data_6FO6 # _model_server_result.job_id sW3dRsqFGcjNfYL20eZHPg _model_server_result.datetime_utc '2024-11-14 06:15:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fo6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":501}' # _entry.id 6FO6 # _exptl.entry_id 6FO6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FO6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FO6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 T N N ? 10 W N N ? 10 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 222 E CYS 144 1_555 A SG CYS 238 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 H SG CYS 37 H CYS 24 1_555 H SG CYS 81 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 H SG CYS 53 H CYS 40 1_555 H SG CYS 67 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 J SG CYS 222 R CYS 144 1_555 J SG CYS 238 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 Q SG CYS 37 U CYS 24 1_555 Q SG CYS 81 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 Q SG CYS 53 U CYS 40 1_555 Q SG CYS 67 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 D NE2 HIS 83 C HIS 83 1_555 S FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc2 D NE2 HIS 97 C HIS 97 1_555 T FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc3 D NE2 HIS 182 C HIS 182 1_555 S FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc4 D NE2 HIS 196 C HIS 196 1_555 T FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc5 E NE2 HIS 125 D HIS 41 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc6 M NE2 HIS 83 P HIS 83 1_555 W FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc7 M NE2 HIS 97 P HIS 97 1_555 X FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc8 M NE2 HIS 182 P HIS 182 1_555 W FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc9 M NE2 HIS 196 P HIS 196 1_555 X FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc10 N NE2 HIS 125 Q HIS 41 1_555 Z FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 6FO6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM C 1 501 501 HEM HEM . T 10 HEM C 1 502 502 HEM HEM . U 11 DY2 C 1 503 1 DY2 SCK . V 12 HEC D 1 501 501 HEC HEC . W 10 HEM P 1 501 501 HEM HEM . X 10 HEM P 1 502 502 HEM HEM . Y 11 DY2 P 1 503 1 DY2 SCK . Z 12 HEC Q 1 501 501 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . S 10 110.472 95.287 135.817 1 42.61 ? CHA HEM 501 C 1 HETATM 2 C CHB HEM . . . S 10 112.599 93.87 131.726 1 42.61 ? CHB HEM 501 C 1 HETATM 3 C CHC HEM . . . S 10 109.878 97.014 129.321 1 42.61 ? CHC HEM 501 C 1 HETATM 4 C CHD HEM . . . S 10 107.536 98.18 133.369 1 42.61 ? CHD HEM 501 C 1 HETATM 5 C C1A HEM . . . S 10 111.201 94.568 134.913 1 42.61 ? C1A HEM 501 C 1 HETATM 6 C C2A HEM . . . S 10 111.91 93.343 135.18 1 42.61 ? C2A HEM 501 C 1 HETATM 7 C C3A HEM . . . S 10 112.486 92.956 134.046 1 42.61 ? C3A HEM 501 C 1 HETATM 8 C C4A HEM . . . S 10 112.175 93.921 133.027 1 42.61 ? C4A HEM 501 C 1 HETATM 9 C CMA HEM . . . S 10 113.347 91.696 133.846 1 42.61 ? CMA HEM 501 C 1 HETATM 10 C CAA HEM . . . S 10 111.972 92.599 136.531 1 42.61 ? CAA HEM 501 C 1 HETATM 11 C CBA HEM . . . S 10 110.558 92.311 137.015 1 42.61 ? CBA HEM 501 C 1 HETATM 12 C CGA HEM . . . S 10 110.618 91.392 138.197 1 42.61 ? CGA HEM 501 C 1 HETATM 13 O O1A HEM . . . S 10 111.726 90.889 138.503 1 42.61 ? O1A HEM 501 C 1 HETATM 14 O O2A HEM . . . S 10 109.557 91.163 138.828 1 42.61 ? O2A HEM 501 C 1 HETATM 15 C C1B HEM . . . S 10 112.134 94.674 130.718 1 42.61 ? C1B HEM 501 C 1 HETATM 16 C C2B HEM . . . S 10 112.669 94.785 129.383 1 42.61 ? C2B HEM 501 C 1 HETATM 17 C C3B HEM . . . S 10 111.922 95.66 128.707 1 42.61 ? C3B HEM 501 C 1 HETATM 18 C C4B HEM . . . S 10 110.876 96.127 129.591 1 42.61 ? C4B HEM 501 C 1 HETATM 19 C CMB HEM . . . S 10 113.91 94.038 128.853 1 42.61 ? CMB HEM 501 C 1 HETATM 20 C CAB HEM . . . S 10 112.184 96.071 127.244 1 42.61 ? CAB HEM 501 C 1 HETATM 21 C CBB HEM . . . S 10 111.289 96.721 126.496 1 42.61 ? CBB HEM 501 C 1 HETATM 22 C C1C HEM . . . S 10 108.986 97.524 130.226 1 42.61 ? C1C HEM 501 C 1 HETATM 23 C C2C HEM . . . S 10 107.858 98.335 129.853 1 42.61 ? C2C HEM 501 C 1 HETATM 24 C C3C HEM . . . S 10 107.21 98.67 130.955 1 42.61 ? C3C HEM 501 C 1 HETATM 25 C C4C HEM . . . S 10 107.893 98.064 132.059 1 42.61 ? C4C HEM 501 C 1 HETATM 26 C CMC HEM . . . S 10 107.52 98.722 128.408 1 42.61 ? CMC HEM 501 C 1 HETATM 27 C CAC HEM . . . S 10 105.925 99.491 131.111 1 42.61 ? CAC HEM 501 C 1 HETATM 28 C CBC HEM . . . S 10 105.142 99.863 130.098 1 42.61 ? CBC HEM 501 C 1 HETATM 29 C C1D HEM . . . S 10 108.202 97.576 134.392 1 42.61 ? C1D HEM 501 C 1 HETATM 30 C C2D HEM . . . S 10 108.039 97.87 135.788 1 42.61 ? C2D HEM 501 C 1 HETATM 31 C C3D HEM . . . S 10 108.848 97.068 136.451 1 42.61 ? C3D HEM 501 C 1 HETATM 32 C C4D HEM . . . S 10 109.546 96.237 135.498 1 42.61 ? C4D HEM 501 C 1 HETATM 33 C CMD HEM . . . S 10 107.102 98.925 136.399 1 42.61 ? CMD HEM 501 C 1 HETATM 34 C CAD HEM . . . S 10 109.006 97.031 137.98 1 42.61 ? CAD HEM 501 C 1 HETATM 35 C CBD HEM . . . S 10 107.784 96.358 138.594 1 42.61 ? CBD HEM 501 C 1 HETATM 36 C CGD HEM . . . S 10 108.161 94.952 138.961 1 42.61 ? CGD HEM 501 C 1 HETATM 37 O O1D HEM . . . S 10 109.247 94.495 138.53 1 42.61 ? O1D HEM 501 C 1 HETATM 38 O O2D HEM . . . S 10 107.378 94.287 139.678 1 42.61 ? O2D HEM 501 C 1 HETATM 39 N NA HEM . . . S 10 111.386 94.896 133.589 1 42.61 ? NA HEM 501 C 1 HETATM 40 N NB HEM . . . S 10 111.036 95.496 130.798 1 42.61 ? NB HEM 501 C 1 HETATM 41 N NC HEM . . . S 10 108.994 97.366 131.595 1 42.61 ? NC HEM 501 C 1 HETATM 42 N ND HEM . . . S 10 109.133 96.566 134.226 1 42.61 ? ND HEM 501 C 1 HETATM 43 FE FE HEM . . . S 10 109.993 95.699 132.444 1 42.61 ? FE HEM 501 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #