data_6FO6 # _model_server_result.job_id 9G2iDAVsCYmeo4KR90XRtA _model_server_result.datetime_utc '2024-11-23 13:08:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fo6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":501}' # _entry.id 6FO6 # _exptl.entry_id 6FO6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FO6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FO6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 V N N ? 12 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 222 E CYS 144 1_555 A SG CYS 238 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 H SG CYS 37 H CYS 24 1_555 H SG CYS 81 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 H SG CYS 53 H CYS 40 1_555 H SG CYS 67 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 J SG CYS 222 R CYS 144 1_555 J SG CYS 238 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 Q SG CYS 37 U CYS 24 1_555 Q SG CYS 81 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 Q SG CYS 53 U CYS 40 1_555 Q SG CYS 67 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 D NE2 HIS 83 C HIS 83 1_555 S FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc2 D NE2 HIS 97 C HIS 97 1_555 T FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc3 D NE2 HIS 182 C HIS 182 1_555 S FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc4 D NE2 HIS 196 C HIS 196 1_555 T FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc5 E NE2 HIS 125 D HIS 41 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc6 M NE2 HIS 83 P HIS 83 1_555 W FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc7 M NE2 HIS 97 P HIS 97 1_555 X FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc8 M NE2 HIS 182 P HIS 182 1_555 W FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc9 M NE2 HIS 196 P HIS 196 1_555 X FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc10 N NE2 HIS 125 Q HIS 41 1_555 Z FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 180 n n FE NB HEC sing 181 n n FE NC HEC sing 182 n n FE ND HEC sing 183 n n CHA C1A HEC doub 184 n n CHA C4D HEC sing 185 n n CHA HHA HEC sing 186 n n CHB C4A HEC doub 187 n n CHB C1B HEC sing 188 n n CHB HHB HEC sing 189 n n CHC C4B HEC doub 190 n n CHC C1C HEC sing 191 n n CHC HHC HEC sing 192 n n CHD C4C HEC doub 193 n n CHD C1D HEC sing 194 n n CHD HHD HEC sing 195 n n NA C1A HEC sing 196 n y NA C4A HEC sing 197 n y C1A C2A HEC sing 198 n y C2A C3A HEC doub 199 n y C2A CAA HEC sing 200 n n C3A C4A HEC sing 201 n y C3A CMA HEC sing 202 n n CMA HMA1 HEC sing 203 n n CMA HMA2 HEC sing 204 n n CMA HMA3 HEC sing 205 n n CAA CBA HEC sing 206 n n CAA HAA1 HEC sing 207 n n CAA HAA2 HEC sing 208 n n CBA CGA HEC sing 209 n n CBA HBA1 HEC sing 210 n n CBA HBA2 HEC sing 211 n n CGA O1A HEC doub 212 n n CGA O2A HEC sing 213 n n O2A H2A HEC sing 214 n n NB C1B HEC sing 215 n y NB C4B HEC sing 216 n y C1B C2B HEC doub 217 n y C2B C3B HEC sing 218 n y C2B CMB HEC sing 219 n n C3B C4B HEC sing 220 n y C3B CAB HEC doub 221 e n CMB HMB1 HEC sing 222 n n CMB HMB2 HEC sing 223 n n CMB HMB3 HEC sing 224 n n CAB CBB HEC sing 225 n n CAB HAB HEC sing 226 n n CBB HBB1 HEC sing 227 n n CBB HBB2 HEC sing 228 n n CBB HBB3 HEC sing 229 n n NC C1C HEC sing 230 n y NC C4C HEC sing 231 n y C1C C2C HEC doub 232 n y C2C C3C HEC sing 233 n y C2C CMC HEC sing 234 n n C3C C4C HEC sing 235 n y C3C CAC HEC doub 236 e n CMC HMC1 HEC sing 237 n n CMC HMC2 HEC sing 238 n n CMC HMC3 HEC sing 239 n n CAC CBC HEC sing 240 n n CAC HAC HEC sing 241 n n CBC HBC1 HEC sing 242 n n CBC HBC2 HEC sing 243 n n CBC HBC3 HEC sing 244 n n ND C1D HEC sing 245 n y ND C4D HEC sing 246 n y C1D C2D HEC doub 247 n y C2D C3D HEC sing 248 n y C2D CMD HEC sing 249 n n C3D C4D HEC doub 250 n y C3D CAD HEC sing 251 n n CMD HMD1 HEC sing 252 n n CMD HMD2 HEC sing 253 n n CMD HMD3 HEC sing 254 n n CAD CBD HEC sing 255 n n CAD HAD1 HEC sing 256 n n CAD HAD2 HEC sing 257 n n CBD CGD HEC sing 258 n n CBD HBD1 HEC sing 259 n n CBD HBD2 HEC sing 260 n n CGD O1D HEC doub 261 n n CGD O2D HEC sing 262 n n O2D H2D HEC sing 263 n n # _atom_sites.entry_id 6FO6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM C 1 501 501 HEM HEM . T 10 HEM C 1 502 502 HEM HEM . U 11 DY2 C 1 503 1 DY2 SCK . V 12 HEC D 1 501 501 HEC HEC . W 10 HEM P 1 501 501 HEM HEM . X 10 HEM P 1 502 502 HEM HEM . Y 11 DY2 P 1 503 1 DY2 SCK . Z 12 HEC Q 1 501 501 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . V 12 113.856 81.292 163.308 1 78.86 ? FE HEC 501 D 1 HETATM 2 C CHA HEC . . . V 12 116.634 82.188 161.559 1 78.86 ? CHA HEC 501 D 1 HETATM 3 C CHB HEC . . . V 12 112.231 80.616 160.52 1 78.86 ? CHB HEC 501 D 1 HETATM 4 C CHC HEC . . . V 12 111.213 79.981 165.145 1 78.86 ? CHC HEC 501 D 1 HETATM 5 C CHD HEC . . . V 12 114.795 83.1 165.974 1 78.86 ? CHD HEC 501 D 1 HETATM 6 N NA HEC . . . V 12 114.308 81.537 161.352 1 78.86 ? NA HEC 501 D 1 HETATM 7 C C1A HEC . . . V 12 115.599 81.597 160.881 1 78.86 ? C1A HEC 501 D 1 HETATM 8 C C2A HEC . . . V 12 115.645 80.934 159.593 1 78.86 ? C2A HEC 501 D 1 HETATM 9 C C3A HEC . . . V 12 114.42 80.503 159.314 1 78.86 ? C3A HEC 501 D 1 HETATM 10 C C4A HEC . . . V 12 113.561 80.881 160.406 1 78.86 ? C4A HEC 501 D 1 HETATM 11 C CMA HEC . . . V 12 113.982 79.741 158.051 1 78.86 ? CMA HEC 501 D 1 HETATM 12 C CAA HEC . . . V 12 116.877 80.746 158.69 1 78.86 ? CAA HEC 501 D 1 HETATM 13 C CBA HEC . . . V 12 117.162 82.037 157.943 1 78.86 ? CBA HEC 501 D 1 HETATM 14 C CGA HEC . . . V 12 118.227 81.768 156.918 1 78.86 ? CGA HEC 501 D 1 HETATM 15 O O1A HEC . . . V 12 118.501 82.669 156.087 1 78.86 ? O1A HEC 501 D 1 HETATM 16 O O2A HEC . . . V 12 118.795 80.648 156.929 1 78.86 ? O2A HEC 501 D 1 HETATM 17 N NB HEC . . . V 12 111.903 80.604 162.917 1 78.86 ? NB HEC 501 D 1 HETATM 18 C C1B HEC . . . V 12 111.738 80.069 161.667 1 78.86 ? C1B HEC 501 D 1 HETATM 19 C C2B HEC . . . V 12 111.021 78.825 161.78 1 78.86 ? C2B HEC 501 D 1 HETATM 20 C C3B HEC . . . V 12 110.713 78.641 163.061 1 78.86 ? C3B HEC 501 D 1 HETATM 21 C C4B HEC . . . V 12 111.272 79.757 163.797 1 78.86 ? C4B HEC 501 D 1 HETATM 22 C CMB HEC . . . V 12 110.653 77.92 160.59 1 78.86 ? CMB HEC 501 D 1 HETATM 23 C CAB HEC . . . V 12 109.955 77.435 163.665 1 78.86 ? CAB HEC 501 D 1 HETATM 24 C CBB HEC . . . V 12 108.61 77.159 162.958 1 78.86 ? CBB HEC 501 D 1 HETATM 25 N NC HEC . . . V 12 113.109 81.511 165.174 1 78.86 ? NC HEC 501 D 1 HETATM 26 C C1C HEC . . . V 12 112.059 80.853 165.777 1 78.86 ? C1C HEC 501 D 1 HETATM 27 C C2C HEC . . . V 12 111.972 81.29 167.151 1 78.86 ? C2C HEC 501 D 1 HETATM 28 C C3C HEC . . . V 12 113.005 82.097 167.379 1 78.86 ? C3C HEC 501 D 1 HETATM 29 C C4C HEC . . . V 12 113.71 82.283 166.139 1 78.86 ? C4C HEC 501 D 1 HETATM 30 C CMC HEC . . . V 12 110.993 80.734 168.203 1 78.86 ? CMC HEC 501 D 1 HETATM 31 C CAC HEC . . . V 12 113.379 82.786 168.699 1 78.86 ? CAC HEC 501 D 1 HETATM 32 C CBC HEC . . . V 12 113.727 81.709 169.746 1 78.86 ? CBC HEC 501 D 1 HETATM 33 N ND HEC . . . V 12 115.473 82.445 163.703 1 78.86 ? ND HEC 501 D 1 HETATM 34 C C1D HEC . . . V 12 115.632 83.136 164.892 1 78.86 ? C1D HEC 501 D 1 HETATM 35 C C2D HEC . . . V 12 116.835 83.92 164.827 1 78.86 ? C2D HEC 501 D 1 HETATM 36 C C3D HEC . . . V 12 117.429 83.639 163.448 1 78.86 ? C3D HEC 501 D 1 HETATM 37 C C4D HEC . . . V 12 116.511 82.717 162.822 1 78.86 ? C4D HEC 501 D 1 HETATM 38 C CMD HEC . . . V 12 117.403 84.838 165.927 1 78.86 ? CMD HEC 501 D 1 HETATM 39 C CAD HEC . . . V 12 118.725 84.238 162.868 1 78.86 ? CAD HEC 501 D 1 HETATM 40 C CBD HEC . . . V 12 119.642 83.134 162.36 1 78.86 ? CBD HEC 501 D 1 HETATM 41 C CGD HEC . . . V 12 120.953 83.751 161.961 1 78.86 ? CGD HEC 501 D 1 HETATM 42 O O1D HEC . . . V 12 121.856 83.006 161.509 1 78.86 ? O1D HEC 501 D 1 HETATM 43 O O2D HEC . . . V 12 121.095 84.992 162.097 1 78.86 ? O2D HEC 501 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 96 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #