data_6FMW # _model_server_result.job_id Yu8Z-3qDK9pzjft7f3ULMw _model_server_result.datetime_utc '2024-11-23 20:25:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6FMW # _exptl.entry_id 6FMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FMW _cell.length_a 114.06 _cell.length_b 145.13 _cell.length_c 39.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 147 A CYS 138 1_555 C HG HG . A HG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc2 A O CYS 171 A CYS 162 1_555 B HG HG . A HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc3 A SG CYS 171 A CYS 162 1_555 B HG HG . A HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc4 A SG CYS 174 A CYS 165 1_555 B HG HG . A HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 6FMW _atom_sites.fract_transf_matrix[1][1] 0.008767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HG A 1 301 1 HG HG . C 2 HG A 1 302 2 HG HG . D 3 TRS A 1 303 1 TRS TRS . E 4 OLC A 1 304 2 OLC OLC . F 4 OLC A 1 305 3 OLC OLC . G 5 HOH A 1 401 3 HOH HOH . G 5 HOH A 2 402 2 HOH HOH . G 5 HOH A 3 403 5 HOH HOH . G 5 HOH A 4 404 1 HOH HOH . G 5 HOH A 5 405 4 HOH HOH . G 5 HOH A 6 406 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . E 4 29.183 26.007 11.758 1 62.21 ? C18 OLC 304 A 1 HETATM 2 C C10 OLC . . . E 4 22.642 21.813 7.587 1 44.86 ? C10 OLC 304 A 1 HETATM 3 C C9 OLC . . . E 4 21.541 21.259 7.042 1 41.13 ? C9 OLC 304 A 1 HETATM 4 C C17 OLC . . . E 4 28.994 25.164 10.515 1 53.13 ? C17 OLC 304 A 1 HETATM 5 C C11 OLC . . . E 4 22.528 22.726 8.789 1 49.5 ? C11 OLC 304 A 1 HETATM 6 C C8 OLC . . . E 4 20.179 21.545 7.634 1 45.84 ? C8 OLC 304 A 1 HETATM 7 C C24 OLC . . . E 4 10.078 24.811 6.814 1 93.43 ? C24 OLC 304 A 1 HETATM 8 C C16 OLC . . . E 4 27.628 25.431 9.921 1 52.96 ? C16 OLC 304 A 1 HETATM 9 C C12 OLC . . . E 4 23.71 22.485 9.702 1 46.25 ? C12 OLC 304 A 1 HETATM 10 C C7 OLC . . . E 4 19.289 22.157 6.577 1 58.82 ? C7 OLC 304 A 1 HETATM 11 C C15 OLC . . . E 4 26.565 24.692 10.705 1 58.31 ? C15 OLC 304 A 1 HETATM 12 C C13 OLC . . . E 4 24.318 23.805 10.121 1 46.97 ? C13 OLC 304 A 1 HETATM 13 C C6 OLC . . . E 4 17.926 22.417 7.176 1 61.6 ? C6 OLC 304 A 1 HETATM 14 C C14 OLC . . . E 4 25.788 23.801 9.761 1 52.26 ? C14 OLC 304 A 1 HETATM 15 C C5 OLC . . . E 4 17.841 23.856 7.633 1 58.9 ? C5 OLC 304 A 1 HETATM 16 C C4 OLC . . . E 4 17.448 24.737 6.467 1 65.08 ? C4 OLC 304 A 1 HETATM 17 C C3 OLC . . . E 4 15.987 25.113 6.585 1 68.98 ? C3 OLC 304 A 1 HETATM 18 C C2 OLC . . . E 4 15.791 26.544 6.132 1 67.26 ? C2 OLC 304 A 1 HETATM 19 C C21 OLC . . . E 4 12.349 25.794 6.572 1 77.51 ? C21 OLC 304 A 1 HETATM 20 C C1 OLC . . . E 4 14.343 26.731 5.74 1 82.22 ? C1 OLC 304 A 1 HETATM 21 C C22 OLC . . . E 4 11.151 25.242 5.84 1 78.74 ? C22 OLC 304 A 1 HETATM 22 O O19 OLC . . . E 4 13.926 27.825 5.414 1 82.34 ? O19 OLC 304 A 1 HETATM 23 O O25 OLC . . . E 4 8.922 25.596 6.617 1 104.41 ? O25 OLC 304 A 1 HETATM 24 O O23 OLC . . . E 4 10.643 26.246 4.993 1 88.63 ? O23 OLC 304 A 1 HETATM 25 O O20 OLC . . . E 4 13.479 25.626 5.75 1 78.66 ? O20 OLC 304 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #