data_6FN9 # _model_server_result.job_id 28qV03uTUiWqD_t-NtwkRA _model_server_result.datetime_utc '2024-11-08 16:34:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6FN9 # _exptl.entry_id 6FN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 595.578 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-[2-oxidanylidene-2-[[3-[2-[2-[2-[3-oxidanylidene-3-(propylamino)propoxy]ethoxy]ethoxy]ethylcarbamoyl]phenyl]amino]ethoxy]phenyl]phosphonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FN9 _cell.length_a 71.94 _cell.length_b 102.42 _cell.length_c 113.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C27 H38 N3 O10 P' _chem_comp.formula_weight 595.578 _chem_comp.id DW8 _chem_comp.mon_nstd_flag . _chem_comp.name '[2-[2-oxidanylidene-2-[[3-[2-[2-[2-[3-oxidanylidene-3-(propylamino)propoxy]ethoxy]ethoxy]ethylcarbamoyl]phenyl]amino]ethoxy]phenyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ CAK DW8 doub 98 n y CAJ CAL DW8 sing 99 n y CAK CBK DW8 sing 100 n y OAC CBI DW8 doub 101 n n CAL CBL DW8 doub 102 n y CBI CAZ DW8 sing 103 n n CBI NBC DW8 sing 104 n n CBK NBC DW8 sing 105 n n CBK CAO DW8 doub 106 n y CAZ OBG DW8 sing 107 n n CBL CAO DW8 sing 108 n y CBL CBJ DW8 sing 109 n n OBG CBM DW8 sing 110 n n NBB CBJ DW8 sing 111 n n NBB CAR DW8 sing 112 n n CBJ OAD DW8 doub 113 n n CAR CAS DW8 sing 114 n n OAF PBO DW8 doub 115 n n CBM CAM DW8 doub 116 n y CBM CBN DW8 sing 117 n y CAM CAH DW8 sing 118 n y CAV OBE DW8 sing 119 n n CAV CAW DW8 sing 120 n n CAU CAT DW8 sing 121 n n CAU OBE DW8 sing 122 n n CAT OBD DW8 sing 123 n n OAG PBO DW8 sing 124 n n PBO CBN DW8 sing 125 n n PBO OAE DW8 sing 126 n n CBN CAN DW8 doub 127 n y CAS OBD DW8 sing 128 n n CAW OBF DW8 sing 129 n n CAH CAI DW8 doub 130 n y OBF CAX DW8 sing 131 n n CAX CAY DW8 sing 132 n n CAN CAI DW8 sing 133 n y CAY CBH DW8 sing 134 n n CBH NBA DW8 sing 135 n n CBH OAB DW8 doub 136 n n NBA CAQ DW8 sing 137 n n CAQ CAP DW8 sing 138 n n OAG H1 DW8 sing 139 n n OAE H2 DW8 sing 140 n n CAN H3 DW8 sing 141 n n CAI H4 DW8 sing 142 n n CAH H5 DW8 sing 143 n n CAM H6 DW8 sing 144 n n CAZ H7 DW8 sing 145 n n CAZ H8 DW8 sing 146 n n NBC H9 DW8 sing 147 n n CAO H10 DW8 sing 148 n n CAK H11 DW8 sing 149 n n CAJ H12 DW8 sing 150 n n CAL H13 DW8 sing 151 n n NBB H14 DW8 sing 152 n n CAR H15 DW8 sing 153 n n CAR H16 DW8 sing 154 n n CAS H17 DW8 sing 155 n n CAS H18 DW8 sing 156 n n CAT H19 DW8 sing 157 n n CAT H20 DW8 sing 158 n n CAU H21 DW8 sing 159 n n CAU H22 DW8 sing 160 n n CAV H23 DW8 sing 161 n n CAV H24 DW8 sing 162 n n CAW H25 DW8 sing 163 n n CAW H26 DW8 sing 164 n n CAX H27 DW8 sing 165 n n CAX H28 DW8 sing 166 n n CAY H29 DW8 sing 167 n n CAY H30 DW8 sing 168 n n NBA H31 DW8 sing 169 n n CAQ H32 DW8 sing 170 n n CAQ H33 DW8 sing 171 n n CAP H34 DW8 sing 172 n n CAP H35 DW8 sing 173 n n CAP C1 DW8 sing 174 n n C1 H36 DW8 sing 175 n n C1 H37 DW8 sing 176 n n C1 H38 DW8 sing 177 n n # _atom_sites.entry_id 6FN9 _atom_sites.fract_transf_matrix[1][1] 0.0139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DW8 A 1 301 3 DW8 DW8 . D 3 BEZ A 1 302 1 BEZ BEZ . E 4 GOL A 1 303 2 GOL GOL . F 2 DW8 B 1 301 2 DW8 DW8 . G 3 BEZ B 1 302 2 BEZ BEZ . H 4 GOL B 1 303 1 GOL GOL . I 5 HOH A 1 401 33 HOH HOH . I 5 HOH A 2 402 90 HOH HOH . I 5 HOH A 3 403 61 HOH HOH . I 5 HOH A 4 404 82 HOH HOH . I 5 HOH A 5 405 52 HOH HOH . I 5 HOH A 6 406 107 HOH HOH . I 5 HOH A 7 407 41 HOH HOH . I 5 HOH A 8 408 36 HOH HOH . I 5 HOH A 9 409 68 HOH HOH . I 5 HOH A 10 410 86 HOH HOH . I 5 HOH A 11 411 46 HOH HOH . I 5 HOH A 12 412 2 HOH HOH . I 5 HOH A 13 413 53 HOH HOH . I 5 HOH A 14 414 29 HOH HOH . I 5 HOH A 15 415 76 HOH HOH . I 5 HOH A 16 416 1 HOH HOH . I 5 HOH A 17 417 65 HOH HOH . I 5 HOH A 18 418 44 HOH HOH . I 5 HOH A 19 419 18 HOH HOH . I 5 HOH A 20 420 55 HOH HOH . I 5 HOH A 21 421 59 HOH HOH . I 5 HOH A 22 422 26 HOH HOH . I 5 HOH A 23 423 21 HOH HOH . I 5 HOH A 24 424 6 HOH HOH . I 5 HOH A 25 425 24 HOH HOH . I 5 HOH A 26 426 4 HOH HOH . I 5 HOH A 27 427 70 HOH HOH . I 5 HOH A 28 428 19 HOH HOH . I 5 HOH A 29 429 7 HOH HOH . I 5 HOH A 30 430 25 HOH HOH . I 5 HOH A 31 431 5 HOH HOH . I 5 HOH A 32 432 20 HOH HOH . I 5 HOH A 33 433 22 HOH HOH . I 5 HOH A 34 434 58 HOH HOH . I 5 HOH A 35 435 74 HOH HOH . I 5 HOH A 36 436 108 HOH HOH . I 5 HOH A 37 437 81 HOH HOH . I 5 HOH A 38 438 12 HOH HOH . I 5 HOH A 39 439 39 HOH HOH . I 5 HOH A 40 440 54 HOH HOH . I 5 HOH A 41 441 63 HOH HOH . I 5 HOH A 42 442 85 HOH HOH . I 5 HOH A 43 443 49 HOH HOH . I 5 HOH A 44 444 50 HOH HOH . I 5 HOH A 45 445 99 HOH HOH . I 5 HOH A 46 446 91 HOH HOH . I 5 HOH A 47 447 109 HOH HOH . I 5 HOH A 48 448 92 HOH HOH . I 5 HOH A 49 449 101 HOH HOH . I 5 HOH A 50 450 45 HOH HOH . I 5 HOH A 51 451 88 HOH HOH . I 5 HOH A 52 452 77 HOH HOH . I 5 HOH A 53 453 89 HOH HOH . I 5 HOH A 54 454 100 HOH HOH . I 5 HOH A 55 455 93 HOH HOH . I 5 HOH A 56 456 103 HOH HOH . I 5 HOH A 57 457 87 HOH HOH . I 5 HOH A 58 458 102 HOH HOH . I 5 HOH A 59 459 84 HOH HOH . I 5 HOH A 60 460 78 HOH HOH . J 5 HOH B 1 401 96 HOH HOH . J 5 HOH B 2 402 42 HOH HOH . J 5 HOH B 3 403 27 HOH HOH . J 5 HOH B 4 404 95 HOH HOH . J 5 HOH B 5 405 11 HOH HOH . J 5 HOH B 6 406 72 HOH HOH . J 5 HOH B 7 407 35 HOH HOH . J 5 HOH B 8 408 98 HOH HOH . J 5 HOH B 9 409 8 HOH HOH . J 5 HOH B 10 410 38 HOH HOH . J 5 HOH B 11 411 16 HOH HOH . J 5 HOH B 12 412 67 HOH HOH . J 5 HOH B 13 413 69 HOH HOH . J 5 HOH B 14 414 28 HOH HOH . J 5 HOH B 15 415 71 HOH HOH . J 5 HOH B 16 416 73 HOH HOH . J 5 HOH B 17 417 57 HOH HOH . J 5 HOH B 18 418 117 HOH HOH . J 5 HOH B 19 419 23 HOH HOH . J 5 HOH B 20 420 47 HOH HOH . J 5 HOH B 21 421 118 HOH HOH . J 5 HOH B 22 422 17 HOH HOH . J 5 HOH B 23 423 120 HOH HOH . J 5 HOH B 24 424 119 HOH HOH . J 5 HOH B 25 425 32 HOH HOH . J 5 HOH B 26 426 112 HOH HOH . J 5 HOH B 27 427 51 HOH HOH . J 5 HOH B 28 428 30 HOH HOH . J 5 HOH B 29 429 34 HOH HOH . J 5 HOH B 30 430 94 HOH HOH . J 5 HOH B 31 431 10 HOH HOH . J 5 HOH B 32 432 48 HOH HOH . J 5 HOH B 33 433 62 HOH HOH . J 5 HOH B 34 434 37 HOH HOH . J 5 HOH B 35 435 83 HOH HOH . J 5 HOH B 36 436 66 HOH HOH . J 5 HOH B 37 437 9 HOH HOH . J 5 HOH B 38 438 75 HOH HOH . J 5 HOH B 39 439 31 HOH HOH . J 5 HOH B 40 440 115 HOH HOH . J 5 HOH B 41 441 15 HOH HOH . J 5 HOH B 42 442 13 HOH HOH . J 5 HOH B 43 443 14 HOH HOH . J 5 HOH B 44 444 106 HOH HOH . J 5 HOH B 45 445 116 HOH HOH . J 5 HOH B 46 446 105 HOH HOH . J 5 HOH B 47 447 113 HOH HOH . J 5 HOH B 48 448 121 HOH HOH . J 5 HOH B 49 449 110 HOH HOH . J 5 HOH B 50 450 114 HOH HOH . J 5 HOH B 51 451 56 HOH HOH . J 5 HOH B 52 452 3 HOH HOH . J 5 HOH B 53 453 60 HOH HOH . J 5 HOH B 54 454 104 HOH HOH . J 5 HOH B 55 455 97 HOH HOH . J 5 HOH B 56 456 111 HOH HOH . J 5 HOH B 57 457 40 HOH HOH . J 5 HOH B 58 458 79 HOH HOH . J 5 HOH B 59 459 80 HOH HOH . J 5 HOH B 60 460 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAF DW8 . . . F 2 39.179 4.976 -1.587 1 42.9 ? OAF DW8 301 B 1 HETATM 2 P PBO DW8 . . . F 2 38.318 5.372 -2.872 1 43.61 ? PBO DW8 301 B 1 HETATM 3 O OAG DW8 . . . F 2 36.825 5.396 -2.313 1 42.77 ? OAG DW8 301 B 1 HETATM 4 O OAE DW8 . . . F 2 38.476 4.258 -3.83 1 44.19 ? OAE DW8 301 B 1 HETATM 5 C CBN DW8 . . . F 2 38.758 6.982 -3.344 1 43.55 ? CBN DW8 301 B 1 HETATM 6 C CAN DW8 . . . F 2 39.344 7.184 -4.588 1 43.13 ? CAN DW8 301 B 1 HETATM 7 C CAI DW8 . . . F 2 39.713 8.464 -4.987 1 43.13 ? CAI DW8 301 B 1 HETATM 8 C CAH DW8 . . . F 2 39.497 9.549 -4.141 1 44.33 ? CAH DW8 301 B 1 HETATM 9 C CAM DW8 . . . F 2 38.914 9.357 -2.891 1 44.03 ? CAM DW8 301 B 1 HETATM 10 C CBM DW8 . . . F 2 38.538 8.071 -2.497 1 45.24 ? CBM DW8 301 B 1 HETATM 11 O OBG DW8 . . . F 2 37.971 7.783 -1.284 1 47.24 ? OBG DW8 301 B 1 HETATM 12 C CAZ DW8 . . . F 2 37.134 8.781 -0.667 1 48.17 ? CAZ DW8 301 B 1 HETATM 13 C CBI DW8 . . . F 2 36.009 8.072 0.086 1 48.34 ? CBI DW8 301 B 1 HETATM 14 O OAC DW8 . . . F 2 35.361 8.656 0.955 1 48.28 ? OAC DW8 301 B 1 HETATM 15 N NBC DW8 . . . F 2 35.836 6.793 -0.292 1 50.51 ? NBC DW8 301 B 1 HETATM 16 C CBK DW8 . . . F 2 34.853 6.063 0.233 1 51.19 ? CBK DW8 301 B 1 HETATM 17 C CAO DW8 . . . F 2 33.855 5.638 -0.634 1 52.38 ? CAO DW8 301 B 1 HETATM 18 C CAK DW8 . . . F 2 34.798 5.709 1.577 1 50.16 ? CAK DW8 301 B 1 HETATM 19 C CAJ DW8 . . . F 2 33.734 4.936 2.037 1 50.68 ? CAJ DW8 301 B 1 HETATM 20 C CAL DW8 . . . F 2 32.732 4.514 1.164 1 51.52 ? CAL DW8 301 B 1 HETATM 21 C CBL DW8 . . . F 2 32.782 4.872 -0.185 1 54.38 ? CBL DW8 301 B 1 HETATM 22 C CBJ DW8 . . . F 2 31.823 4.468 -1.123 1 57.21 ? CBJ DW8 301 B 1 HETATM 23 O OAD DW8 . . . F 2 32.171 4.187 -2.271 1 59.04 ? OAD DW8 301 B 1 HETATM 24 N NBB DW8 . . . F 2 30.543 4.396 -0.727 1 60.27 ? NBB DW8 301 B 1 HETATM 25 C CAR DW8 . . . F 2 29.509 3.98 -1.664 1 66.11 ? CAR DW8 301 B 1 HETATM 26 C CAS DW8 . . . F 2 28.771 5.259 -2.072 1 69.97 ? CAS DW8 301 B 1 HETATM 27 O OBD DW8 . . . F 2 29.546 5.948 -3.071 1 74.34 ? OBD DW8 301 B 1 HETATM 28 C CAT DW8 . . . F 2 28.894 7.139 -3.47 1 77.77 ? CAT DW8 301 B 1 HETATM 29 C CAU DW8 . . . F 2 29.974 8.01 -4.129 1 79.67 ? CAU DW8 301 B 1 HETATM 30 O OBE DW8 . . . F 2 31.193 7.986 -3.36 1 83.28 ? OBE DW8 301 B 1 HETATM 31 C CAV DW8 . . . F 2 32.129 8.9 -3.897 1 85.44 ? CAV DW8 301 B 1 HETATM 32 C CAW DW8 . . . F 2 33.405 8.082 -4.134 1 87.37 ? CAW DW8 301 B 1 HETATM 33 O OBF DW8 . . . F 2 34.568 8.908 -3.934 1 91.35 ? OBF DW8 301 B 1 HETATM 34 C CAX DW8 . . . F 2 35.584 8.696 -4.9 1 93.38 ? CAX DW8 301 B 1 HETATM 35 C CAY DW8 . . . F 2 35.259 9.673 -6.051 1 92.65 ? CAY DW8 301 B 1 HETATM 36 C CBH DW8 . . . F 2 35.883 9.244 -7.393 1 91.2 ? CBH DW8 301 B 1 HETATM 37 O OAB DW8 . . . F 2 36.489 8.178 -7.515 1 89.31 ? OAB DW8 301 B 1 HETATM 38 N NBA DW8 . . . F 2 35.695 10.127 -8.394 1 88.96 ? NBA DW8 301 B 1 HETATM 39 C CAQ DW8 . . . F 2 36.204 9.908 -9.757 1 85.92 ? CAQ DW8 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #