n y C7 C8 DUE sing 107 n n C16 C17 DUE doub 108 n y N1 C8 DUE sing 109 n n C18 S2 DUE sing 110 n y C17 S2 DUE sing 111 n y C17 C20 DUE sing 112 n n O3 C26 DUE doub 113 n n N3 C20 DUE sing 114 n n N3 C21 DUE sing 115 n n C20 O5 DUE doub 116 n n C22 C21 DUE sing 117 n n C22 C23 DUE sing 118 n n C26 C21 DUE sing 119 n n C26 O4 DUE sing 120 n n C23 C24 DUE sing 121 n n C24 N4 DUE sing 122 n n N4 C25 DUE sing 123 n n C25 N5 DUE doub 124 n n C25 N6 DUE sing 125 n n C14 H1 DUE sing 126 n n C15 H2 DUE sing 127 n n C11 H3 DUE sing 128 n n C10 H4 DUE sing 129 n n C9 H5 DUE sing 130 n n C8 H6 DUE sing 131 n n C8 H7 DUE sing 132 n n N1 H8 DUE sing 133 n n N1 H9 DUE sing 134 n n C6 H11 DUE sing 135 n n C5 H12 DUE sing 136 n n C2 H13 DUE sing 137 n n N2 H14 DUE sing 138 n n C19 H15 DUE sing 139 n n C18 H16 DUE sing 140 n n N3 H17 DUE sing 141 n n C21 H18 DUE sing 142 n n O4 H19 DUE sing 143 n n C22 H20 DUE sing 144 n n C22 H21 DUE sing 145 n n C23 H22 DUE sing 146 n n C23 H23 DUE sing 147 n n C24 H24 DUE sing 148 n n C24 H25 DUE sing 149 n n N4 H26 DUE sing 150 n n N6 H27 DUE sing 151 n n N6 H28 DUE sing 152 n n N5 H29 DUE sing 153 n n # _atom_sites.entry_id 6FMF _atom_sites.fract_transf_matrix[1][1] 0.025217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DUE A 1 501 1 DUE TSY . C 3 TFA A 1 502 1 TFA TFA . D 4 HOH A 1 601 6 HOH HOH . D 4 HOH A 2 602 9 HOH HOH . D 4 HOH A 3 603 4 HOH HOH . D 4 HOH A 4 604 3 HOH HOH . D 4 HOH A 5 605 7 HOH HOH . D 4 HOH A 6 606 5 HOH HOH . D 4 HOH A 7 607 1 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 2 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S2 DUE . . . B 2 15.835 21.537 15.456 1 32.16 ? S2 DUE 501 A 1 HETATM 2 S S1 DUE . . . B 2 11.37 19.278 16.608 1 40.08 ? S1 DUE 501 A 1 HETATM 3 O O6 DUE . . . B 2 10.209 18.89 15.868 1 37.71 ? O6 DUE 501 A 1 HETATM 4 O O1 DUE . . . B 2 12.184 18.098 16.773 1 44.93 ? O1 DUE 501 A 1 HETATM 5 C C1 DUE . . . B 2 10.971 19.839 18.046 1 40.93 ? C1 DUE 501 A 1 HETATM 6 C C13 DUE . . . B 2 10.16 19.14 18.91 1 42.59 ? C13 DUE 501 A 1 HETATM 7 O O2 DUE . . . B 2 9.602 17.921 18.686 1 40.78 ? O2 DUE 501 A 1 HETATM 8 C C14 DUE . . . B 2 8.909 17.462 19.851 1 37.78 ? C14 DUE 501 A 1 HETATM 9 C C15 DUE . . . B 2 8.931 18.644 20.835 1 34.23 ? C15 DUE 501 A 1 HETATM 10 C C12 DUE . . . B 2 9.821 19.63 20.132 1 39.34 ? C12 DUE 501 A 1 HETATM 11 C C11 DUE . . . B 2 10.277 20.862 20.579 1 35.46 ? C11 DUE 501 A 1 HETATM 12 C C3 DUE . . . B 2 11.099 21.582 19.716 1 37.84 ? C3 DUE 501 A 1 HETATM 13 C C4 DUE . . . B 2 11.677 22.907 20.064 1 39.54 ? C4 DUE 501 A 1 HETATM 14 C C10 DUE . . . B 2 11.279 23.665 21.163 1 42.28 ? C10 DUE 501 A 1 HETATM 15 C C9 DUE . . . B 2 11.889 24.893 21.417 1 42.25 ? C9 DUE 501 A 1 HETATM 16 C C7 DUE . . . B 2 12.889 25.361 20.568 1 40.65 ? C7 DUE 501 A 1 HETATM 17 C C8 DUE . . . B 2 13.572 26.679 20.811 1 34.78 ? C8 DUE 501 A 1 HETATM 18 N N1 DUE . . . B 2 12.55 27.727 20.962 1 33.56 ? N1 DUE 501 A 1 HETATM 19 C C6 DUE . . . B 2 13.291 24.605 19.483 1 44.63 ? C6 DUE 501 A 1 HETATM 20 C C5 DUE . . . B 2 12.683 23.385 19.237 1 39.69 ? C5 DUE 501 A 1 HETATM 21 C C2 DUE . . . B 2 11.443 21.07 18.47 1 41.63 ? C2 DUE 501 A 1 HETATM 22 N N2 DUE . . . B 2 12.145 20.394 15.75 1 38.01 ? N2 DUE 501 A 1 HETATM 23 C C16 DUE . . . B 2 13.465 20.608 15.945 1 40.52 ? C16 DUE 501 A 1 HETATM 24 C C19 DUE . . . B 2 14.29 20.17 16.989 1 38.16 ? C19 DUE 501 A 1 HETATM 25 C C18 DUE . . . B 2 15.619 20.576 16.896 1 35.62 ? C18 DUE 501 A 1 HETATM 26 C C17 DUE . . . B 2 14.202 21.442 14.945 1 40.2 ? C17 DUE 501 A 1 HETATM 27 C C20 DUE . . . B 2 13.824 22.131 13.686 1 40.95 ? C20 DUE 501 A 1 HETATM 28 O O5 DUE . . . B 2 14.69 22.485 12.891 1 38.79 ? O5 DUE 501 A 1 HETATM 29 N N3 DUE . . . B 2 12.559 22.355 13.439 1 36.85 ? N3 DUE 501 A 1 HETATM 30 C C21 DUE . . . B 2 12.261 22.52 12.036 1 33.3 ? C21 DUE 501 A 1 HETATM 31 C C26 DUE . . . B 2 11.96 23.956 11.747 1 32.93 ? C26 DUE 501 A 1 HETATM 32 O O4 DUE . . . B 2 11.581 24.677 12.653 1 32.27 ? O4 DUE 501 A 1 HETATM 33 O O3 DUE . . . B 2 12.151 24.457 10.532 1 35.88 ? O3 DUE 501 A 1 HETATM 34 C C22 DUE . . . B 2 11.185 21.527 11.621 1 33.21 ? C22 DUE 501 A 1 HETATM 35 C C23 DUE . . . B 2 11.784 20.43 10.748 1 33.8 ? C23 DUE 501 A 1 HETATM 36 C C24 DUE . . . B 2 11.555 20.75 9.277 1 33.17 ? C24 DUE 501 A 1 HETATM 37 N N4 DUE . . . B 2 12.29 19.865 8.4 1 30.99 ? N4 DUE 501 A 1 HETATM 38 C C25 DUE . . . B 2 11.964 19.786 7.113 1 33.59 ? C25 DUE 501 A 1 HETATM 39 N N6 DUE . . . B 2 11.372 20.741 6.547 1 36.09 ? N6 DUE 501 A 1 HETATM 40 N N5 DUE . . . B 2 12.243 18.687 6.421 1 33.87 ? N5 DUE 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #