data_6FN5 # _model_server_result.job_id b_LNxSQMbNFmd5rPxylDaA _model_server_result.datetime_utc '2024-11-12 20:51:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6FN5 # _exptl.entry_id 6FN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.52 _cell.angle_gamma 90 _cell.entry_id 6FN5 _cell.length_a 49.425 _cell.length_b 69.888 _cell.length_c 59.452 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 164 A THR 158 1_555 A N CME 165 A CME 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CME 165 A CME 159 1_555 A N ASP 166 A ASP 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 104 n n S C1 DMS sing 105 n n S C2 DMS sing 106 n n C1 H11 DMS sing 107 n n C1 H12 DMS sing 108 n n C1 H13 DMS sing 109 n n C2 H21 DMS sing 110 n n C2 H22 DMS sing 111 n n C2 H23 DMS sing 112 n n # _atom_sites.entry_id 6FN5 _atom_sites.fract_transf_matrix[1][1] 0.020233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007173 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DVZ A 1 401 1 DVZ Z8S . C 3 DMS A 1 402 4 DMS DMS . D 3 DMS A 1 403 14 DMS DMS . E 4 SO4 A 1 404 1 SO4 SO4 . F 5 HOH A 1 501 539 HOH HOH . F 5 HOH A 2 502 16 HOH HOH . F 5 HOH A 3 503 54 HOH HOH . F 5 HOH A 4 504 605 HOH HOH . F 5 HOH A 5 505 599 HOH HOH . F 5 HOH A 6 506 555 HOH HOH . F 5 HOH A 7 507 594 HOH HOH . F 5 HOH A 8 508 20 HOH HOH . F 5 HOH A 9 509 88 HOH HOH . F 5 HOH A 10 510 409 HOH HOH . F 5 HOH A 11 511 37 HOH HOH . F 5 HOH A 12 512 565 HOH HOH . F 5 HOH A 13 513 21 HOH HOH . F 5 HOH A 14 514 2 HOH HOH . F 5 HOH A 15 515 38 HOH HOH . F 5 HOH A 16 516 570 HOH HOH . F 5 HOH A 17 517 598 HOH HOH . F 5 HOH A 18 518 6 HOH HOH . F 5 HOH A 19 519 327 HOH HOH . F 5 HOH A 20 520 91 HOH HOH . F 5 HOH A 21 521 554 HOH HOH . F 5 HOH A 22 522 353 HOH HOH . F 5 HOH A 23 523 2 HOH HOH . F 5 HOH A 24 524 31 HOH HOH . F 5 HOH A 25 525 2 HOH HOH . F 5 HOH A 26 526 557 HOH HOH . F 5 HOH A 27 527 370 HOH HOH . F 5 HOH A 28 528 170 HOH HOH . F 5 HOH A 29 529 98 HOH HOH . F 5 HOH A 30 530 14 HOH HOH . F 5 HOH A 31 531 36 HOH HOH . F 5 HOH A 32 532 82 HOH HOH . F 5 HOH A 33 533 535 HOH HOH . F 5 HOH A 34 534 520 HOH HOH . F 5 HOH A 35 535 72 HOH HOH . F 5 HOH A 36 536 12 HOH HOH . F 5 HOH A 37 537 223 HOH HOH . F 5 HOH A 38 538 376 HOH HOH . F 5 HOH A 39 539 5 HOH HOH . F 5 HOH A 40 540 129 HOH HOH . F 5 HOH A 41 541 28 HOH HOH . F 5 HOH A 42 542 124 HOH HOH . F 5 HOH A 43 543 15 HOH HOH . F 5 HOH A 44 544 450 HOH HOH . F 5 HOH A 45 545 333 HOH HOH . F 5 HOH A 46 546 14 HOH HOH . F 5 HOH A 47 547 27 HOH HOH . F 5 HOH A 48 548 92 HOH HOH . F 5 HOH A 49 549 418 HOH HOH . F 5 HOH A 50 550 35 HOH HOH . F 5 HOH A 51 551 87 HOH HOH . F 5 HOH A 52 552 10 HOH HOH . F 5 HOH A 53 553 11 HOH HOH . F 5 HOH A 54 554 567 HOH HOH . F 5 HOH A 55 555 133 HOH HOH . F 5 HOH A 56 556 10 HOH HOH . F 5 HOH A 57 557 26 HOH HOH . F 5 HOH A 58 558 576 HOH HOH . F 5 HOH A 59 559 559 HOH HOH . F 5 HOH A 60 560 51 HOH HOH . F 5 HOH A 61 561 8 HOH HOH . F 5 HOH A 62 562 20 HOH HOH . F 5 HOH A 63 563 26 HOH HOH . F 5 HOH A 64 564 41 HOH HOH . F 5 HOH A 65 565 40 HOH HOH . F 5 HOH A 66 566 55 HOH HOH . F 5 HOH A 67 567 126 HOH HOH . F 5 HOH A 68 568 6 HOH HOH . F 5 HOH A 69 569 584 HOH HOH . F 5 HOH A 70 570 1 HOH HOH . F 5 HOH A 71 571 22 HOH HOH . F 5 HOH A 72 572 551 HOH HOH . F 5 HOH A 73 573 123 HOH HOH . F 5 HOH A 74 574 2 HOH HOH . F 5 HOH A 75 575 83 HOH HOH . F 5 HOH A 76 576 580 HOH HOH . F 5 HOH A 77 577 39 HOH HOH . F 5 HOH A 78 578 13 HOH HOH . F 5 HOH A 79 579 18 HOH HOH . F 5 HOH A 80 580 572 HOH HOH . F 5 HOH A 81 581 574 HOH HOH . F 5 HOH A 82 582 1 HOH HOH . F 5 HOH A 83 583 387 HOH HOH . F 5 HOH A 84 584 19 HOH HOH . F 5 HOH A 85 585 189 HOH HOH . F 5 HOH A 86 586 171 HOH HOH . F 5 HOH A 87 587 69 HOH HOH . F 5 HOH A 88 588 372 HOH HOH . F 5 HOH A 89 589 560 HOH HOH . F 5 HOH A 90 590 3 HOH HOH . F 5 HOH A 91 591 175 HOH HOH . F 5 HOH A 92 592 583 HOH HOH . F 5 HOH A 93 593 61 HOH HOH . F 5 HOH A 94 594 123 HOH HOH . F 5 HOH A 95 595 31 HOH HOH . F 5 HOH A 96 596 23 HOH HOH . F 5 HOH A 97 597 329 HOH HOH . F 5 HOH A 98 598 381 HOH HOH . F 5 HOH A 99 599 476 HOH HOH . F 5 HOH A 100 600 41 HOH HOH . F 5 HOH A 101 601 106 HOH HOH . F 5 HOH A 102 602 543 HOH HOH . F 5 HOH A 103 603 573 HOH HOH . F 5 HOH A 104 604 8 HOH HOH . F 5 HOH A 105 605 56 HOH HOH . F 5 HOH A 106 606 511 HOH HOH . F 5 HOH A 107 607 32 HOH HOH . F 5 HOH A 108 608 21 HOH HOH . F 5 HOH A 109 609 24 HOH HOH . F 5 HOH A 110 610 153 HOH HOH . F 5 HOH A 111 611 132 HOH HOH . F 5 HOH A 112 612 1 HOH HOH . F 5 HOH A 113 613 63 HOH HOH . F 5 HOH A 114 614 361 HOH HOH . F 5 HOH A 115 615 39 HOH HOH . F 5 HOH A 116 616 597 HOH HOH . F 5 HOH A 117 617 550 HOH HOH . F 5 HOH A 118 618 363 HOH HOH . F 5 HOH A 119 619 569 HOH HOH . F 5 HOH A 120 620 143 HOH HOH . F 5 HOH A 121 621 421 HOH HOH . F 5 HOH A 122 622 88 HOH HOH . F 5 HOH A 123 623 595 HOH HOH . F 5 HOH A 124 624 526 HOH HOH . F 5 HOH A 125 625 603 HOH HOH . F 5 HOH A 126 626 23 HOH HOH . F 5 HOH A 127 627 45 HOH HOH . F 5 HOH A 128 628 57 HOH HOH . F 5 HOH A 129 629 94 HOH HOH . F 5 HOH A 130 630 30 HOH HOH . F 5 HOH A 131 631 7 HOH HOH . F 5 HOH A 132 632 348 HOH HOH . F 5 HOH A 133 633 196 HOH HOH . F 5 HOH A 134 634 553 HOH HOH . F 5 HOH A 135 635 10 HOH HOH . F 5 HOH A 136 636 44 HOH HOH . F 5 HOH A 137 637 295 HOH HOH . F 5 HOH A 138 638 588 HOH HOH . F 5 HOH A 139 639 552 HOH HOH . F 5 HOH A 140 640 3 HOH HOH . F 5 HOH A 141 641 563 HOH HOH . F 5 HOH A 142 642 257 HOH HOH . F 5 HOH A 143 643 48 HOH HOH . F 5 HOH A 144 644 2 HOH HOH . F 5 HOH A 145 645 66 HOH HOH . F 5 HOH A 146 646 52 HOH HOH . F 5 HOH A 147 647 568 HOH HOH . F 5 HOH A 148 648 556 HOH HOH . F 5 HOH A 149 649 586 HOH HOH . F 5 HOH A 150 650 587 HOH HOH . F 5 HOH A 151 651 9 HOH HOH . F 5 HOH A 152 652 70 HOH HOH . F 5 HOH A 153 653 602 HOH HOH . F 5 HOH A 154 654 523 HOH HOH . F 5 HOH A 155 655 540 HOH HOH . F 5 HOH A 156 656 272 HOH HOH . F 5 HOH A 157 657 545 HOH HOH . F 5 HOH A 158 658 544 HOH HOH . F 5 HOH A 159 659 90 HOH HOH . F 5 HOH A 160 660 600 HOH HOH . F 5 HOH A 161 661 558 HOH HOH . F 5 HOH A 162 662 44 HOH HOH . F 5 HOH A 163 663 117 HOH HOH . F 5 HOH A 164 664 110 HOH HOH . F 5 HOH A 165 665 546 HOH HOH . F 5 HOH A 166 666 341 HOH HOH . F 5 HOH A 167 667 519 HOH HOH . F 5 HOH A 168 668 130 HOH HOH . F 5 HOH A 169 669 99 HOH HOH . F 5 HOH A 170 670 601 HOH HOH . F 5 HOH A 171 671 138 HOH HOH . F 5 HOH A 172 672 585 HOH HOH . F 5 HOH A 173 673 541 HOH HOH . F 5 HOH A 174 674 302 HOH HOH . F 5 HOH A 175 675 596 HOH HOH . F 5 HOH A 176 676 141 HOH HOH . F 5 HOH A 177 677 101 HOH HOH . F 5 HOH A 178 678 339 HOH HOH . F 5 HOH A 179 679 108 HOH HOH . F 5 HOH A 180 680 566 HOH HOH . F 5 HOH A 181 681 549 HOH HOH . F 5 HOH A 182 682 25 HOH HOH . F 5 HOH A 183 683 606 HOH HOH . F 5 HOH A 184 684 378 HOH HOH . F 5 HOH A 185 685 590 HOH HOH . F 5 HOH A 186 686 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -17.523 19.912 61.622 1 91.27 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 -16.88 21.262 61.611 1 91.16 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 -17.126 19.039 63.162 1 91.21 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 -19.319 20.089 61.819 1 91.31 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #