data_6FOC # _model_server_result.job_id bGlFRp224iADkTXOu-HWmw _model_server_result.datetime_utc '2024-11-06 10:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6foc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":600}' # _entry.id 6FOC # _exptl.entry_id 6FOC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FOC _cell.length_a 105.189 _cell.length_b 105.189 _cell.length_c 628.624 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 K N N ? 5 M N N ? 5 O N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 179 A THR 179 1_555 J MG MG . A MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc2 I O2B ADP . A ADP 1600 1_555 J MG MG . A MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 J MG MG . A MG 1601 1_555 T O HOH . A HOH 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc4 J MG MG . A MG 1601 1_555 T O HOH . A HOH 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc5 J MG MG . A MG 1601 1_555 T O HOH . A HOH 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 J MG MG . A MG 1601 1_555 T O HOH . A HOH 1704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc7 B OG1 THR 179 B THR 179 1_555 L MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc8 K O2B ADP . B ADP 600 1_555 L MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc9 L MG MG . B MG 601 1_555 U O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc10 L MG MG . B MG 601 1_555 U O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc11 L MG MG . B MG 601 1_555 U O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 L MG MG . B MG 601 1_555 U O HOH . B HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc13 C OG1 THR 179 C THR 179 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc14 M O2B ADP . C ADP 600 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc15 N MG MG . C MG 601 1_555 V O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc16 N MG MG . C MG 601 1_555 V O HOH . C HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc17 N MG MG . C MG 601 1_555 V O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc18 N MG MG . C MG 601 1_555 V O HOH . C HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc19 D OG1 THR 167 D THR 167 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc20 O O2B ADP . D ADP 600 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc21 P MG MG . D MG 601 1_555 W O HOH . D HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc22 P MG MG . D MG 601 1_555 W O HOH . D HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc23 P MG MG . D MG 601 1_555 W O HOH . D HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc24 P MG MG . D MG 601 1_555 W O HOH . D HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc25 F OG1 THR 167 F THR 167 1_555 S MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc26 R O2B ADP . F ADP 600 1_555 S MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc27 S MG MG . F MG 601 1_555 X O HOH . F HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc28 S MG MG . F MG 601 1_555 X O HOH . F HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc29 S MG MG . F MG 601 1_555 X O HOH . F HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc30 S MG MG . F MG 601 1_555 X O HOH . F HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6FOC _atom_sites.fract_transf_matrix[1][1] 0.009507 _atom_sites.fract_transf_matrix[1][2] 0.005489 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 ADP A 1 1600 600 ADP ADP . J 6 MG A 1 1601 601 MG MG . K 5 ADP B 1 600 600 ADP ADP . L 6 MG B 1 601 601 MG MG . M 5 ADP C 1 600 600 ADP ADP . N 6 MG C 1 601 601 MG MG . O 5 ADP D 1 600 600 ADP ADP . P 6 MG D 1 601 601 MG MG . Q 7 PO4 E 1 602 602 PO4 PO4 . R 5 ADP F 1 600 600 ADP ADP . S 6 MG F 1 601 601 MG MG . T 8 HOH A 1 1701 701 HOH HOH . T 8 HOH A 2 1702 702 HOH HOH . T 8 HOH A 3 1703 703 HOH HOH . T 8 HOH A 4 1704 704 HOH HOH . U 8 HOH B 1 701 701 HOH HOH . U 8 HOH B 2 702 702 HOH HOH . U 8 HOH B 3 703 703 HOH HOH . U 8 HOH B 4 704 704 HOH HOH . V 8 HOH C 1 701 701 HOH HOH . V 8 HOH C 2 702 702 HOH HOH . V 8 HOH C 3 703 703 HOH HOH . V 8 HOH C 4 704 704 HOH HOH . W 8 HOH D 1 701 701 HOH HOH . W 8 HOH D 2 702 702 HOH HOH . W 8 HOH D 3 703 703 HOH HOH . W 8 HOH D 4 704 704 HOH HOH . X 8 HOH F 1 701 701 HOH HOH . X 8 HOH F 2 702 702 HOH HOH . X 8 HOH F 3 703 703 HOH HOH . X 8 HOH F 4 704 704 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . R 5 7.038 7.306 -38.428 1 106.68 ? PB ADP 600 F 1 HETATM 2 O O1B ADP . . . R 5 8.252 8.033 -38.954 1 107.88 ? O1B ADP 600 F 1 HETATM 3 O O2B ADP . . . R 5 6.446 7.946 -37.198 1 107.28 ? O2B ADP 600 F 1 HETATM 4 O O3B ADP . . . R 5 7.195 5.808 -38.326 1 105.53 ? O3B ADP 600 F 1 HETATM 5 P PA ADP . . . R 5 5.133 8.87 -39.801 1 109.31 ? PA ADP 600 F 1 HETATM 6 O O1A ADP . . . R 5 6.131 10.001 -39.751 1 111.3 ? O1A ADP 600 F 1 HETATM 7 O O2A ADP . . . R 5 3.955 8.874 -38.859 1 109.47 ? O2A ADP 600 F 1 HETATM 8 O O3A ADP . . . R 5 5.924 7.482 -39.583 1 107.66 ? O3A ADP 600 F 1 HETATM 9 O O5' ADP . . . R 5 4.578 8.758 -41.312 1 109.82 ? O5' ADP 600 F 1 HETATM 10 C C5' ADP . . . R 5 5.447 9.011 -42.418 1 111.08 ? C5' ADP 600 F 1 HETATM 11 C C4' ADP . . . R 5 4.71 8.915 -43.753 1 112.14 ? C4' ADP 600 F 1 HETATM 12 O O4' ADP . . . R 5 3.662 7.941 -43.723 1 112.94 ? O4' ADP 600 F 1 HETATM 13 C C3' ADP . . . R 5 4.058 10.231 -44.156 1 112.26 ? C3' ADP 600 F 1 HETATM 14 O O3' ADP . . . R 5 4.89 10.953 -45.072 1 112.61 ? O3' ADP 600 F 1 HETATM 15 C C2' ADP . . . R 5 2.727 9.852 -44.781 1 112.11 ? C2' ADP 600 F 1 HETATM 16 O O2' ADP . . . R 5 2.675 10.193 -46.171 1 111.09 ? O2' ADP 600 F 1 HETATM 17 C C1' ADP . . . R 5 2.597 8.346 -44.593 1 112.31 ? C1' ADP 600 F 1 HETATM 18 N N9 ADP . . . R 5 1.261 8.007 -44.033 1 112.31 ? N9 ADP 600 F 1 HETATM 19 C C8 ADP . . . R 5 1.004 7.509 -42.805 1 112.16 ? C8 ADP 600 F 1 HETATM 20 N N7 ADP . . . R 5 -0.331 7.319 -42.633 1 111.79 ? N7 ADP 600 F 1 HETATM 21 C C5 ADP . . . R 5 -0.948 7.7 -43.765 1 112.46 ? C5 ADP 600 F 1 HETATM 22 C C6 ADP . . . R 5 -2.346 7.761 -44.259 1 113.02 ? C6 ADP 600 F 1 HETATM 23 N N6 ADP . . . R 5 -3.375 7.364 -43.475 1 113.75 ? N6 ADP 600 F 1 HETATM 24 N N1 ADP . . . R 5 -2.557 8.227 -45.514 1 112.66 ? N1 ADP 600 F 1 HETATM 25 C C2 ADP . . . R 5 -1.542 8.626 -46.309 1 112.45 ? C2 ADP 600 F 1 HETATM 26 N N3 ADP . . . R 5 -0.251 8.596 -45.919 1 112.49 ? N3 ADP 600 F 1 HETATM 27 C C4 ADP . . . R 5 0.106 8.152 -44.686 1 112.45 ? C4 ADP 600 F 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #