data_6FPM # _model_server_result.job_id D981oBOamF5PMgWJjqpWNQ _model_server_result.datetime_utc '2024-11-23 21:24:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fpm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6FPM # _exptl.entry_id 6FPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRACYCLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FPM _cell.length_a 68.71 _cell.length_b 68.71 _cell.length_c 180.47 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 68.71 68.71 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O11 TAC . A TAC 301 1_555 C MG MG . A MG 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc2 B O11 TAC . A TAC 301 1_555 C MG MG . A MG 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 B O12 TAC . A TAC 301 1_555 C MG MG . A MG 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 C MG MG . A MG 302 1_555 H O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc5 C MG MG . A MG 302 1_555 H O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc6 C MG MG . A MG 302 1_555 H O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C22 H24 N2 O8' _chem_comp.formula_weight 444.435 _chem_comp.id TAC _chem_comp.mon_nstd_flag . _chem_comp.name TETRACYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 TAC doub 277 n n C1 C2 TAC sing 278 n n C1 C1C TAC sing 279 n n C2 C21 TAC sing 280 n n C2 C3 TAC doub 281 n n C21 O21 TAC doub 282 n n C21 N21 TAC sing 283 n n N21 HN21 TAC sing 284 n n N21 HN22 TAC sing 285 n n C3 O3 TAC sing 286 n n C3 C4 TAC sing 287 n n O3 HO3 TAC sing 288 n n C4 N4 TAC sing 289 n n C4 C41 TAC sing 290 n n C4 H4 TAC sing 291 n n N4 C42 TAC sing 292 n n N4 C43 TAC sing 293 n n C42 H421 TAC sing 294 n n C42 H422 TAC sing 295 n n C42 H423 TAC sing 296 n n C43 H431 TAC sing 297 n n C43 H432 TAC sing 298 n n C43 H433 TAC sing 299 n n C41 C5 TAC sing 300 n n C41 C1C TAC sing 301 n n C41 H41 TAC sing 302 n n C5 C51 TAC sing 303 n n C5 H51A TAC sing 304 n n C5 H52 TAC sing 305 n n C51 C6 TAC sing 306 n n C51 C1B TAC sing 307 n n C51 H51 TAC sing 308 n n C6 C62 TAC sing 309 n n C6 O6 TAC sing 310 n n C6 C61 TAC sing 311 n n C62 H621 TAC sing 312 n n C62 H622 TAC sing 313 n n C62 H623 TAC sing 314 n n O6 HO6 TAC sing 315 n n C61 C7 TAC doub 316 n y C61 C1A TAC sing 317 n y C7 C8 TAC sing 318 n y C7 H7 TAC sing 319 n n C8 C9 TAC doub 320 n y C8 H8 TAC sing 321 n n C9 C10 TAC sing 322 n y C9 H9 TAC sing 323 n n C10 O10 TAC sing 324 n n C10 C1A TAC doub 325 n y O10 HO1 TAC sing 326 n n C1A C11 TAC sing 327 n n C11 O11 TAC doub 328 n n C11 C1B TAC sing 329 n n C1B C12 TAC doub 330 n n C12 O12 TAC sing 331 n n C12 C1C TAC sing 332 n n O12 HO2 TAC sing 333 n n C1C O1C TAC sing 334 n n O1C HOC TAC sing 335 n n # _atom_sites.entry_id 6FPM _atom_sites.fract_transf_matrix[1][1] 0.014554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TAC A 1 301 1209 TAC TAC . C 3 MG A 1 302 1210 MG MG . D 4 CL A 1 303 1211 CL CL . E 4 CL A 1 304 1212 CL CL . F 4 CL A 1 305 1213 CL CL . G 4 CL A 1 306 1214 CL CL . H 5 HOH A 1 401 2081 HOH HOH . H 5 HOH A 2 402 2009 HOH HOH . H 5 HOH A 3 403 2003 HOH HOH . H 5 HOH A 4 404 2001 HOH HOH . H 5 HOH A 5 405 2080 HOH HOH . H 5 HOH A 6 406 2073 HOH HOH . H 5 HOH A 7 407 2036 HOH HOH . H 5 HOH A 8 408 2047 HOH HOH . H 5 HOH A 9 409 2004 HOH HOH . H 5 HOH A 10 410 2002 HOH HOH . H 5 HOH A 11 411 2071 HOH HOH . H 5 HOH A 12 412 2035 HOH HOH . H 5 HOH A 13 413 2032 HOH HOH . H 5 HOH A 14 414 2048 HOH HOH . H 5 HOH A 15 415 2014 HOH HOH . H 5 HOH A 16 416 2063 HOH HOH . H 5 HOH A 17 417 2022 HOH HOH . H 5 HOH A 18 418 2031 HOH HOH . H 5 HOH A 19 419 2005 HOH HOH . H 5 HOH A 20 420 2029 HOH HOH . H 5 HOH A 21 421 2076 HOH HOH . H 5 HOH A 22 422 2072 HOH HOH . H 5 HOH A 23 423 2056 HOH HOH . H 5 HOH A 24 424 2007 HOH HOH . H 5 HOH A 25 425 2018 HOH HOH . H 5 HOH A 26 426 2055 HOH HOH . H 5 HOH A 27 427 2061 HOH HOH . H 5 HOH A 28 428 2038 HOH HOH . H 5 HOH A 29 429 2066 HOH HOH . H 5 HOH A 30 430 2079 HOH HOH . H 5 HOH A 31 431 2030 HOH HOH . H 5 HOH A 32 432 2067 HOH HOH . H 5 HOH A 33 433 2019 HOH HOH . H 5 HOH A 34 434 2020 HOH HOH . H 5 HOH A 35 435 2037 HOH HOH . H 5 HOH A 36 436 2075 HOH HOH . H 5 HOH A 37 437 2065 HOH HOH . H 5 HOH A 38 438 2016 HOH HOH . H 5 HOH A 39 439 2010 HOH HOH . H 5 HOH A 40 440 2068 HOH HOH . H 5 HOH A 41 441 2028 HOH HOH . H 5 HOH A 42 442 2057 HOH HOH . H 5 HOH A 43 443 2053 HOH HOH . H 5 HOH A 44 444 2060 HOH HOH . H 5 HOH A 45 445 2013 HOH HOH . H 5 HOH A 46 446 2012 HOH HOH . H 5 HOH A 47 447 2033 HOH HOH . H 5 HOH A 48 448 2077 HOH HOH . H 5 HOH A 49 449 2006 HOH HOH . H 5 HOH A 50 450 2050 HOH HOH . H 5 HOH A 51 451 2078 HOH HOH . H 5 HOH A 52 452 2017 HOH HOH . H 5 HOH A 53 453 2059 HOH HOH . H 5 HOH A 54 454 2045 HOH HOH . H 5 HOH A 55 455 2046 HOH HOH . H 5 HOH A 56 456 2008 HOH HOH . H 5 HOH A 57 457 2058 HOH HOH . H 5 HOH A 58 458 2074 HOH HOH . H 5 HOH A 59 459 2027 HOH HOH . H 5 HOH A 60 460 2021 HOH HOH . H 5 HOH A 61 461 2049 HOH HOH . H 5 HOH A 62 462 2044 HOH HOH . H 5 HOH A 63 463 2023 HOH HOH . H 5 HOH A 64 464 2015 HOH HOH . H 5 HOH A 65 465 2024 HOH HOH . H 5 HOH A 66 466 2069 HOH HOH . H 5 HOH A 67 467 2070 HOH HOH . H 5 HOH A 68 468 2062 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TAC . A . B 2 19.978 34.418 34.619 0.5 30.72 ? C1 TAC 301 A 1 HETATM 2 C C1 TAC . B . B 2 21.102 34.966 34.729 0.5 47.21 ? C1 TAC 301 A 1 HETATM 3 O O1 TAC . A . B 2 19.456 34.983 33.617 0.5 29.45 ? O1 TAC 301 A 1 HETATM 4 O O1 TAC . B . B 2 20.661 35.519 33.715 0.5 51.5 ? O1 TAC 301 A 1 HETATM 5 C C2 TAC . A . B 2 19.396 33.375 35.471 0.5 30.23 ? C2 TAC 301 A 1 HETATM 6 C C2 TAC . B . B 2 20.234 34.078 35.492 0.5 48.53 ? C2 TAC 301 A 1 HETATM 7 C C21 TAC . A . B 2 18.13 32.715 35.078 0.5 29.84 ? C21 TAC 301 A 1 HETATM 8 C C21 TAC . B . B 2 18.979 33.585 34.91 0.5 50.43 ? C21 TAC 301 A 1 HETATM 9 O O21 TAC . A . B 2 17.653 31.818 35.773 0.5 28.51 ? O21 TAC 301 A 1 HETATM 10 O O21 TAC . B . B 2 18.591 32.449 35.167 0.5 54.18 ? O21 TAC 301 A 1 HETATM 11 N N21 TAC . A . B 2 17.548 33.099 33.941 0.5 29.43 ? N21 TAC 301 A 1 HETATM 12 N N21 TAC . B . B 2 18.272 34.378 34.098 0.5 52.35 ? N21 TAC 301 A 1 HETATM 13 C C3 TAC . A . B 2 20.101 32.989 36.599 0.5 30.58 ? C3 TAC 301 A 1 HETATM 14 C C3 TAC . B . B 2 20.629 33.71 36.725 0.5 46.39 ? C3 TAC 301 A 1 HETATM 15 O O3 TAC . A . B 2 20.09 31.749 37.051 0.5 30.25 ? O3 TAC 301 A 1 HETATM 16 O O3 TAC . B . B 2 20.17 32.566 37.234 0.5 43.77 ? O3 TAC 301 A 1 HETATM 17 C C4 TAC . A . B 2 20.987 33.905 37.412 0.5 30.56 ? C4 TAC 301 A 1 HETATM 18 C C4 TAC . B . B 2 21.585 34.539 37.553 0.5 45.05 ? C4 TAC 301 A 1 HETATM 19 N N4 TAC . A . B 2 22.084 33.084 38.066 0.5 31.54 ? N4 TAC 301 A 1 HETATM 20 N N4 TAC . B . B 2 22.361 33.535 38.334 0.5 47.79 ? N4 TAC 301 A 1 HETATM 21 C C42 TAC . A . B 2 22.684 33.859 39.2 0.5 31.39 ? C42 TAC 301 A 1 HETATM 22 C C42 TAC . B . B 2 23.208 34.151 39.373 0.5 45.98 ? C42 TAC 301 A 1 HETATM 23 C C43 TAC . A . B 2 23.216 32.67 37.196 0.5 30.39 ? C43 TAC 301 A 1 HETATM 24 C C43 TAC . B . B 2 23.203 32.688 37.463 0.5 45.27 ? C43 TAC 301 A 1 HETATM 25 C C41 TAC . A . B 2 21.398 35.088 36.526 0.5 31.45 ? C41 TAC 301 A 1 HETATM 26 C C41 TAC . B . B 2 22.506 35.485 36.738 0.5 44.09 ? C41 TAC 301 A 1 HETATM 27 C C5 TAC . A . B 2 20.457 36.283 36.7 0.5 31.99 ? C5 TAC 301 A 1 HETATM 28 C C5 TAC . B . B 2 22.164 36.976 36.833 0.5 42.52 ? C5 TAC 301 A 1 HETATM 29 C C51 TAC . A . B 2 21.081 37.515 36.086 0.5 32.94 ? C51 TAC 301 A 1 HETATM 30 C C51 TAC . B . B 2 23.343 37.849 36.409 0.5 42.05 ? C51 TAC 301 A 1 HETATM 31 C C6 TAC . A . B 2 20.069 38.662 36.056 0.5 34.92 ? C6 TAC 301 A 1 HETATM 32 C C6 TAC . B . B 2 23.066 39.373 36.407 0.5 41.67 ? C6 TAC 301 A 1 HETATM 33 C C62 TAC . A . B 2 19.548 39.1 37.431 0.5 35.38 ? C62 TAC 301 A 1 HETATM 34 C C62 TAC . B . B 2 22.823 39.948 37.778 0.5 41.82 ? C62 TAC 301 A 1 HETATM 35 O O6 TAC . A . B 2 18.887 38.209 35.339 0.5 35.16 ? O6 TAC 301 A 1 HETATM 36 O O6 TAC . B . B 2 21.937 39.655 35.515 0.5 38.94 ? O6 TAC 301 A 1 HETATM 37 C C61 TAC . A . B 2 20.672 39.836 35.337 0.5 35.6 ? C61 TAC 301 A 1 HETATM 38 C C61 TAC . B . B 2 24.248 40.139 35.887 0.5 40.97 ? C61 TAC 301 A 1 HETATM 39 C C7 TAC . A . B 2 20.302 41.131 35.678 0.5 36.67 ? C7 TAC 301 A 1 HETATM 40 C C7 TAC . B . B 2 24.712 41.291 36.453 0.5 39.9 ? C7 TAC 301 A 1 HETATM 41 C C8 TAC . A . B 2 20.818 42.215 34.992 0.5 37.14 ? C8 TAC 301 A 1 HETATM 42 C C8 TAC . B . B 2 25.81 41.95 35.922 0.5 40.58 ? C8 TAC 301 A 1 HETATM 43 C C9 TAC . A . B 2 21.721 42.058 33.958 0.5 37.08 ? C9 TAC 301 A 1 HETATM 44 C C9 TAC . B . B 2 26.488 41.548 34.773 0.5 40.24 ? C9 TAC 301 A 1 HETATM 45 C C10 TAC . A . B 2 22.144 40.81 33.529 0.5 36.41 ? C10 TAC 301 A 1 HETATM 46 C C10 TAC . B . B 2 26.076 40.4 34.132 0.5 41.1 ? C10 TAC 301 A 1 HETATM 47 O O10 TAC . A . B 2 23.043 40.684 32.508 0.5 35.88 ? O10 TAC 301 A 1 HETATM 48 O O10 TAC . B . B 2 26.772 39.979 33.04 0.5 38.51 ? O10 TAC 301 A 1 HETATM 49 C C1A TAC . A . B 2 21.607 39.636 34.226 0.5 34.1 ? C1A TAC 301 A 1 HETATM 50 C C1A TAC . B . B 2 24.932 39.647 34.715 0.5 40.53 ? C1A TAC 301 A 1 HETATM 51 C C11 TAC . A . B 2 22.022 38.254 33.853 0.5 33.68 ? C11 TAC 301 A 1 HETATM 52 C C11 TAC . B . B 2 24.343 38.401 34.158 0.5 43.81 ? C11 TAC 301 A 1 HETATM 53 O O11 TAC . A . B 2 22.717 38.038 32.9 0.5 31.68 ? O11 TAC 301 A 1 HETATM 54 O O11 TAC . B . B 2 24.435 38.241 32.966 0.5 45.77 ? O11 TAC 301 A 1 HETATM 55 C C1B TAC . A . B 2 21.637 37.172 34.717 0.5 31.63 ? C1B TAC 301 A 1 HETATM 56 C C1B TAC . B . B 2 23.653 37.433 35.008 0.5 42.03 ? C1B TAC 301 A 1 HETATM 57 C C12 TAC . A . B 2 21.906 35.919 34.287 0.5 32.22 ? C12 TAC 301 A 1 HETATM 58 C C12 TAC . B . B 2 23.241 36.235 34.507 0.5 45 ? C12 TAC 301 A 1 HETATM 59 O O12 TAC . A . B 2 22.668 35.691 33.191 0.5 31.57 ? O12 TAC 301 A 1 HETATM 60 O O12 TAC . B . B 2 23.419 35.925 33.234 0.5 46.29 ? O12 TAC 301 A 1 HETATM 61 C C1C TAC . A . B 2 21.386 34.735 35.029 0.5 30.9 ? C1C TAC 301 A 1 HETATM 62 C C1C TAC . B . B 2 22.516 35.142 35.257 0.5 45.06 ? C1C TAC 301 A 1 HETATM 63 O O1C TAC . A . B 2 22.172 33.564 34.767 0.5 31.37 ? O1C TAC 301 A 1 HETATM 64 O O1C TAC . B . B 2 23.157 33.879 35.086 0.5 44.96 ? O1C TAC 301 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 64 #