data_6FP4 # _model_server_result.job_id lG2oZPm0mjW2YzR57YicIQ _model_server_result.datetime_utc '2025-01-10 15:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 6FP4 # _exptl.entry_id 6FP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.78 _cell.angle_gamma 90 _cell.entry_id 6FP4 _cell.length_a 142.316 _cell.length_b 101.584 _cell.length_c 58.783 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_757 -x+2,y,-z+2 -1 0 0 0 1 0 0 0 -1 239.111177 0 108.39566 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 31 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 154 A CYS 154 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc1 A OG1 THR 153 A THR 153 1_555 F NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc2 A OD2 ASP 433 A ASP 433 1_555 F NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc3 B O1A FAD . A FAD 601 1_555 F NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FP4 _atom_sites.fract_transf_matrix[1][1] 0.007027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002951 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1594 FAD FAD . C 3 PGE A 1 602 1 PGE PGE . D 3 PGE A 1 603 2 PGE PGE . E 4 E1T A 1 604 1 E1T UNL . F 5 NA A 1 605 1 NA NA . G 6 250 A 1 606 1 250 250 . H 7 HOH A 1 701 12 HOH HOH . H 7 HOH A 2 702 116 HOH HOH . H 7 HOH A 3 703 30 HOH HOH . H 7 HOH A 4 704 15 HOH HOH . H 7 HOH A 5 705 27 HOH HOH . H 7 HOH A 6 706 47 HOH HOH . H 7 HOH A 7 707 106 HOH HOH . H 7 HOH A 8 708 60 HOH HOH . H 7 HOH A 9 709 16 HOH HOH . H 7 HOH A 10 710 102 HOH HOH . H 7 HOH A 11 711 17 HOH HOH . H 7 HOH A 12 712 11 HOH HOH . H 7 HOH A 13 713 39 HOH HOH . H 7 HOH A 14 714 111 HOH HOH . H 7 HOH A 15 715 113 HOH HOH . H 7 HOH A 16 716 18 HOH HOH . H 7 HOH A 17 717 7 HOH HOH . H 7 HOH A 18 718 45 HOH HOH . H 7 HOH A 19 719 46 HOH HOH . H 7 HOH A 20 720 34 HOH HOH . H 7 HOH A 21 721 14 HOH HOH . H 7 HOH A 22 722 20 HOH HOH . H 7 HOH A 23 723 33 HOH HOH . H 7 HOH A 24 724 8 HOH HOH . H 7 HOH A 25 725 154 HOH HOH . H 7 HOH A 26 726 5 HOH HOH . H 7 HOH A 27 727 130 HOH HOH . H 7 HOH A 28 728 105 HOH HOH . H 7 HOH A 29 729 1 HOH HOH . H 7 HOH A 30 730 25 HOH HOH . H 7 HOH A 31 731 65 HOH HOH . H 7 HOH A 32 732 94 HOH HOH . H 7 HOH A 33 733 62 HOH HOH . H 7 HOH A 34 734 107 HOH HOH . H 7 HOH A 35 735 42 HOH HOH . H 7 HOH A 36 736 57 HOH HOH . H 7 HOH A 37 737 4 HOH HOH . H 7 HOH A 38 738 137 HOH HOH . H 7 HOH A 39 739 167 HOH HOH . H 7 HOH A 40 740 19 HOH HOH . H 7 HOH A 41 741 104 HOH HOH . H 7 HOH A 42 742 38 HOH HOH . H 7 HOH A 43 743 99 HOH HOH . H 7 HOH A 44 744 75 HOH HOH . H 7 HOH A 45 745 49 HOH HOH . H 7 HOH A 46 746 153 HOH HOH . H 7 HOH A 47 747 85 HOH HOH . H 7 HOH A 48 748 108 HOH HOH . H 7 HOH A 49 749 100 HOH HOH . H 7 HOH A 50 750 41 HOH HOH . H 7 HOH A 51 751 23 HOH HOH . H 7 HOH A 52 752 101 HOH HOH . H 7 HOH A 53 753 120 HOH HOH . H 7 HOH A 54 754 112 HOH HOH . H 7 HOH A 55 755 125 HOH HOH . H 7 HOH A 56 756 157 HOH HOH . H 7 HOH A 57 757 136 HOH HOH . H 7 HOH A 58 758 6 HOH HOH . H 7 HOH A 59 759 56 HOH HOH . H 7 HOH A 60 760 61 HOH HOH . H 7 HOH A 61 761 9 HOH HOH . H 7 HOH A 62 762 48 HOH HOH . H 7 HOH A 63 763 81 HOH HOH . H 7 HOH A 64 764 22 HOH HOH . H 7 HOH A 65 765 98 HOH HOH . H 7 HOH A 66 766 2 HOH HOH . H 7 HOH A 67 767 171 HOH HOH . H 7 HOH A 68 768 95 HOH HOH . H 7 HOH A 69 769 159 HOH HOH . H 7 HOH A 70 770 63 HOH HOH . H 7 HOH A 71 771 118 HOH HOH . H 7 HOH A 72 772 64 HOH HOH . H 7 HOH A 73 773 36 HOH HOH . H 7 HOH A 74 774 74 HOH HOH . H 7 HOH A 75 775 141 HOH HOH . H 7 HOH A 76 776 121 HOH HOH . H 7 HOH A 77 777 145 HOH HOH . H 7 HOH A 78 778 10 HOH HOH . H 7 HOH A 79 779 72 HOH HOH . H 7 HOH A 80 780 71 HOH HOH . H 7 HOH A 81 781 134 HOH HOH . H 7 HOH A 82 782 68 HOH HOH . H 7 HOH A 83 783 50 HOH HOH . H 7 HOH A 84 784 176 HOH HOH . H 7 HOH A 85 785 177 HOH HOH . H 7 HOH A 86 786 52 HOH HOH . H 7 HOH A 87 787 70 HOH HOH . H 7 HOH A 88 788 83 HOH HOH . H 7 HOH A 89 789 87 HOH HOH . H 7 HOH A 90 790 88 HOH HOH . H 7 HOH A 91 791 82 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 139.097 _atom_site.Cartn_y 6.17 _atom_site.Cartn_z 71.844 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 605 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #