data_6FMI # _model_server_result.job_id M61hY9mpVc1s-J4D9UHWwA _model_server_result.datetime_utc '2024-12-21 12:10:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 6FMI # _exptl.entry_id 6FMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.586 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2~{S})-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamothioyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-propan-2-yl]ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FMI _cell.length_a 63.972 _cell.length_b 69.863 _cell.length_c 356.939 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,J,K 1 1 D,E,F,H,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 59 A GLU 59 1_555 A N CAS 60 A CAS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CAS 60 A CAS 60 1_555 A N GLY 61 A GLY 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C LEU 88 A LEU 88 1_555 A N CAS 89 A CAS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C CAS 89 A CAS 89 1_555 A N ILE 90 A ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 C C PHE 25 C PHE 76 1_555 C N CAS 26 C CAS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 C C CAS 26 C CAS 77 1_555 C N ASN 27 C ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 D C GLU 59 D GLU 59 1_555 D N CAS 60 D CAS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 D C CAS 60 D CAS 60 1_555 D N GLY 61 D GLY 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 D C LEU 88 D LEU 88 1_555 D N CAS 89 D CAS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 D C CAS 89 D CAS 89 1_555 D N ILE 90 D ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 F C PHE 25 F PHE 76 1_555 F N CAS 26 F CAS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 F C CAS 26 F CAS 77 1_555 F N ASN 27 F ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C21 H26 N4 O3 S2' _chem_comp.formula_weight 446.586 _chem_comp.id DV2 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2~{S})-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamothioyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-propan-2-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAT DV2 sing 104 n n CAT OAD DV2 doub 105 n n CAT N DV2 sing 106 n n N CA DV2 sing 107 n n CB CA DV2 sing 108 n n CA C DV2 sing 109 n n C O DV2 doub 110 n n C NBD DV2 sing 111 n n CAO NBD DV2 sing 112 n n CAO CBA DV2 sing 113 n n NBD CBC DV2 sing 114 n n OAF CBA DV2 sing 115 n n CBA CAN DV2 sing 116 n n CBC CAV DV2 sing 117 n n CBC CAN DV2 sing 118 n n SAG CAV DV2 doub 119 n n CAV NAQ DV2 sing 120 n n NAQ CAM DV2 sing 121 n n CAM CAX DV2 sing 122 n n CAX CAI DV2 doub 123 n y CAX CAH DV2 sing 124 n y CAI CAK DV2 sing 125 n y CAH CAJ DV2 doub 126 n y CAK CAY DV2 doub 127 n y CAJ CAY DV2 sing 128 n y CAY CAZ DV2 sing 129 n n CAZ SAS DV2 sing 130 n y CAZ CAW DV2 doub 131 n y SAS CAL DV2 sing 132 n y CAW CAB DV2 sing 133 n n CAW NAP DV2 sing 134 n y CAL NAP DV2 doub 135 n y CAA H1 DV2 sing 136 n n CAA H2 DV2 sing 137 n n CAA H3 DV2 sing 138 n n N H4 DV2 sing 139 n n CA H5 DV2 sing 140 n n CB H6 DV2 sing 141 n n CB H7 DV2 sing 142 n n CB H8 DV2 sing 143 n n CAO H9 DV2 sing 144 n n CAO H10 DV2 sing 145 n n CBA H11 DV2 sing 146 n n OAF H12 DV2 sing 147 n n CAN H13 DV2 sing 148 n n CAN H14 DV2 sing 149 n n CBC H15 DV2 sing 150 n n NAQ H16 DV2 sing 151 n n CAM H17 DV2 sing 152 n n CAM H18 DV2 sing 153 n n CAI H19 DV2 sing 154 n n CAK H20 DV2 sing 155 n n CAH H21 DV2 sing 156 n n CAJ H22 DV2 sing 157 n n CAL H23 DV2 sing 158 n n CAB H24 DV2 sing 159 n n CAB H25 DV2 sing 160 n n CAB H26 DV2 sing 161 n n # _atom_sites.entry_id 6FMI _atom_sites.fract_transf_matrix[1][1] 0.015632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 DV2 C 1 301 2 DV2 DRG . H 4 DV2 F 1 301 1 DV2 DRG . I 5 HOH A 1 201 84 HOH HOH . I 5 HOH A 2 202 12 HOH HOH . I 5 HOH A 3 203 109 HOH HOH . I 5 HOH A 4 204 84 HOH HOH . I 5 HOH A 5 205 30 HOH HOH . I 5 HOH A 6 206 41 HOH HOH . I 5 HOH A 7 207 14 HOH HOH . I 5 HOH A 8 208 26 HOH HOH . I 5 HOH A 9 209 90 HOH HOH . I 5 HOH A 10 210 8 HOH HOH . I 5 HOH A 11 211 31 HOH HOH . I 5 HOH A 12 212 85 HOH HOH . I 5 HOH A 13 213 15 HOH HOH . I 5 HOH A 14 214 18 HOH HOH . I 5 HOH A 15 215 36 HOH HOH . I 5 HOH A 16 216 16 HOH HOH . I 5 HOH A 17 217 104 HOH HOH . I 5 HOH A 18 218 83 HOH HOH . I 5 HOH A 19 219 44 HOH HOH . I 5 HOH A 20 220 42 HOH HOH . I 5 HOH A 21 221 10 HOH HOH . I 5 HOH A 22 222 77 HOH HOH . I 5 HOH A 23 223 11 HOH HOH . I 5 HOH A 24 224 28 HOH HOH . I 5 HOH A 25 225 68 HOH HOH . I 5 HOH A 26 226 75 HOH HOH . I 5 HOH A 27 227 63 HOH HOH . I 5 HOH A 28 228 50 HOH HOH . I 5 HOH A 29 229 75 HOH HOH . I 5 HOH A 30 230 63 HOH HOH . I 5 HOH A 31 231 56 HOH HOH . I 5 HOH A 32 232 10 HOH HOH . I 5 HOH A 33 233 1 HOH HOH . I 5 HOH A 34 234 40 HOH HOH . I 5 HOH A 35 235 62 HOH HOH . I 5 HOH A 36 236 11 HOH HOH . I 5 HOH A 37 237 52 HOH HOH . I 5 HOH A 38 238 7 HOH HOH . I 5 HOH A 39 239 14 HOH HOH . I 5 HOH A 40 240 72 HOH HOH . I 5 HOH A 41 241 20 HOH HOH . I 5 HOH A 42 242 88 HOH HOH . I 5 HOH A 43 243 101 HOH HOH . I 5 HOH A 44 244 17 HOH HOH . I 5 HOH A 45 245 103 HOH HOH . J 5 HOH B 1 201 15 HOH HOH . J 5 HOH B 2 202 55 HOH HOH . J 5 HOH B 3 203 40 HOH HOH . J 5 HOH B 4 204 3 HOH HOH . J 5 HOH B 5 205 6 HOH HOH . J 5 HOH B 6 206 45 HOH HOH . J 5 HOH B 7 207 9 HOH HOH . J 5 HOH B 8 208 78 HOH HOH . J 5 HOH B 9 209 3 HOH HOH . J 5 HOH B 10 210 22 HOH HOH . J 5 HOH B 11 211 73 HOH HOH . J 5 HOH B 12 212 76 HOH HOH . J 5 HOH B 13 213 22 HOH HOH . J 5 HOH B 14 214 47 HOH HOH . J 5 HOH B 15 215 82 HOH HOH . J 5 HOH B 16 216 13 HOH HOH . J 5 HOH B 17 217 74 HOH HOH . J 5 HOH B 18 218 88 HOH HOH . J 5 HOH B 19 219 110 HOH HOH . K 5 HOH C 1 401 89 HOH HOH . K 5 HOH C 2 402 99 HOH HOH . K 5 HOH C 3 403 33 HOH HOH . K 5 HOH C 4 404 21 HOH HOH . K 5 HOH C 5 405 37 HOH HOH . K 5 HOH C 6 406 19 HOH HOH . K 5 HOH C 7 407 66 HOH HOH . K 5 HOH C 8 408 92 HOH HOH . K 5 HOH C 9 409 48 HOH HOH . K 5 HOH C 10 410 97 HOH HOH . K 5 HOH C 11 411 2 HOH HOH . K 5 HOH C 12 412 18 HOH HOH . K 5 HOH C 13 413 5 HOH HOH . K 5 HOH C 14 414 70 HOH HOH . K 5 HOH C 15 415 4 HOH HOH . L 5 HOH D 1 201 100 HOH HOH . L 5 HOH D 2 202 51 HOH HOH . L 5 HOH D 3 203 106 HOH HOH . L 5 HOH D 4 204 72 HOH HOH . L 5 HOH D 5 205 71 HOH HOH . L 5 HOH D 6 206 9 HOH HOH . L 5 HOH D 7 207 43 HOH HOH . L 5 HOH D 8 208 87 HOH HOH . L 5 HOH D 9 209 105 HOH HOH . L 5 HOH D 10 210 89 HOH HOH . M 5 HOH E 1 201 108 HOH HOH . M 5 HOH E 2 202 49 HOH HOH . M 5 HOH E 3 203 54 HOH HOH . M 5 HOH E 4 204 86 HOH HOH . M 5 HOH E 5 205 27 HOH HOH . M 5 HOH E 6 206 94 HOH HOH . M 5 HOH E 7 207 65 HOH HOH . M 5 HOH E 8 208 8 HOH HOH . M 5 HOH E 9 209 61 HOH HOH . M 5 HOH E 10 210 102 HOH HOH . M 5 HOH E 11 211 53 HOH HOH . M 5 HOH E 12 212 95 HOH HOH . M 5 HOH E 13 213 67 HOH HOH . M 5 HOH E 14 214 46 HOH HOH . N 5 HOH F 1 401 25 HOH HOH . N 5 HOH F 2 402 1 HOH HOH . N 5 HOH F 3 403 42 HOH HOH . N 5 HOH F 4 404 37 HOH HOH . N 5 HOH F 5 405 47 HOH HOH . N 5 HOH F 6 406 50 HOH HOH . N 5 HOH F 7 407 90 HOH HOH . N 5 HOH F 8 408 29 HOH HOH . N 5 HOH F 9 409 80 HOH HOH . N 5 HOH F 10 410 5 HOH HOH . N 5 HOH F 11 411 66 HOH HOH . N 5 HOH F 12 412 13 HOH HOH . N 5 HOH F 13 413 35 HOH HOH . N 5 HOH F 14 414 91 HOH HOH . N 5 HOH F 15 415 76 HOH HOH . N 5 HOH F 16 416 2 HOH HOH . N 5 HOH F 17 417 80 HOH HOH . N 5 HOH F 18 418 23 HOH HOH . N 5 HOH F 19 419 96 HOH HOH . N 5 HOH F 20 420 60 HOH HOH . N 5 HOH F 21 421 36 HOH HOH . N 5 HOH F 22 422 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA DV2 . . . H 4 -17.629 75.74 396.298 1 63.91 ? CAA DV2 301 F 1 HETATM 2 C CAT DV2 . . . H 4 -16.877 76.522 397.38 1 62.67 ? CAT DV2 301 F 1 HETATM 3 O OAD DV2 . . . H 4 -15.753 76.166 397.739 1 62.66 ? OAD DV2 301 F 1 HETATM 4 N N DV2 . . . H 4 -17.543 77.583 397.873 1 56.25 ? N DV2 301 F 1 HETATM 5 C CA DV2 . . . H 4 -16.98 78.454 398.921 1 53.5 ? CA DV2 301 F 1 HETATM 6 C CB DV2 . . . H 4 -17.608 79.846 398.811 1 50.75 ? CB DV2 301 F 1 HETATM 7 C C DV2 . . . H 4 -17.293 77.891 400.325 1 56.31 ? C DV2 301 F 1 HETATM 8 O O DV2 . . . H 4 -18.254 77.137 400.486 1 63.9 ? O DV2 301 F 1 HETATM 9 N NBD DV2 . . . H 4 -16.534 78.335 401.353 1 51.04 ? NBD DV2 301 F 1 HETATM 10 C CAO DV2 . . . H 4 -15.327 79.228 401.335 1 47.06 ? CAO DV2 301 F 1 HETATM 11 C CBA DV2 . . . H 4 -14.518 78.807 402.54 1 47.22 ? CBA DV2 301 F 1 HETATM 12 O OAF DV2 . . . H 4 -13.78 77.611 402.247 1 43.59 ? OAF DV2 301 F 1 HETATM 13 C CAN DV2 . . . H 4 -15.567 78.51 403.573 1 49.58 ? CAN DV2 301 F 1 HETATM 14 C CBC DV2 . . . H 4 -16.728 77.879 402.786 1 50.09 ? CBC DV2 301 F 1 HETATM 15 C CAV DV2 . . . H 4 -17.936 78.247 403.427 1 49.19 ? CAV DV2 301 F 1 HETATM 16 S SAG DV2 . . . H 4 -18.884 79.524 402.819 1 48.07 ? SAG DV2 301 F 1 HETATM 17 N NAQ DV2 . . . H 4 -18.205 77.597 404.579 1 47.15 ? NAQ DV2 301 F 1 HETATM 18 C CAM DV2 . . . H 4 -19.371 77.811 405.426 1 47.14 ? CAM DV2 301 F 1 HETATM 19 C CAX DV2 . . . H 4 -19.024 78.646 406.527 1 49.75 ? CAX DV2 301 F 1 HETATM 20 C CAI DV2 . . . H 4 -19.971 79.543 407.054 1 51.94 ? CAI DV2 301 F 1 HETATM 21 C CAK DV2 . . . H 4 -19.663 80.37 408.142 1 49.39 ? CAK DV2 301 F 1 HETATM 22 C CAH DV2 . . . H 4 -17.762 78.601 407.144 1 46.5 ? CAH DV2 301 F 1 HETATM 23 C CAJ DV2 . . . H 4 -17.461 79.428 408.229 1 46.16 ? CAJ DV2 301 F 1 HETATM 24 C CAY DV2 . . . H 4 -18.4 80.321 408.746 1 48.68 ? CAY DV2 301 F 1 HETATM 25 C CAZ DV2 . . . H 4 -18.08 81.089 409.806 1 54.86 ? CAZ DV2 301 F 1 HETATM 26 S SAS DV2 . . . H 4 -16.72 82.055 409.953 1 49.3 ? SAS DV2 301 F 1 HETATM 27 C CAL DV2 . . . H 4 -17.065 82.601 411.482 1 56.9 ? CAL DV2 301 F 1 HETATM 28 N NAP DV2 . . . H 4 -18.212 82.024 411.868 1 58.14 ? NAP DV2 301 F 1 HETATM 29 C CAW DV2 . . . H 4 -18.765 81.193 410.96 1 55.8 ? CAW DV2 301 F 1 HETATM 30 C CAB DV2 . . . H 4 -20.084 80.464 411.272 1 51.87 ? CAB DV2 301 F 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #