data_6FO6
#
_model_server_result.job_id            vSUZwLJe8tXBfBUPBgm4nw 
_model_server_result.datetime_utc      '2024-11-23 13:23:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fo6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":502}' 
#
_entry.id    6FO6 
#
_exptl.entry_id    6FO6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6FO6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FO6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 S N N 
? 10 T N N 
? 10 W N N 
? 10 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 222 E CYS 144 1_555 A SG CYS 238 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 H SG CYS 37 H CYS 24 1_555 H SG CYS 81 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 H SG CYS 53 H CYS 40 1_555 H SG CYS 67 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 J SG CYS 222 R CYS 144 1_555 J SG CYS 238 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 Q SG CYS 37 U CYS 24 1_555 Q SG CYS 81 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 Q SG CYS 53 U CYS 40 1_555 Q SG CYS 67 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 D NE2 HIS 83 C HIS 83 1_555 S FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc2 D NE2 HIS 97 C HIS 97 1_555 T FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc3 D NE2 HIS 182 C HIS 182 1_555 S FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc4 D NE2 HIS 196 C HIS 196 1_555 T FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc5 E NE2 HIS 125 D HIS 41 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc6 M NE2 HIS 83 P HIS 83 1_555 W FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc7 M NE2 HIS 97 P HIS 97 1_555 X FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc8 M NE2 HIS 182 P HIS 182 1_555 W FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc9 M NE2 HIS 196 P HIS 196 1_555 X FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc10 N NE2 HIS 125 Q HIS 41 1_555 Z FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 264 n n 
CHA C4D HEM doub 265 n n 
CHA HHA HEM sing 266 n n 
CHB C4A HEM sing 267 n n 
CHB C1B HEM doub 268 n n 
CHB HHB HEM sing 269 n n 
CHC C4B HEM sing 270 n n 
CHC C1C HEM doub 271 n n 
CHC HHC HEM sing 272 n n 
CHD C4C HEM doub 273 n n 
CHD C1D HEM sing 274 n n 
CHD HHD HEM sing 275 n n 
C1A C2A HEM doub 276 n y 
C1A NA HEM sing 277 n y 
C2A C3A HEM sing 278 n y 
C2A CAA HEM sing 279 n n 
C3A C4A HEM doub 280 n y 
C3A CMA HEM sing 281 n n 
C4A NA HEM sing 282 n y 
CMA HMA HEM sing 283 n n 
CMA HMAA HEM sing 284 n n 
CMA HMAB HEM sing 285 n n 
CAA CBA HEM sing 286 n n 
CAA HAA HEM sing 287 n n 
CAA HAAA HEM sing 288 n n 
CBA CGA HEM sing 289 n n 
CBA HBA HEM sing 290 n n 
CBA HBAA HEM sing 291 n n 
CGA O1A HEM doub 292 n n 
CGA O2A HEM sing 293 n n 
C1B C2B HEM sing 294 n n 
C1B NB HEM sing 295 n n 
C2B C3B HEM doub 296 n n 
C2B CMB HEM sing 297 n n 
C3B C4B HEM sing 298 n n 
C3B CAB HEM sing 299 n n 
C4B NB HEM doub 300 n n 
CMB HMB HEM sing 301 n n 
CMB HMBA HEM sing 302 n n 
CMB HMBB HEM sing 303 n n 
CAB CBB HEM doub 304 n n 
CAB HAB HEM sing 305 n n 
CBB HBB HEM sing 306 n n 
CBB HBBA HEM sing 307 n n 
C1C C2C HEM sing 308 n y 
C1C NC HEM sing 309 n y 
C2C C3C HEM doub 310 n y 
C2C CMC HEM sing 311 n n 
C3C C4C HEM sing 312 n y 
C3C CAC HEM sing 313 n n 
C4C NC HEM sing 314 n y 
CMC HMC HEM sing 315 n n 
CMC HMCA HEM sing 316 n n 
CMC HMCB HEM sing 317 n n 
CAC CBC HEM doub 318 n n 
CAC HAC HEM sing 319 n n 
CBC HBC HEM sing 320 n n 
CBC HBCA HEM sing 321 n n 
C1D C2D HEM sing 322 n n 
C1D ND HEM doub 323 n n 
C2D C3D HEM doub 324 n n 
C2D CMD HEM sing 325 n n 
C3D C4D HEM sing 326 n n 
C3D CAD HEM sing 327 n n 
C4D ND HEM sing 328 n n 
CMD HMD HEM sing 329 n n 
CMD HMDA HEM sing 330 n n 
CMD HMDB HEM sing 331 n n 
CAD CBD HEM sing 332 n n 
CAD HAD HEM sing 333 n n 
CAD HADA HEM sing 334 n n 
CBD CGD HEM sing 335 n n 
CBD HBD HEM sing 336 n n 
CBD HBDA HEM sing 337 n n 
CGD O1D HEM doub 338 n n 
CGD O2D HEM sing 339 n n 
O2A H2A HEM sing 340 n n 
O2D H2D HEM sing 341 n n 
FE NA HEM sing 342 n n 
FE NB HEM sing 343 n n 
FE NC HEM sing 344 n n 
FE ND HEM sing 345 n n 
#
_atom_sites.entry_id                     6FO6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 10 HEM C 1 501 501 HEM HEM . 
T 10 HEM C 1 502 502 HEM HEM . 
U 11 DY2 C 1 503 1 DY2 SCK . 
V 12 HEC D 1 501 501 HEC HEC . 
W 10 HEM P 1 501 501 HEM HEM . 
X 10 HEM P 1 502 502 HEM HEM . 
Y 11 DY2 P 1 503 1 DY2 SCK . 
Z 12 HEC Q 1 501 501 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . X 10 98.382 121.452 110.808 1 37.07 ? CHA HEM 502 P 1 
HETATM 2 C CHB HEM . . . X 10 100.873 119.676 114.515 1 37.07 ? CHB HEM 502 P 1 
HETATM 3 C CHC HEM . . . X 10 96.889 120.015 117.171 1 37.07 ? CHC HEM 502 P 1 
HETATM 4 C CHD HEM . . . X 10 94.266 120.909 113.209 1 37.07 ? CHD HEM 502 P 1 
HETATM 5 C C1A HEM . . . X 10 99.411 121.109 111.638 1 37.07 ? C1A HEM 502 P 1 
HETATM 6 C C2A HEM . . . X 10 100.802 121.387 111.398 1 37.07 ? C2A HEM 502 P 1 
HETATM 7 C C3A HEM . . . X 10 101.494 120.901 112.415 1 37.07 ? C3A HEM 502 P 1 
HETATM 8 C C4A HEM . . . X 10 100.564 120.292 113.335 1 37.07 ? C4A HEM 502 P 1 
HETATM 9 C CMA HEM . . . X 10 103.02 120.972 112.578 1 37.07 ? CMA HEM 502 P 1 
HETATM 10 C CAA HEM . . . X 10 101.382 122.127 110.181 1 37.07 ? CAA HEM 502 P 1 
HETATM 11 C CBA HEM . . . X 10 101.39 123.615 110.495 1 37.07 ? CBA HEM 502 P 1 
HETATM 12 C CGA HEM . . . X 10 100.021 124.187 110.263 1 37.07 ? CGA HEM 502 P 1 
HETATM 13 O O1A HEM . . . X 10 99.557 125.012 111.089 1 37.07 ? O1A HEM 502 P 1 
HETATM 14 O O2A HEM . . . X 10 99.385 123.803 109.253 1 37.07 ? O2A HEM 502 P 1 
HETATM 15 C C1B HEM . . . X 10 99.988 119.54 115.55 1 37.07 ? C1B HEM 502 P 1 
HETATM 16 C C2B HEM . . . X 10 100.226 118.855 116.796 1 37.07 ? C2B HEM 502 P 1 
HETATM 17 C C3B HEM . . . X 10 99.117 118.954 117.535 1 37.07 ? C3B HEM 502 P 1 
HETATM 18 C C4B HEM . . . X 10 98.155 119.698 116.769 1 37.07 ? C4B HEM 502 P 1 
HETATM 19 C CMB HEM . . . X 10 101.557 118.161 117.146 1 37.07 ? CMB HEM 502 P 1 
HETATM 20 C CAB HEM . . . X 10 98.81 118.405 118.943 1 37.07 ? CAB HEM 502 P 1 
HETATM 21 C CBB HEM . . . X 10 99.648 117.628 119.633 1 37.07 ? CBB HEM 502 P 1 
HETATM 22 C C1C HEM . . . X 10 95.852 120.274 116.315 1 37.07 ? C1C HEM 502 P 1 
HETATM 23 C C2C HEM . . . X 10 94.479 120.406 116.715 1 37.07 ? C2C HEM 502 P 1 
HETATM 24 C C3C HEM . . . X 10 93.759 120.653 115.623 1 37.07 ? C3C HEM 502 P 1 
HETATM 25 C C4C HEM . . . X 10 94.656 120.679 114.501 1 37.07 ? C4C HEM 502 P 1 
HETATM 26 C CMC HEM . . . X 10 94.014 120.278 118.175 1 37.07 ? CMC HEM 502 P 1 
HETATM 27 C CAC HEM . . . X 10 92.245 120.882 115.465 1 37.07 ? CAC HEM 502 P 1 
HETATM 28 C CBC HEM . . . X 10 91.394 120.889 116.489 1 37.07 ? CBC HEM 502 P 1 
HETATM 29 C C1D HEM . . . X 10 95.134 121.141 112.186 1 37.07 ? C1D HEM 502 P 1 
HETATM 30 C C2D HEM . . . X 10 94.828 121.411 110.804 1 37.07 ? C2D HEM 502 P 1 
HETATM 31 C C3D HEM . . . X 10 95.978 121.551 110.159 1 37.07 ? C3D HEM 502 P 1 
HETATM 32 C C4D HEM . . . X 10 97.049 121.382 111.102 1 37.07 ? C4D HEM 502 P 1 
HETATM 33 C CMD HEM . . . X 10 93.421 121.516 110.194 1 37.07 ? CMD HEM 502 P 1 
HETATM 34 C CAD HEM . . . X 10 96.185 121.858 108.672 1 37.07 ? CAD HEM 502 P 1 
HETATM 35 C CBD HEM . . . X 10 95.612 123.227 108.392 1 37.07 ? CBD HEM 502 P 1 
HETATM 36 C CGD HEM . . . X 10 96.238 123.768 107.14 1 37.07 ? CGD HEM 502 P 1 
HETATM 37 O O1D HEM . . . X 10 95.689 124.75 106.591 1 37.07 ? O1D HEM 502 P 1 
HETATM 38 O O2D HEM . . . X 10 97.28 123.243 106.688 1 37.07 ? O2D HEM 502 P 1 
HETATM 39 N NA HEM . . . X 10 99.295 120.434 112.83 1 37.07 ? NA HEM 502 P 1 
HETATM 40 N NB HEM . . . X 10 98.714 120.042 115.565 1 37.07 ? NB HEM 502 P 1 
HETATM 41 N NC HEM . . . X 10 95.935 120.446 114.951 1 37.07 ? NC HEM 502 P 1 
HETATM 42 N ND HEM . . . X 10 96.506 121.105 112.336 1 37.07 ? ND HEM 502 P 1 
HETATM 43 FE FE HEM . . . X 10 97.658 120.28 113.93 1 37.07 ? FE HEM 502 P 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    115 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#