data_6FO0 # _model_server_result.job_id YIEKqbpav_Ku7p59lX37Rw _model_server_result.datetime_utc '2024-11-25 12:48:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fo0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":502}' # _entry.id 6FO0 # _exptl.entry_id 6FO0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FO0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 Y N N ? 11 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 217 R CYS 139 1_555 E SG CYS 236 R CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 H SG CYS 37 U CYS 24 1_555 H SG CYS 81 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 H SG CYS 53 U CYS 40 1_555 H SG CYS 67 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 O SG CYS 217 E CYS 139 1_555 O SG CYS 236 E CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 R SG CYS 37 H CYS 24 1_555 R SG CYS 81 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 R SG CYS 53 H CYS 40 1_555 R SG CYS 67 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 C NE2 HIS 97 P HIS 97 1_555 V FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc2 C NE2 HIS 182 P HIS 182 1_555 U FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc3 C NE2 HIS 196 P HIS 196 1_555 V FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc4 D NE2 HIS 125 Q HIS 41 1_555 X FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc5 M NE2 HIS 97 C HIS 97 1_555 Z FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc6 M NE2 HIS 196 C HIS 196 1_555 Z FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc7 N NE2 HIS 125 D HIS 41 1_555 BA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 259 n n CHA C4D HEM doub 260 n n CHA HHA HEM sing 261 n n CHB C4A HEM sing 262 n n CHB C1B HEM doub 263 n n CHB HHB HEM sing 264 n n CHC C4B HEM sing 265 n n CHC C1C HEM doub 266 n n CHC HHC HEM sing 267 n n CHD C4C HEM doub 268 n n CHD C1D HEM sing 269 n n CHD HHD HEM sing 270 n n C1A C2A HEM doub 271 n y C1A NA HEM sing 272 n y C2A C3A HEM sing 273 n y C2A CAA HEM sing 274 n n C3A C4A HEM doub 275 n y C3A CMA HEM sing 276 n n C4A NA HEM sing 277 n y CMA HMA HEM sing 278 n n CMA HMAA HEM sing 279 n n CMA HMAB HEM sing 280 n n CAA CBA HEM sing 281 n n CAA HAA HEM sing 282 n n CAA HAAA HEM sing 283 n n CBA CGA HEM sing 284 n n CBA HBA HEM sing 285 n n CBA HBAA HEM sing 286 n n CGA O1A HEM doub 287 n n CGA O2A HEM sing 288 n n C1B C2B HEM sing 289 n n C1B NB HEM sing 290 n n C2B C3B HEM doub 291 n n C2B CMB HEM sing 292 n n C3B C4B HEM sing 293 n n C3B CAB HEM sing 294 n n C4B NB HEM doub 295 n n CMB HMB HEM sing 296 n n CMB HMBA HEM sing 297 n n CMB HMBB HEM sing 298 n n CAB CBB HEM doub 299 n n CAB HAB HEM sing 300 n n CBB HBB HEM sing 301 n n CBB HBBA HEM sing 302 n n C1C C2C HEM sing 303 n y C1C NC HEM sing 304 n y C2C C3C HEM doub 305 n y C2C CMC HEM sing 306 n n C3C C4C HEM sing 307 n y C3C CAC HEM sing 308 n n C4C NC HEM sing 309 n y CMC HMC HEM sing 310 n n CMC HMCA HEM sing 311 n n CMC HMCB HEM sing 312 n n CAC CBC HEM doub 313 n n CAC HAC HEM sing 314 n n CBC HBC HEM sing 315 n n CBC HBCA HEM sing 316 n n C1D C2D HEM sing 317 n n C1D ND HEM doub 318 n n C2D C3D HEM doub 319 n n C2D CMD HEM sing 320 n n C3D C4D HEM sing 321 n n C3D CAD HEM sing 322 n n C4D ND HEM sing 323 n n CMD HMD HEM sing 324 n n CMD HMDA HEM sing 325 n n CMD HMDB HEM sing 326 n n CAD CBD HEM sing 327 n n CAD HAD HEM sing 328 n n CAD HADA HEM sing 329 n n CBD CGD HEM sing 330 n n CBD HBD HEM sing 331 n n CBD HBDA HEM sing 332 n n CGD O1D HEM doub 333 n n CGD O2D HEM sing 334 n n O2A H2A HEM sing 335 n n O2D H2D HEM sing 336 n n FE NA HEM sing 337 n n FE NB HEM sing 338 n n FE NC HEM sing 339 n n FE ND HEM sing 340 n n # _atom_sites.entry_id 6FO0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM P 1 501 501 HEM HEM . V 11 HEM P 1 502 502 HEM HEM . W 12 G8U P 1 503 503 G8U G8U . X 13 HEC Q 1 501 501 HEC HEC . Y 11 HEM C 1 501 501 HEM HEM . Z 11 HEM C 1 502 502 HEM HEM . AA 12 G8U C 1 503 503 G8U G8U . BA 13 HEC D 1 501 501 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . Z 11 115.204 91.326 110.194 1 61.5 ? CHA HEM 502 C 1 HETATM 2 C CHB HEM . . . Z 11 112.472 93.16 113.742 1 61.5 ? CHB HEM 502 C 1 HETATM 3 C CHC HEM . . . Z 11 116.3 93.312 116.605 1 61.5 ? CHC HEM 502 C 1 HETATM 4 C CHD HEM . . . Z 11 119.093 92.324 112.812 1 61.5 ? CHD HEM 502 C 1 HETATM 5 C C1A HEM . . . Z 11 114.142 91.707 110.971 1 61.5 ? C1A HEM 502 C 1 HETATM 6 C C2A HEM . . . Z 11 112.759 91.476 110.64 1 61.5 ? C2A HEM 502 C 1 HETATM 7 C C3A HEM . . . Z 11 112.016 91.972 111.608 1 61.5 ? C3A HEM 502 C 1 HETATM 8 C C4A HEM . . . Z 11 112.888 92.545 112.595 1 61.5 ? C4A HEM 502 C 1 HETATM 9 C CMA HEM . . . Z 11 110.482 91.941 111.667 1 61.5 ? CMA HEM 502 C 1 HETATM 10 C CAA HEM . . . Z 11 112.221 90.766 109.391 1 61.5 ? CAA HEM 502 C 1 HETATM 11 C CBA HEM . . . Z 11 112.172 89.284 109.718 1 61.5 ? CBA HEM 502 C 1 HETATM 12 C CGA HEM . . . Z 11 113.452 88.667 109.232 1 61.5 ? CGA HEM 502 C 1 HETATM 13 O O1A HEM . . . Z 11 113.848 87.583 109.738 1 61.5 ? O1A HEM 502 C 1 HETATM 14 O O2A HEM . . . Z 11 114.076 89.281 108.333 1 61.5 ? O2A HEM 502 C 1 HETATM 15 C C1B HEM . . . Z 11 113.27 93.385 114.827 1 61.5 ? C1B HEM 502 C 1 HETATM 16 C C2B HEM . . . Z 11 112.866 93.976 116.084 1 61.5 ? C2B HEM 502 C 1 HETATM 17 C C3B HEM . . . Z 11 113.944 94.021 116.868 1 61.5 ? C3B HEM 502 C 1 HETATM 18 C C4B HEM . . . Z 11 115.034 93.448 116.136 1 61.5 ? C4B HEM 502 C 1 HETATM 19 C CMB HEM . . . Z 11 111.436 94.463 116.397 1 61.5 ? CMB HEM 502 C 1 HETATM 20 C CAB HEM . . . Z 11 114.113 94.525 118.313 1 61.5 ? CAB HEM 502 C 1 HETATM 21 C CBB HEM . . . Z 11 113.095 94.929 119.071 1 61.5 ? CBB HEM 502 C 1 HETATM 22 C C1C HEM . . . Z 11 117.374 93.031 115.816 1 61.5 ? C1C HEM 502 C 1 HETATM 23 C C2C HEM . . . Z 11 118.72 92.89 116.294 1 61.5 ? C2C HEM 502 C 1 HETATM 24 C C3C HEM . . . Z 11 119.5 92.621 115.274 1 61.5 ? C3C HEM 502 C 1 HETATM 25 C C4C HEM . . . Z 11 118.672 92.578 114.087 1 61.5 ? C4C HEM 502 C 1 HETATM 26 C CMC HEM . . . Z 11 119.206 93.025 117.747 1 61.5 ? CMC HEM 502 C 1 HETATM 27 C CAC HEM . . . Z 11 121.016 92.41 115.453 1 61.5 ? CAC HEM 502 C 1 HETATM 28 C CBC HEM . . . Z 11 121.867 92.32 114.434 1 61.5 ? CBC HEM 502 C 1 HETATM 29 C C1D HEM . . . Z 11 118.289 91.983 111.761 1 61.5 ? C1D HEM 502 C 1 HETATM 30 C C2D HEM . . . Z 11 118.741 91.677 110.434 1 61.5 ? C2D HEM 502 C 1 HETATM 31 C C3D HEM . . . Z 11 117.695 91.392 109.678 1 61.5 ? C3D HEM 502 C 1 HETATM 32 C C4D HEM . . . Z 11 116.517 91.513 110.519 1 61.5 ? C4D HEM 502 C 1 HETATM 33 C CMD HEM . . . Z 11 120.201 91.669 109.957 1 61.5 ? CMD HEM 502 C 1 HETATM 34 C CAD HEM . . . Z 11 117.858 91.017 108.184 1 61.5 ? CAD HEM 502 C 1 HETATM 35 C CBD HEM . . . Z 11 116.634 90.39 107.529 1 61.5 ? CBD HEM 502 C 1 HETATM 36 C CGD HEM . . . Z 11 117.054 89.353 106.521 1 61.5 ? CGD HEM 502 C 1 HETATM 37 O O1D HEM . . . Z 11 118.228 88.909 106.567 1 61.5 ? O1D HEM 502 C 1 HETATM 38 O O2D HEM . . . Z 11 116.211 88.961 105.672 1 61.5 ? O2D HEM 502 C 1 HETATM 39 N NA HEM . . . Z 11 114.189 92.368 112.183 1 61.5 ? NA HEM 502 C 1 HETATM 40 N NB HEM . . . Z 11 114.602 93.074 114.895 1 61.5 ? NB HEM 502 C 1 HETATM 41 N NC HEM . . . Z 11 117.369 92.832 114.456 1 61.5 ? NC HEM 502 C 1 HETATM 42 N ND HEM . . . Z 11 116.915 91.883 111.793 1 61.5 ? ND HEM 502 C 1 HETATM 43 FE FE HEM . . . Z 11 115.683 92.283 113.534 1 61.5 ? FE HEM 502 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 88 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #