data_6FMO
#
_model_server_result.job_id            wI3BZYCoQT10bSqGWhk9xw 
_model_server_result.datetime_utc      '2024-12-03 00:24:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fmo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    6FMO 
#
_exptl.entry_id    6FMO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6FMO 
_cell.length_a            154.31 
_cell.length_b            154.31 
_cell.length_c            178.876 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FMO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        151 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 1 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1 
B,G,H 2 1 
C,I,J 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 422 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc2 B SG CYS 422 B CYS 422 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc3 C SG CYS 422 C CYS 422 1_555 I FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc4 D SG CYS 422 D CYS 422 1_555 K FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 213 n n 
CHA C4D HEM doub 214 n n 
CHA HHA HEM sing 215 n n 
CHB C4A HEM sing 216 n n 
CHB C1B HEM doub 217 n n 
CHB HHB HEM sing 218 n n 
CHC C4B HEM sing 219 n n 
CHC C1C HEM doub 220 n n 
CHC HHC HEM sing 221 n n 
CHD C4C HEM doub 222 n n 
CHD C1D HEM sing 223 n n 
CHD HHD HEM sing 224 n n 
C1A C2A HEM doub 225 n y 
C1A NA HEM sing 226 n y 
C2A C3A HEM sing 227 n y 
C2A CAA HEM sing 228 n n 
C3A C4A HEM doub 229 n y 
C3A CMA HEM sing 230 n n 
C4A NA HEM sing 231 n y 
CMA HMA HEM sing 232 n n 
CMA HMAA HEM sing 233 n n 
CMA HMAB HEM sing 234 n n 
CAA CBA HEM sing 235 n n 
CAA HAA HEM sing 236 n n 
CAA HAAA HEM sing 237 n n 
CBA CGA HEM sing 238 n n 
CBA HBA HEM sing 239 n n 
CBA HBAA HEM sing 240 n n 
CGA O1A HEM doub 241 n n 
CGA O2A HEM sing 242 n n 
C1B C2B HEM sing 243 n n 
C1B NB HEM sing 244 n n 
C2B C3B HEM doub 245 n n 
C2B CMB HEM sing 246 n n 
C3B C4B HEM sing 247 n n 
C3B CAB HEM sing 248 n n 
C4B NB HEM doub 249 n n 
CMB HMB HEM sing 250 n n 
CMB HMBA HEM sing 251 n n 
CMB HMBB HEM sing 252 n n 
CAB CBB HEM doub 253 n n 
CAB HAB HEM sing 254 n n 
CBB HBB HEM sing 255 n n 
CBB HBBA HEM sing 256 n n 
C1C C2C HEM sing 257 n y 
C1C NC HEM sing 258 n y 
C2C C3C HEM doub 259 n y 
C2C CMC HEM sing 260 n n 
C3C C4C HEM sing 261 n y 
C3C CAC HEM sing 262 n n 
C4C NC HEM sing 263 n y 
CMC HMC HEM sing 264 n n 
CMC HMCA HEM sing 265 n n 
CMC HMCB HEM sing 266 n n 
CAC CBC HEM doub 267 n n 
CAC HAC HEM sing 268 n n 
CBC HBC HEM sing 269 n n 
CBC HBCA HEM sing 270 n n 
C1D C2D HEM sing 271 n n 
C1D ND HEM doub 272 n n 
C2D C3D HEM doub 273 n n 
C2D CMD HEM sing 274 n n 
C3D C4D HEM sing 275 n n 
C3D CAD HEM sing 276 n n 
C4D ND HEM sing 277 n n 
CMD HMD HEM sing 278 n n 
CMD HMDA HEM sing 279 n n 
CMD HMDB HEM sing 280 n n 
CAD CBD HEM sing 281 n n 
CAD HAD HEM sing 282 n n 
CAD HADA HEM sing 283 n n 
CBD CGD HEM sing 284 n n 
CBD HBD HEM sing 285 n n 
CBD HBDA HEM sing 286 n n 
CGD O1D HEM doub 287 n n 
CGD O2D HEM sing 288 n n 
O2A H2A HEM sing 289 n n 
O2D H2D HEM sing 290 n n 
FE NA HEM sing 291 n n 
FE NB HEM sing 292 n n 
FE NC HEM sing 293 n n 
FE ND HEM sing 294 n n 
#
_atom_sites.entry_id                     6FMO 
_atom_sites.fract_transf_matrix[1][1]    0.00648 
_atom_sites.fract_transf_matrix[1][2]    0.003741 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00559 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 501 1480 HEM HEM . 
F 3 DVE A 1 502 1 DVE OTL . 
G 2 HEM B 1 501 1480 HEM HEM . 
H 3 DVE B 1 502 1 DVE OTL . 
I 2 HEM C 1 501 1480 HEM HEM . 
J 3 DVE C 1 502 1 DVE OTL . 
K 2 HEM D 1 501 1480 HEM HEM . 
L 4 HOH D 1 601 2 HOH HOH . 
L 4 HOH D 2 602 1 HOH HOH . 
L 4 HOH D 3 603 4 HOH HOH . 
L 4 HOH D 4 604 3 HOH HOH . 
L 4 HOH D 5 605 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 2 27.905 -66.558 57.62 1 114.26 ? CHA HEM 501 D 1 
HETATM 2 C CHB HEM . . . K 2 25.603 -63.136 55.081 1 103.23 ? CHB HEM 501 D 1 
HETATM 3 C CHC HEM . . . K 2 21.384 -65.353 56.101 1 110.86 ? CHC HEM 501 D 1 
HETATM 4 C CHD HEM . . . K 2 23.652 -67.863 59.57 1 105.28 ? CHD HEM 501 D 1 
HETATM 5 C C1A HEM . . . K 2 27.646 -65.517 56.753 1 91.8 ? C1A HEM 501 D 1 
HETATM 6 C C2A HEM . . . K 2 28.624 -64.749 56.09 1 86.47 ? C2A HEM 501 D 1 
HETATM 7 C C3A HEM . . . K 2 27.974 -63.815 55.348 1 93.78 ? C3A HEM 501 D 1 
HETATM 8 C C4A HEM . . . K 2 26.598 -63.924 55.642 1 101.76 ? C4A HEM 501 D 1 
HETATM 9 C CMA HEM . . . K 2 28.62 -62.793 54.447 1 101.45 ? CMA HEM 501 D 1 
HETATM 10 C CAA HEM . . . K 2 30.099 -65.052 56.044 1 89.5 ? CAA HEM 501 D 1 
HETATM 11 C CBA HEM . . . K 2 30.924 -63.939 56.691 1 90.72 ? CBA HEM 501 D 1 
HETATM 12 C CGA HEM . . . K 2 32.37 -64.361 56.725 1 102.96 ? CGA HEM 501 D 1 
HETATM 13 O O1A HEM . . . K 2 32.89 -64.904 55.725 1 129.6 ? O1A HEM 501 D 1 
HETATM 14 O O2A HEM . . . K 2 33.054 -64.163 57.754 1 101.2 ? O2A HEM 501 D 1 
HETATM 15 C C1B HEM . . . K 2 24.245 -63.482 55.123 1 100.44 ? C1B HEM 501 D 1 
HETATM 16 C C2B HEM . . . K 2 23.257 -62.823 54.341 1 103.06 ? C2B HEM 501 D 1 
HETATM 17 C C3B HEM . . . K 2 22.062 -63.431 54.607 1 100.68 ? C3B HEM 501 D 1 
HETATM 18 C C4B HEM . . . K 2 22.363 -64.506 55.579 1 98.75 ? C4B HEM 501 D 1 
HETATM 19 C CMB HEM . . . K 2 23.5 -61.665 53.406 1 103.07 ? CMB HEM 501 D 1 
HETATM 20 C CAB HEM . . . K 2 20.728 -63.145 54.046 1 108.79 ? CAB HEM 501 D 1 
HETATM 21 C CBB HEM . . . K 2 20.565 -62.357 52.986 1 133.96 ? CBB HEM 501 D 1 
HETATM 22 C C1C HEM . . . K 2 21.618 -66.24 57.15 1 117.99 ? C1C HEM 501 D 1 
HETATM 23 C C2C HEM . . . K 2 20.638 -67.005 57.805 1 113.41 ? C2C HEM 501 D 1 
HETATM 24 C C3C HEM . . . K 2 21.279 -67.724 58.803 1 116.85 ? C3C HEM 501 D 1 
HETATM 25 C C4C HEM . . . K 2 22.659 -67.387 58.746 1 106.43 ? C4C HEM 501 D 1 
HETATM 26 C CMC HEM . . . K 2 19.18 -67.079 57.42 1 103.36 ? CMC HEM 501 D 1 
HETATM 27 C CAC HEM . . . K 2 20.693 -68.702 59.739 1 136.01 ? CAC HEM 501 D 1 
HETATM 28 C CBC HEM . . . K 2 19.414 -69.058 59.677 1 147.1 ? CBC HEM 501 D 1 
HETATM 29 C C1D HEM . . . K 2 25.001 -67.682 59.248 1 122.72 ? C1D HEM 501 D 1 
HETATM 30 C C2D HEM . . . K 2 26.027 -68.455 59.962 1 151.44 ? C2D HEM 501 D 1 
HETATM 31 C C3D HEM . . . K 2 27.204 -68.136 59.389 1 136.67 ? C3D HEM 501 D 1 
HETATM 32 C C4D HEM . . . K 2 26.88 -67.135 58.364 1 123.2 ? C4D HEM 501 D 1 
HETATM 33 C CMD HEM . . . K 2 25.818 -69.433 61.091 1 165.08 ? CMD HEM 501 D 1 
HETATM 34 C CAD HEM . . . K 2 28.574 -68.566 59.849 1 120.45 ? CAD HEM 501 D 1 
HETATM 35 C CBD HEM . . . K 2 29.25 -69.501 58.843 1 128.57 ? CBD HEM 501 D 1 
HETATM 36 C CGD HEM . . . K 2 30.659 -69.799 59.296 1 135.3 ? CGD HEM 501 D 1 
HETATM 37 O O1D HEM . . . K 2 31.368 -70.611 58.661 1 114.02 ? O1D HEM 501 D 1 
HETATM 38 O O2D HEM . . . K 2 31.13 -69.237 60.31 1 136.38 ? O2D HEM 501 D 1 
HETATM 39 N NA HEM . . . K 2 26.415 -64.949 56.544 1 95.34 ? NA HEM 501 D 1 
HETATM 40 N NB HEM . . . K 2 23.675 -64.458 55.832 1 99.8 ? NB HEM 501 D 1 
HETATM 41 N NC HEM . . . K 2 22.832 -66.451 57.763 1 112.13 ? NC HEM 501 D 1 
HETATM 42 N ND HEM . . . K 2 25.56 -66.898 58.314 1 111.22 ? ND HEM 501 D 1 
HETATM 43 FE FE HEM . . . K 2 24.698 -65.793 57.083 1 114.28 ? FE HEM 501 D 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    102 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           43 
#