data_6FO2 # _model_server_result.job_id f5wbj_DKNuUT1UktF91GHw _model_server_result.datetime_utc '2024-11-27 19:17:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fo2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":501}' # _entry.id 6FO2 # _exptl.entry_id 6FO2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FO2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 W N N ? 12 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 217 R CYS 139 1_555 E SG CYS 236 R CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 H SG CYS 37 U CYS 24 1_555 H SG CYS 81 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? disulf ? disulf3 H SG CYS 53 U CYS 40 1_555 H SG CYS 67 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 O SG CYS 217 E CYS 139 1_555 O SG CYS 236 E CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 R SG CYS 37 H CYS 24 1_555 R SG CYS 81 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? disulf ? disulf6 R SG CYS 53 H CYS 40 1_555 R SG CYS 67 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 C NE2 HIS 97 P HIS 97 1_555 V FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc2 C NE2 HIS 196 P HIS 196 1_555 V FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc3 D NE2 HIS 125 Q HIS 41 1_555 W FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc4 M NE2 HIS 97 C HIS 97 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc5 M NE2 HIS 196 C HIS 196 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc6 N NE2 HIS 125 D HIS 41 1_555 Z FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 6FO2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM P 1 501 501 HEM HEM . V 11 HEM P 1 502 502 HEM HEM . W 12 HEC Q 1 501 501 HEC HEC . X 11 HEM C 1 501 501 HEM HEM . Y 11 HEM C 1 502 502 HEM HEM . Z 12 HEC D 1 501 501 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . W 12 96.976 129.695 161.352 1 121.05 ? FE HEC 501 Q 1 HETATM 2 C CHA HEC . . . W 12 94.368 128.641 159.556 1 121.05 ? CHA HEC 501 Q 1 HETATM 3 C CHB HEC . . . W 12 98.485 130.973 158.63 1 121.05 ? CHB HEC 501 Q 1 HETATM 4 C CHC HEC . . . W 12 99.612 131.051 163.296 1 121.05 ? CHC HEC 501 Q 1 HETATM 5 C CHD HEC . . . W 12 96.21 127.679 163.95 1 121.05 ? CHD HEC 501 Q 1 HETATM 6 N NA HEC . . . W 12 96.51 129.806 159.473 1 121.05 ? NA HEC 501 Q 1 HETATM 7 C C1A HEC . . . W 12 95.383 129.277 158.89 1 121.05 ? C1A HEC 501 Q 1 HETATM 8 C C2A HEC . . . W 12 95.455 129.516 157.467 1 121.05 ? C2A HEC 501 Q 1 HETATM 9 C C3A HEC . . . W 12 96.598 130.157 157.22 1 121.05 ? C3A HEC 501 Q 1 HETATM 10 C C4A HEC . . . W 12 97.278 130.351 158.473 1 121.05 ? C4A HEC 501 Q 1 HETATM 11 C CMA HEC . . . W 12 97.139 130.63 155.858 1 121.05 ? CMA HEC 501 Q 1 HETATM 12 C CAA HEC . . . W 12 94.393 129.075 156.438 1 121.05 ? CAA HEC 501 Q 1 HETATM 13 C CBA HEC . . . W 12 93.969 130.242 155.555 1 121.05 ? CBA HEC 501 Q 1 HETATM 14 C CGA HEC . . . W 12 93.121 129.725 154.425 1 121.05 ? CGA HEC 501 Q 1 HETATM 15 O O1A HEC . . . W 12 92.702 128.541 154.481 1 121.05 ? O1A HEC 501 Q 1 HETATM 16 O O2A HEC . . . W 12 92.863 130.492 153.462 1 121.05 ? O2A HEC 501 Q 1 HETATM 17 N NB HEC . . . W 12 98.856 130.682 161.02 1 121.05 ? NB HEC 501 Q 1 HETATM 18 C C1B HEC . . . W 12 99.009 131.355 159.833 1 121.05 ? C1B HEC 501 Q 1 HETATM 19 C C2B HEC . . . W 12 99.803 132.539 160.06 1 121.05 ? C2B HEC 501 Q 1 HETATM 20 C C3B HEC . . . W 12 100.108 132.589 161.354 1 121.05 ? C3B HEC 501 Q 1 HETATM 21 C C4B HEC . . . W 12 99.55 131.405 161.972 1 121.05 ? C4B HEC 501 Q 1 HETATM 22 C CMB HEC . . . W 12 100.188 133.567 158.977 1 121.05 ? CMB HEC 501 Q 1 HETATM 23 C CAB HEC . . . W 12 100.961 133.663 162.072 1 121.05 ? CAB HEC 501 Q 1 HETATM 24 C CBB HEC . . . W 12 100.536 135.109 161.752 1 121.05 ? CBB HEC 501 Q 1 HETATM 25 N NC HEC . . . W 12 97.779 129.42 163.228 1 121.05 ? NC HEC 501 Q 1 HETATM 26 C C1C HEC . . . W 12 98.801 130.099 163.868 1 121.05 ? C1C HEC 501 Q 1 HETATM 27 C C2C HEC . . . W 12 98.822 129.692 165.256 1 121.05 ? C2C HEC 501 Q 1 HETATM 28 C C3C HEC . . . W 12 97.954 128.697 165.394 1 121.05 ? C3C HEC 501 Q 1 HETATM 29 C C4C HEC . . . W 12 97.24 128.553 164.151 1 121.05 ? C4C HEC 501 Q 1 HETATM 30 C CMC HEC . . . W 12 99.887 130.098 166.292 1 121.05 ? CMC HEC 501 Q 1 HETATM 31 C CAC HEC . . . W 12 97.664 127.907 166.684 1 121.05 ? CAC HEC 501 Q 1 HETATM 32 C CBC HEC . . . W 12 97.161 128.884 167.764 1 121.05 ? CBC HEC 501 Q 1 HETATM 33 N ND HEC . . . W 12 95.534 128.327 161.681 1 121.05 ? ND HEC 501 Q 1 HETATM 34 C C1D HEC . . . W 12 95.348 127.677 162.889 1 121.05 ? C1D HEC 501 Q 1 HETATM 35 C C2D HEC . . . W 12 94.094 126.974 162.857 1 121.05 ? C2D HEC 501 Q 1 HETATM 36 C C3D HEC . . . W 12 93.498 127.27 161.486 1 121.05 ? C3D HEC 501 Q 1 HETATM 37 C C4D HEC . . . W 12 94.464 128.118 160.822 1 121.05 ? C4D HEC 501 Q 1 HETATM 38 C CMD HEC . . . W 12 93.474 126.113 163.977 1 121.05 ? CMD HEC 501 Q 1 HETATM 39 C CAD HEC . . . W 12 92.15 126.727 160.985 1 121.05 ? CAD HEC 501 Q 1 HETATM 40 C CBD HEC . . . W 12 91.357 127.789 160.246 1 121.05 ? CBD HEC 501 Q 1 HETATM 41 C CGD HEC . . . W 12 90.046 127.166 159.864 1 121.05 ? CGD HEC 501 Q 1 HETATM 42 O O1D HEC . . . W 12 89.256 127.811 159.13 1 121.05 ? O1D HEC 501 Q 1 HETATM 43 O O2D HEC . . . W 12 89.799 126.013 160.298 1 121.05 ? O2D HEC 501 Q 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #