data_6FOD # _model_server_result.job_id lAU1hUOeGM3IV50B0xE7pA _model_server_result.datetime_utc '2025-01-02 22:54:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4000}' # _entry.id 6FOD # _exptl.entry_id 6FOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.578 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{R},3~{S},5~{Z})-4-methylidene-5-[(~{E})-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]pent-2-enylidene]cyclohexane-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FOD _cell.length_a 65.93 _cell.length_b 65.93 _cell.length_c 264.2 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 32.965 57.097055 44.033333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H38 O3' _chem_comp.formula_weight 398.578 _chem_comp.id E05 _chem_comp.mon_nstd_flag . _chem_comp.name (1~{R},3~{S},5~{Z})-4-methylidene-5-[(~{E})-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]pent-2-enylidene]cyclohexane-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C10 E05 sing 83 n n C11 C10 E05 sing 84 n n C10 C13 E05 sing 85 n n C10 O9 E05 sing 86 n n C13 C14 E05 sing 87 n n C14 C15 E05 sing 88 n n C15 C16 E05 sing 89 n n C16 C17 E05 sing 90 n n C6 C7 E05 sing 91 n n C28 C27 E05 doub 92 n n C17 C18 E05 sing 93 n n C34 C26 E05 sing 94 n n C34 C32 E05 sing 95 n n C27 C26 E05 sing 96 n n C27 C29 E05 sing 97 n n C31 C32 E05 sing 98 n n C31 C29 E05 sing 99 n n O30 C29 E05 sing 100 n n C26 C25 E05 doub 101 z n C7 C8 E05 sing 102 n n C19 C18 E05 doub 103 n y C19 C23 E05 sing 104 n y C25 C24 E05 sing 105 n n C32 O33 E05 sing 106 n n C18 C20 E05 sing 107 n y C8 C24 E05 doub 108 e n C8 C23 E05 sing 109 n n C23 C22 E05 doub 110 n y C20 C21 E05 doub 111 n y C22 C21 E05 sing 112 n y C6 H1 E05 sing 113 n n C6 H2 E05 sing 114 n n C6 H3 E05 sing 115 n n C7 H4 E05 sing 116 n n C7 H5 E05 sing 117 n n O9 H6 E05 sing 118 n n C11 H7 E05 sing 119 n n C11 H8 E05 sing 120 n n C11 H9 E05 sing 121 n n C12 H10 E05 sing 122 n n C12 H11 E05 sing 123 n n C12 H12 E05 sing 124 n n C13 H13 E05 sing 125 n n C13 H14 E05 sing 126 n n C14 H15 E05 sing 127 n n C14 H16 E05 sing 128 n n C15 H17 E05 sing 129 n n C15 H18 E05 sing 130 n n C16 H19 E05 sing 131 n n C16 H20 E05 sing 132 n n C17 H21 E05 sing 133 n n C17 H22 E05 sing 134 n n C19 H23 E05 sing 135 n n C20 H24 E05 sing 136 n n C21 H25 E05 sing 137 n n C22 H26 E05 sing 138 n n C24 H27 E05 sing 139 n n C25 H28 E05 sing 140 n n C28 H29 E05 sing 141 n n C28 H30 E05 sing 142 n n C29 H31 E05 sing 143 n n O30 H32 E05 sing 144 n n C31 H33 E05 sing 145 n n C31 H34 E05 sing 146 n n C32 H35 E05 sing 147 n n O33 H36 E05 sing 148 n n C34 H37 E05 sing 149 n n C34 H38 E05 sing 150 n n # _atom_sites.entry_id 6FOD _atom_sites.fract_transf_matrix[1][1] 0.015168 _atom_sites.fract_transf_matrix[1][2] 0.008757 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 E05 A 1 4000 4000 E05 LX1 . D 4 HOH A 1 4101 53 HOH HOH . D 4 HOH A 2 4102 1 HOH HOH . D 4 HOH A 3 4103 3 HOH HOH . D 4 HOH A 4 4104 12 HOH HOH . D 4 HOH A 5 4105 60 HOH HOH . D 4 HOH A 6 4106 55 HOH HOH . D 4 HOH A 7 4107 34 HOH HOH . D 4 HOH A 8 4108 31 HOH HOH . D 4 HOH A 9 4109 2 HOH HOH . D 4 HOH A 10 4110 29 HOH HOH . D 4 HOH A 11 4111 54 HOH HOH . D 4 HOH A 12 4112 7 HOH HOH . D 4 HOH A 13 4113 32 HOH HOH . D 4 HOH A 14 4114 16 HOH HOH . D 4 HOH A 15 4115 4 HOH HOH . D 4 HOH A 16 4116 8 HOH HOH . D 4 HOH A 17 4117 27 HOH HOH . D 4 HOH A 18 4118 9 HOH HOH . D 4 HOH A 19 4119 6 HOH HOH . D 4 HOH A 20 4120 13 HOH HOH . D 4 HOH A 21 4121 35 HOH HOH . D 4 HOH A 22 4122 30 HOH HOH . D 4 HOH A 23 4123 17 HOH HOH . D 4 HOH A 24 4124 14 HOH HOH . D 4 HOH A 25 4125 56 HOH HOH . D 4 HOH A 26 4126 22 HOH HOH . D 4 HOH A 27 4127 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 E05 . . . C 3 -1.782 34.115 37.175 1 63.77 ? C6 E05 4000 A 1 HETATM 2 C C7 E05 . . . C 3 -1.319 33.95 38.641 1 65.26 ? C7 E05 4000 A 1 HETATM 3 C C8 E05 . . . C 3 0.075 34.457 38.926 1 67.21 ? C8 E05 4000 A 1 HETATM 4 O O9 E05 . . . C 3 5.163 27.664 34.148 1 69.99 ? O9 E05 4000 A 1 HETATM 5 C C10 E05 . . . C 3 5.012 28.808 33.29 1 72.61 ? C10 E05 4000 A 1 HETATM 6 C C11 E05 . . . C 3 6.402 29.234 32.837 1 71.93 ? C11 E05 4000 A 1 HETATM 7 C C12 E05 . . . C 3 4.166 28.39 32.095 1 72.86 ? C12 E05 4000 A 1 HETATM 8 C C13 E05 . . . C 3 4.342 29.907 34.116 1 73.78 ? C13 E05 4000 A 1 HETATM 9 C C14 E05 . . . C 3 2.852 29.784 34.436 1 73.12 ? C14 E05 4000 A 1 HETATM 10 C C15 E05 . . . C 3 2.466 30.418 35.757 1 73.17 ? C15 E05 4000 A 1 HETATM 11 C C16 E05 . . . C 3 2.68 29.502 36.949 1 77.78 ? C16 E05 4000 A 1 HETATM 12 C C17 E05 . . . C 3 1.772 29.785 38.157 1 81.81 ? C17 E05 4000 A 1 HETATM 13 C C18 E05 . . . C 3 1.939 31.153 38.774 1 80.52 ? C18 E05 4000 A 1 HETATM 14 C C19 E05 . . . C 3 0.918 32.101 38.686 1 77.55 ? C19 E05 4000 A 1 HETATM 15 C C20 E05 . . . C 3 3.139 31.508 39.373 1 81.89 ? C20 E05 4000 A 1 HETATM 16 C C21 E05 . . . C 3 3.323 32.781 39.882 1 83.42 ? C21 E05 4000 A 1 HETATM 17 C C22 E05 . . . C 3 2.317 33.725 39.774 1 80.79 ? C22 E05 4000 A 1 HETATM 18 C C23 E05 . . . C 3 1.107 33.402 39.156 1 75.31 ? C23 E05 4000 A 1 HETATM 19 C C24 E05 . . . C 3 0.517 35.754 38.971 1 61.44 ? C24 E05 4000 A 1 HETATM 20 C C25 E05 . . . C 3 -0.118 37.004 38.736 1 58.7 ? C25 E05 4000 A 1 HETATM 21 C C26 E05 . . . C 3 0.494 38.2 38.451 1 55.96 ? C26 E05 4000 A 1 HETATM 22 C C27 E05 . . . C 3 1.949 38.382 38.248 1 56.67 ? C27 E05 4000 A 1 HETATM 23 C C28 E05 . . . C 3 2.686 37.498 37.589 1 56.24 ? C28 E05 4000 A 1 HETATM 24 C C29 E05 . . . C 3 2.503 39.672 38.811 1 54.9 ? C29 E05 4000 A 1 HETATM 25 O O30 E05 . . . C 3 3.847 39.815 38.379 1 56.68 ? O30 E05 4000 A 1 HETATM 26 C C31 E05 . . . C 3 1.674 40.846 38.307 1 50.79 ? C31 E05 4000 A 1 HETATM 27 C C32 E05 . . . C 3 0.238 40.706 38.774 1 52.58 ? C32 E05 4000 A 1 HETATM 28 O O33 E05 . . . C 3 0.174 40.7 40.201 1 53.59 ? O33 E05 4000 A 1 HETATM 29 C C34 E05 . . . C 3 -0.362 39.428 38.212 1 53.02 ? C34 E05 4000 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 29 #