data_6FMO # _model_server_result.job_id F21_TmGeklKflxiqqY3O8g _model_server_result.datetime_utc '2024-10-14 05:23:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 6FMO # _exptl.entry_id 6FMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FMO _cell.length_a 154.31 _cell.length_b 154.31 _cell.length_c 178.876 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 1 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 422 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 B SG CYS 422 B CYS 422 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 C SG CYS 422 C CYS 422 1_555 I FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc4 D SG CYS 422 D CYS 422 1_555 K FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 213 n n CHA C4D HEM doub 214 n n CHA HHA HEM sing 215 n n CHB C4A HEM sing 216 n n CHB C1B HEM doub 217 n n CHB HHB HEM sing 218 n n CHC C4B HEM sing 219 n n CHC C1C HEM doub 220 n n CHC HHC HEM sing 221 n n CHD C4C HEM doub 222 n n CHD C1D HEM sing 223 n n CHD HHD HEM sing 224 n n C1A C2A HEM doub 225 n y C1A NA HEM sing 226 n y C2A C3A HEM sing 227 n y C2A CAA HEM sing 228 n n C3A C4A HEM doub 229 n y C3A CMA HEM sing 230 n n C4A NA HEM sing 231 n y CMA HMA HEM sing 232 n n CMA HMAA HEM sing 233 n n CMA HMAB HEM sing 234 n n CAA CBA HEM sing 235 n n CAA HAA HEM sing 236 n n CAA HAAA HEM sing 237 n n CBA CGA HEM sing 238 n n CBA HBA HEM sing 239 n n CBA HBAA HEM sing 240 n n CGA O1A HEM doub 241 n n CGA O2A HEM sing 242 n n C1B C2B HEM sing 243 n n C1B NB HEM sing 244 n n C2B C3B HEM doub 245 n n C2B CMB HEM sing 246 n n C3B C4B HEM sing 247 n n C3B CAB HEM sing 248 n n C4B NB HEM doub 249 n n CMB HMB HEM sing 250 n n CMB HMBA HEM sing 251 n n CMB HMBB HEM sing 252 n n CAB CBB HEM doub 253 n n CAB HAB HEM sing 254 n n CBB HBB HEM sing 255 n n CBB HBBA HEM sing 256 n n C1C C2C HEM sing 257 n y C1C NC HEM sing 258 n y C2C C3C HEM doub 259 n y C2C CMC HEM sing 260 n n C3C C4C HEM sing 261 n y C3C CAC HEM sing 262 n n C4C NC HEM sing 263 n y CMC HMC HEM sing 264 n n CMC HMCA HEM sing 265 n n CMC HMCB HEM sing 266 n n CAC CBC HEM doub 267 n n CAC HAC HEM sing 268 n n CBC HBC HEM sing 269 n n CBC HBCA HEM sing 270 n n C1D C2D HEM sing 271 n n C1D ND HEM doub 272 n n C2D C3D HEM doub 273 n n C2D CMD HEM sing 274 n n C3D C4D HEM sing 275 n n C3D CAD HEM sing 276 n n C4D ND HEM sing 277 n n CMD HMD HEM sing 278 n n CMD HMDA HEM sing 279 n n CMD HMDB HEM sing 280 n n CAD CBD HEM sing 281 n n CAD HAD HEM sing 282 n n CAD HADA HEM sing 283 n n CBD CGD HEM sing 284 n n CBD HBD HEM sing 285 n n CBD HBDA HEM sing 286 n n CGD O1D HEM doub 287 n n CGD O2D HEM sing 288 n n O2A H2A HEM sing 289 n n O2D H2D HEM sing 290 n n FE NA HEM sing 291 n n FE NB HEM sing 292 n n FE NC HEM sing 293 n n FE ND HEM sing 294 n n # _atom_sites.entry_id 6FMO _atom_sites.fract_transf_matrix[1][1] 0.00648 _atom_sites.fract_transf_matrix[1][2] 0.003741 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 501 1480 HEM HEM . F 3 DVE A 1 502 1 DVE OTL . G 2 HEM B 1 501 1480 HEM HEM . H 3 DVE B 1 502 1 DVE OTL . I 2 HEM C 1 501 1480 HEM HEM . J 3 DVE C 1 502 1 DVE OTL . K 2 HEM D 1 501 1480 HEM HEM . L 4 HOH D 1 601 2 HOH HOH . L 4 HOH D 2 602 1 HOH HOH . L 4 HOH D 3 603 4 HOH HOH . L 4 HOH D 4 604 3 HOH HOH . L 4 HOH D 5 605 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 -27.494 -21.738 57.286 1 91.44 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . G 2 -24.502 -24.611 54.753 1 73.09 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . G 2 -20.801 -21.666 55.912 1 84.71 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . G 2 -23.607 -19.574 59.256 1 84.04 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . G 2 -27.009 -22.727 56.448 1 82.49 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . G 2 -27.782 -23.734 55.832 1 73.28 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . G 2 -26.945 -24.52 55.104 1 79.69 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . G 2 -25.634 -24.049 55.325 1 81.15 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . G 2 -27.334 -25.688 54.232 1 79.31 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . G 2 -29.284 -23.832 55.816 1 82.55 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . G 2 -29.766 -24.929 56.767 1 95.61 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . G 2 -31.271 -24.885 56.839 1 123.62 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . G 2 -31.941 -24.57 55.83 1 134 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . G 2 -31.859 -25.143 57.913 1 137.63 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . G 2 -23.24 -24.008 54.825 1 77.15 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . G 2 -22.13 -24.448 54.053 1 77.9 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . G 2 -21.079 -23.629 54.35 1 76.53 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . G 2 -21.598 -22.657 55.34 1 75.83 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . G 2 -22.128 -25.598 53.079 1 90.12 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . G 2 -19.705 -23.657 53.813 1 89.61 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . G 2 -19.363 -24.413 52.773 1 92.3 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . G 2 -21.224 -20.848 56.958 1 88.05 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . G 2 -20.409 -19.954 57.675 1 92.04 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . G 2 -21.205 -19.354 58.639 1 95.42 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . G 2 -22.513 -19.888 58.488 1 89.21 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . G 2 -18.948 -19.687 57.412 1 95.68 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . G 2 -20.839 -18.321 59.626 1 100.83 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . G 2 -19.626 -17.781 59.665 1 102.02 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . G 2 -24.882 -20.022 58.902 1 97.5 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . G 2 -26.033 -19.43 59.586 1 101.15 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . G 2 -27.124 -20.04 59.09 1 100.62 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . G 2 -26.626 -20.929 58.023 1 92.73 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . G 2 -26.011 -18.394 60.68 1 106.21 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . G 2 -28.494 -19.576 59.521 1 108.96 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . G 2 -29.678 -20.506 59.261 1 123.81 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . G 2 -30.86 -19.939 60.011 1 135.43 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . G 2 -30.888 -18.725 60.319 1 116.13 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . G 2 -31.799 -20.681 60.378 1 122.38 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . G 2 -25.683 -23.026 56.248 1 79.97 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . G 2 -22.884 -22.951 55.561 1 81.34 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . G 2 -22.475 -20.867 57.533 1 82.81 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . G 2 -25.278 -20.922 57.99 1 94.59 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . G 2 -24.166 -21.885 56.836 1 93.65 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 101 _model_server_stats.query_time_ms 434 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #