data_6FQD # _model_server_result.job_id 8gxS_lG1LIUz6AZuUBroqw _model_server_result.datetime_utc '2024-11-15 10:01:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6FQD # _exptl.entry_id 6FQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FQD _cell.length_a 110.963 _cell.length_b 110.963 _cell.length_c 110.632 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall 'I 4' _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 236 A LEU 448 1_555 C K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc2 A O GLY 238 A GLY 450 1_555 C K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc3 A O ALA 240 A ALA 452 1_555 C K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc4 C K K . A K 501 1_555 G O HOH . A HOH 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc5 C K K . A K 501 1_555 G O HOH . A HOH 736 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc6 B O LEU 236 B LEU 448 1_555 E K K . B K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc7 B O GLY 238 B GLY 450 1_555 E K K . B K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc8 B O ALA 240 B ALA 452 1_555 E K K . B K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc9 E K K . B K 501 1_555 H O HOH . B HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 70 n n PB O2B GDP sing 71 n n PB O3B GDP sing 72 n n PB O3A GDP sing 73 n n O2B HOB2 GDP sing 74 n n O3B HOB3 GDP sing 75 n n O3A PA GDP sing 76 n n PA O1A GDP doub 77 n n PA O2A GDP sing 78 n n PA O5' GDP sing 79 n n O2A HOA2 GDP sing 80 n n O5' C5' GDP sing 81 n n C5' C4' GDP sing 82 n n C5' H5' GDP sing 83 n n C5' "H5''" GDP sing 84 n n C4' O4' GDP sing 85 n n C4' C3' GDP sing 86 n n C4' H4' GDP sing 87 n n O4' C1' GDP sing 88 n n C3' O3' GDP sing 89 n n C3' C2' GDP sing 90 n n C3' H3' GDP sing 91 n n O3' HO3' GDP sing 92 n n C2' O2' GDP sing 93 n n C2' C1' GDP sing 94 n n C2' H2' GDP sing 95 n n O2' HO2' GDP sing 96 n n C1' N9 GDP sing 97 n n C1' H1' GDP sing 98 n n N9 C8 GDP sing 99 n y N9 C4 GDP sing 100 n y C8 N7 GDP doub 101 n y C8 H8 GDP sing 102 n n N7 C5 GDP sing 103 n y C5 C6 GDP sing 104 n n C5 C4 GDP doub 105 n y C6 O6 GDP doub 106 n n C6 N1 GDP sing 107 n n N1 C2 GDP sing 108 n n N1 HN1 GDP sing 109 n n C2 N2 GDP sing 110 n n C2 N3 GDP doub 111 n n N2 HN21 GDP sing 112 n n N2 HN22 GDP sing 113 n n N3 C4 GDP sing 114 n n # _atom_sites.entry_id 6FQD _atom_sites.fract_transf_matrix[1][1] 0.009012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 501 1 K K . D 3 GDP A 1 502 2 GDP GDP . E 2 K B 1 501 2 K K . F 3 GDP B 1 502 1 GDP GDP . G 4 HOH A 1 601 308 HOH HOH . G 4 HOH A 2 602 317 HOH HOH . G 4 HOH A 3 603 215 HOH HOH . G 4 HOH A 4 604 220 HOH HOH . G 4 HOH A 5 605 307 HOH HOH . G 4 HOH A 6 606 235 HOH HOH . G 4 HOH A 7 607 249 HOH HOH . G 4 HOH A 8 608 284 HOH HOH . G 4 HOH A 9 609 163 HOH HOH . G 4 HOH A 10 610 227 HOH HOH . G 4 HOH A 11 611 154 HOH HOH . G 4 HOH A 12 612 38 HOH HOH . G 4 HOH A 13 613 225 HOH HOH . G 4 HOH A 14 614 77 HOH HOH . G 4 HOH A 15 615 207 HOH HOH . G 4 HOH A 16 616 30 HOH HOH . G 4 HOH A 17 617 296 HOH HOH . G 4 HOH A 18 618 302 HOH HOH . G 4 HOH A 19 619 109 HOH HOH . G 4 HOH A 20 620 267 HOH HOH . G 4 HOH A 21 621 93 HOH HOH . G 4 HOH A 22 622 42 HOH HOH . G 4 HOH A 23 623 7 HOH HOH . G 4 HOH A 24 624 64 HOH HOH . G 4 HOH A 25 625 192 HOH HOH . G 4 HOH A 26 626 319 HOH HOH . G 4 HOH A 27 627 2 HOH HOH . G 4 HOH A 28 628 325 HOH HOH . G 4 HOH A 29 629 168 HOH HOH . G 4 HOH A 30 630 11 HOH HOH . G 4 HOH A 31 631 104 HOH HOH . G 4 HOH A 32 632 37 HOH HOH . G 4 HOH A 33 633 48 HOH HOH . G 4 HOH A 34 634 3 HOH HOH . G 4 HOH A 35 635 24 HOH HOH . G 4 HOH A 36 636 85 HOH HOH . G 4 HOH A 37 637 53 HOH HOH . G 4 HOH A 38 638 117 HOH HOH . G 4 HOH A 39 639 61 HOH HOH . G 4 HOH A 40 640 198 HOH HOH . G 4 HOH A 41 641 103 HOH HOH . G 4 HOH A 42 642 287 HOH HOH . G 4 HOH A 43 643 180 HOH HOH . G 4 HOH A 44 644 67 HOH HOH . G 4 HOH A 45 645 112 HOH HOH . G 4 HOH A 46 646 15 HOH HOH . G 4 HOH A 47 647 40 HOH HOH . G 4 HOH A 48 648 73 HOH HOH . G 4 HOH A 49 649 31 HOH HOH . G 4 HOH A 50 650 69 HOH HOH . G 4 HOH A 51 651 101 HOH HOH . G 4 HOH A 52 652 13 HOH HOH . G 4 HOH A 53 653 36 HOH HOH . G 4 HOH A 54 654 218 HOH HOH . G 4 HOH A 55 655 19 HOH HOH . G 4 HOH A 56 656 253 HOH HOH . G 4 HOH A 57 657 107 HOH HOH . G 4 HOH A 58 658 65 HOH HOH . G 4 HOH A 59 659 173 HOH HOH . G 4 HOH A 60 660 1 HOH HOH . G 4 HOH A 61 661 237 HOH HOH . G 4 HOH A 62 662 54 HOH HOH . G 4 HOH A 63 663 45 HOH HOH . G 4 HOH A 64 664 55 HOH HOH . G 4 HOH A 65 665 293 HOH HOH . G 4 HOH A 66 666 14 HOH HOH . G 4 HOH A 67 667 49 HOH HOH . G 4 HOH A 68 668 153 HOH HOH . G 4 HOH A 69 669 323 HOH HOH . G 4 HOH A 70 670 161 HOH HOH . G 4 HOH A 71 671 255 HOH HOH . G 4 HOH A 72 672 43 HOH HOH . G 4 HOH A 73 673 122 HOH HOH . G 4 HOH A 74 674 8 HOH HOH . G 4 HOH A 75 675 119 HOH HOH . G 4 HOH A 76 676 4 HOH HOH . G 4 HOH A 77 677 118 HOH HOH . G 4 HOH A 78 678 327 HOH HOH . G 4 HOH A 79 679 95 HOH HOH . G 4 HOH A 80 680 210 HOH HOH . G 4 HOH A 81 681 105 HOH HOH . G 4 HOH A 82 682 145 HOH HOH . G 4 HOH A 83 683 78 HOH HOH . G 4 HOH A 84 684 90 HOH HOH . G 4 HOH A 85 685 212 HOH HOH . G 4 HOH A 86 686 28 HOH HOH . G 4 HOH A 87 687 196 HOH HOH . G 4 HOH A 88 688 270 HOH HOH . G 4 HOH A 89 689 143 HOH HOH . G 4 HOH A 90 690 113 HOH HOH . G 4 HOH A 91 691 159 HOH HOH . G 4 HOH A 92 692 51 HOH HOH . G 4 HOH A 93 693 190 HOH HOH . G 4 HOH A 94 694 189 HOH HOH . G 4 HOH A 95 695 181 HOH HOH . G 4 HOH A 96 696 164 HOH HOH . G 4 HOH A 97 697 47 HOH HOH . G 4 HOH A 98 698 46 HOH HOH . G 4 HOH A 99 699 100 HOH HOH . G 4 HOH A 100 700 186 HOH HOH . G 4 HOH A 101 701 124 HOH HOH . G 4 HOH A 102 702 72 HOH HOH . G 4 HOH A 103 703 175 HOH HOH . G 4 HOH A 104 704 160 HOH HOH . G 4 HOH A 105 705 88 HOH HOH . G 4 HOH A 106 706 68 HOH HOH . G 4 HOH A 107 707 292 HOH HOH . G 4 HOH A 108 708 178 HOH HOH . G 4 HOH A 109 709 166 HOH HOH . G 4 HOH A 110 710 259 HOH HOH . G 4 HOH A 111 711 86 HOH HOH . G 4 HOH A 112 712 184 HOH HOH . G 4 HOH A 113 713 16 HOH HOH . G 4 HOH A 114 714 179 HOH HOH . G 4 HOH A 115 715 114 HOH HOH . G 4 HOH A 116 716 57 HOH HOH . G 4 HOH A 117 717 110 HOH HOH . G 4 HOH A 118 718 52 HOH HOH . G 4 HOH A 119 719 138 HOH HOH . G 4 HOH A 120 720 63 HOH HOH . G 4 HOH A 121 721 313 HOH HOH . G 4 HOH A 122 722 191 HOH HOH . G 4 HOH A 123 723 169 HOH HOH . G 4 HOH A 124 724 75 HOH HOH . G 4 HOH A 125 725 108 HOH HOH . G 4 HOH A 126 726 205 HOH HOH . G 4 HOH A 127 727 172 HOH HOH . G 4 HOH A 128 728 94 HOH HOH . G 4 HOH A 129 729 74 HOH HOH . G 4 HOH A 130 730 195 HOH HOH . G 4 HOH A 131 731 251 HOH HOH . G 4 HOH A 132 732 131 HOH HOH . G 4 HOH A 133 733 252 HOH HOH . G 4 HOH A 134 734 148 HOH HOH . G 4 HOH A 135 735 232 HOH HOH . G 4 HOH A 136 736 98 HOH HOH . G 4 HOH A 137 737 286 HOH HOH . G 4 HOH A 138 738 305 HOH HOH . G 4 HOH A 139 739 228 HOH HOH . G 4 HOH A 140 740 170 HOH HOH . G 4 HOH A 141 741 318 HOH HOH . G 4 HOH A 142 742 274 HOH HOH . G 4 HOH A 143 743 242 HOH HOH . G 4 HOH A 144 744 89 HOH HOH . G 4 HOH A 145 745 233 HOH HOH . G 4 HOH A 146 746 182 HOH HOH . G 4 HOH A 147 747 135 HOH HOH . G 4 HOH A 148 748 314 HOH HOH . G 4 HOH A 149 749 299 HOH HOH . G 4 HOH A 150 750 283 HOH HOH . G 4 HOH A 151 751 29 HOH HOH . G 4 HOH A 152 752 194 HOH HOH . G 4 HOH A 153 753 261 HOH HOH . G 4 HOH A 154 754 263 HOH HOH . G 4 HOH A 155 755 106 HOH HOH . G 4 HOH A 156 756 276 HOH HOH . G 4 HOH A 157 757 246 HOH HOH . G 4 HOH A 158 758 206 HOH HOH . G 4 HOH A 159 759 157 HOH HOH . G 4 HOH A 160 760 268 HOH HOH . G 4 HOH A 161 761 152 HOH HOH . G 4 HOH A 162 762 315 HOH HOH . G 4 HOH A 163 763 129 HOH HOH . G 4 HOH A 164 764 188 HOH HOH . G 4 HOH A 165 765 300 HOH HOH . G 4 HOH A 166 766 171 HOH HOH . G 4 HOH A 167 767 243 HOH HOH . G 4 HOH A 168 768 273 HOH HOH . G 4 HOH A 169 769 236 HOH HOH . G 4 HOH A 170 770 272 HOH HOH . H 4 HOH B 1 601 326 HOH HOH . H 4 HOH B 2 602 298 HOH HOH . H 4 HOH B 3 603 87 HOH HOH . H 4 HOH B 4 604 301 HOH HOH . H 4 HOH B 5 605 223 HOH HOH . H 4 HOH B 6 606 238 HOH HOH . H 4 HOH B 7 607 213 HOH HOH . H 4 HOH B 8 608 257 HOH HOH . H 4 HOH B 9 609 245 HOH HOH . H 4 HOH B 10 610 269 HOH HOH . H 4 HOH B 11 611 258 HOH HOH . H 4 HOH B 12 612 306 HOH HOH . H 4 HOH B 13 613 271 HOH HOH . H 4 HOH B 14 614 291 HOH HOH . H 4 HOH B 15 615 289 HOH HOH . H 4 HOH B 16 616 324 HOH HOH . H 4 HOH B 17 617 250 HOH HOH . H 4 HOH B 18 618 82 HOH HOH . H 4 HOH B 19 619 265 HOH HOH . H 4 HOH B 20 620 18 HOH HOH . H 4 HOH B 21 621 27 HOH HOH . H 4 HOH B 22 622 44 HOH HOH . H 4 HOH B 23 623 59 HOH HOH . H 4 HOH B 24 624 281 HOH HOH . H 4 HOH B 25 625 6 HOH HOH . H 4 HOH B 26 626 185 HOH HOH . H 4 HOH B 27 627 275 HOH HOH . H 4 HOH B 28 628 60 HOH HOH . H 4 HOH B 29 629 224 HOH HOH . H 4 HOH B 30 630 35 HOH HOH . H 4 HOH B 31 631 34 HOH HOH . H 4 HOH B 32 632 121 HOH HOH . H 4 HOH B 33 633 177 HOH HOH . H 4 HOH B 34 634 216 HOH HOH . H 4 HOH B 35 635 142 HOH HOH . H 4 HOH B 36 636 22 HOH HOH . H 4 HOH B 37 637 62 HOH HOH . H 4 HOH B 38 638 50 HOH HOH . H 4 HOH B 39 639 33 HOH HOH . H 4 HOH B 40 640 5 HOH HOH . H 4 HOH B 41 641 80 HOH HOH . H 4 HOH B 42 642 140 HOH HOH . H 4 HOH B 43 643 116 HOH HOH . H 4 HOH B 44 644 26 HOH HOH . H 4 HOH B 45 645 21 HOH HOH . H 4 HOH B 46 646 200 HOH HOH . H 4 HOH B 47 647 239 HOH HOH . H 4 HOH B 48 648 76 HOH HOH . H 4 HOH B 49 649 204 HOH HOH . H 4 HOH B 50 650 84 HOH HOH . H 4 HOH B 51 651 146 HOH HOH . H 4 HOH B 52 652 79 HOH HOH . H 4 HOH B 53 653 17 HOH HOH . H 4 HOH B 54 654 9 HOH HOH . H 4 HOH B 55 655 214 HOH HOH . H 4 HOH B 56 656 144 HOH HOH . H 4 HOH B 57 657 310 HOH HOH . H 4 HOH B 58 658 12 HOH HOH . H 4 HOH B 59 659 303 HOH HOH . H 4 HOH B 60 660 123 HOH HOH . H 4 HOH B 61 661 167 HOH HOH . H 4 HOH B 62 662 260 HOH HOH . H 4 HOH B 63 663 199 HOH HOH . H 4 HOH B 64 664 137 HOH HOH . H 4 HOH B 65 665 183 HOH HOH . H 4 HOH B 66 666 20 HOH HOH . H 4 HOH B 67 667 130 HOH HOH . H 4 HOH B 68 668 99 HOH HOH . H 4 HOH B 69 669 96 HOH HOH . H 4 HOH B 70 670 56 HOH HOH . H 4 HOH B 71 671 71 HOH HOH . H 4 HOH B 72 672 176 HOH HOH . H 4 HOH B 73 673 193 HOH HOH . H 4 HOH B 74 674 156 HOH HOH . H 4 HOH B 75 675 221 HOH HOH . H 4 HOH B 76 676 133 HOH HOH . H 4 HOH B 77 677 83 HOH HOH . H 4 HOH B 78 678 126 HOH HOH . H 4 HOH B 79 679 320 HOH HOH . H 4 HOH B 80 680 285 HOH HOH . H 4 HOH B 81 681 136 HOH HOH . H 4 HOH B 82 682 277 HOH HOH . H 4 HOH B 83 683 23 HOH HOH . H 4 HOH B 84 684 92 HOH HOH . H 4 HOH B 85 685 187 HOH HOH . H 4 HOH B 86 686 58 HOH HOH . H 4 HOH B 87 687 201 HOH HOH . H 4 HOH B 88 688 10 HOH HOH . H 4 HOH B 89 689 91 HOH HOH . H 4 HOH B 90 690 219 HOH HOH . H 4 HOH B 91 691 217 HOH HOH . H 4 HOH B 92 692 41 HOH HOH . H 4 HOH B 93 693 158 HOH HOH . H 4 HOH B 94 694 97 HOH HOH . H 4 HOH B 95 695 141 HOH HOH . H 4 HOH B 96 696 211 HOH HOH . H 4 HOH B 97 697 120 HOH HOH . H 4 HOH B 98 698 222 HOH HOH . H 4 HOH B 99 699 70 HOH HOH . H 4 HOH B 100 700 125 HOH HOH . H 4 HOH B 101 701 264 HOH HOH . H 4 HOH B 102 702 66 HOH HOH . H 4 HOH B 103 703 230 HOH HOH . H 4 HOH B 104 704 208 HOH HOH . H 4 HOH B 105 705 115 HOH HOH . H 4 HOH B 106 706 25 HOH HOH . H 4 HOH B 107 707 111 HOH HOH . H 4 HOH B 108 708 139 HOH HOH . H 4 HOH B 109 709 132 HOH HOH . H 4 HOH B 110 710 290 HOH HOH . H 4 HOH B 111 711 248 HOH HOH . H 4 HOH B 112 712 295 HOH HOH . H 4 HOH B 113 713 32 HOH HOH . H 4 HOH B 114 714 304 HOH HOH . H 4 HOH B 115 715 155 HOH HOH . H 4 HOH B 116 716 241 HOH HOH . H 4 HOH B 117 717 278 HOH HOH . H 4 HOH B 118 718 202 HOH HOH . H 4 HOH B 119 719 165 HOH HOH . H 4 HOH B 120 720 197 HOH HOH . H 4 HOH B 121 721 39 HOH HOH . H 4 HOH B 122 722 247 HOH HOH . H 4 HOH B 123 723 297 HOH HOH . H 4 HOH B 124 724 203 HOH HOH . H 4 HOH B 125 725 151 HOH HOH . H 4 HOH B 126 726 128 HOH HOH . H 4 HOH B 127 727 240 HOH HOH . H 4 HOH B 128 728 147 HOH HOH . H 4 HOH B 129 729 254 HOH HOH . H 4 HOH B 130 730 209 HOH HOH . H 4 HOH B 131 731 262 HOH HOH . H 4 HOH B 132 732 244 HOH HOH . H 4 HOH B 133 733 322 HOH HOH . H 4 HOH B 134 734 226 HOH HOH . H 4 HOH B 135 735 102 HOH HOH . H 4 HOH B 136 736 311 HOH HOH . H 4 HOH B 137 737 150 HOH HOH . H 4 HOH B 138 738 134 HOH HOH . H 4 HOH B 139 739 309 HOH HOH . H 4 HOH B 140 740 256 HOH HOH . H 4 HOH B 141 741 127 HOH HOH . H 4 HOH B 142 742 149 HOH HOH . H 4 HOH B 143 743 81 HOH HOH . H 4 HOH B 144 744 162 HOH HOH . H 4 HOH B 145 745 234 HOH HOH . H 4 HOH B 146 746 174 HOH HOH . H 4 HOH B 147 747 312 HOH HOH . H 4 HOH B 148 748 279 HOH HOH . H 4 HOH B 149 749 294 HOH HOH . H 4 HOH B 150 750 316 HOH HOH . H 4 HOH B 151 751 231 HOH HOH . H 4 HOH B 152 752 321 HOH HOH . H 4 HOH B 153 753 266 HOH HOH . H 4 HOH B 154 754 229 HOH HOH . H 4 HOH B 155 755 282 HOH HOH . H 4 HOH B 156 756 280 HOH HOH . H 4 HOH B 157 757 288 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . F 3 19.867 8.253 15.366 1 26.54 ? PB GDP 502 B 1 HETATM 2 O O1B GDP . . . F 3 19.287 9.139 14.333 1 27.43 ? O1B GDP 502 B 1 HETATM 3 O O2B GDP . . . F 3 21.377 8.216 15.28 1 28.18 ? O2B GDP 502 B 1 HETATM 4 O O3B GDP . . . F 3 19.402 8.637 16.763 1 20.46 ? O3B GDP 502 B 1 HETATM 5 O O3A GDP . . . F 3 19.38 6.754 14.997 1 30.12 ? O3A GDP 502 B 1 HETATM 6 P PA GDP . . . F 3 18.482 5.756 15.957 1 26.96 ? PA GDP 502 B 1 HETATM 7 O O1A GDP . . . F 3 17.031 6.223 15.941 1 30.43 ? O1A GDP 502 B 1 HETATM 8 O O2A GDP . . . F 3 18.991 5.58 17.39 1 28.26 ? O2A GDP 502 B 1 HETATM 9 O O5' GDP . . . F 3 18.715 4.386 15.034 1 29.48 ? O5' GDP 502 B 1 HETATM 10 C C5' GDP . . . F 3 17.544 3.619 15.137 1 45.28 ? C5' GDP 502 B 1 HETATM 11 C C4' GDP . . . F 3 17.532 2.623 14.039 1 41.17 ? C4' GDP 502 B 1 HETATM 12 O O4' GDP . . . F 3 18.988 1.94 13.827 1 32.91 ? O4' GDP 502 B 1 HETATM 13 C C3' GDP . . . F 3 16.698 1.737 14.494 1 36.25 ? C3' GDP 502 B 1 HETATM 14 O O3' GDP . . . F 3 15.964 1.072 13.391 1 34.87 ? O3' GDP 502 B 1 HETATM 15 C C2' GDP . . . F 3 17.618 0.783 15.264 1 36.29 ? C2' GDP 502 B 1 HETATM 16 O O2' GDP . . . F 3 17.021 -0.4 15.229 1 49.18 ? O2' GDP 502 B 1 HETATM 17 C C1' GDP . . . F 3 18.944 0.791 14.442 1 31.24 ? C1' GDP 502 B 1 HETATM 18 N N9 GDP . . . F 3 20.145 0.621 15.31 1 30.4 ? N9 GDP 502 B 1 HETATM 19 C C8 GDP . . . F 3 20.867 1.32 16.233 1 30.4 ? C8 GDP 502 B 1 HETATM 20 N N7 GDP . . . F 3 21.899 0.541 16.626 1 27.22 ? N7 GDP 502 B 1 HETATM 21 C C5 GDP . . . F 3 21.822 -0.631 15.961 1 28.86 ? C5 GDP 502 B 1 HETATM 22 C C6 GDP . . . F 3 22.694 -1.892 15.981 1 29.09 ? C6 GDP 502 B 1 HETATM 23 O O6 GDP . . . F 3 23.673 -1.958 16.711 1 27.77 ? O6 GDP 502 B 1 HETATM 24 N N1 GDP . . . F 3 22.354 -3.018 15.135 1 30.13 ? N1 GDP 502 B 1 HETATM 25 C C2 GDP . . . F 3 21.194 -2.943 14.27 1 22.56 ? C2 GDP 502 B 1 HETATM 26 N N2 GDP . . . F 3 20.809 -4.068 13.38 1 29.35 ? N2 GDP 502 B 1 HETATM 27 N N3 GDP . . . F 3 20.376 -1.732 14.264 1 26.93 ? N3 GDP 502 B 1 HETATM 28 C C4 GDP . . . F 3 20.723 -0.573 15.133 1 31.43 ? C4 GDP 502 B 1 HETATM 29 H H5' GDP . . . F 3 17.532 3.16 15.991 1 54.29 ? H5' GDP 502 B 1 HETATM 30 H "H5''" GDP . . . F 3 16.768 4.196 15.063 1 54.29 ? "H5''" GDP 502 B 1 HETATM 31 H H4' GDP . . . F 3 17.206 3.014 13.213 1 49.36 ? H4' GDP 502 B 1 HETATM 32 H H3' GDP . . . F 3 16.075 2.158 15.107 1 43.45 ? H3' GDP 502 B 1 HETATM 33 H HO3' GDP . . . F 3 15.159 0.937 13.628 1 41.8 ? HO3' GDP 502 B 1 HETATM 34 H H2' GDP . . . F 3 17.762 1.089 16.173 1 43.5 ? H2' GDP 502 B 1 HETATM 35 H HO2' GDP . . . F 3 16.565 -0.467 14.515 1 58.97 ? HO2' GDP 502 B 1 HETATM 36 H H1' GDP . . . F 3 18.915 0.079 13.784 1 37.45 ? H1' GDP 502 B 1 HETATM 37 H H8 GDP . . . F 3 20.685 2.181 16.535 1 36.43 ? H8 GDP 502 B 1 HETATM 38 H HN1 GDP . . . F 3 22.84 -3.727 15.144 1 36.1 ? HN1 GDP 502 B 1 HETATM 39 H HN21 GDP . . . F 3 20.115 -3.998 12.877 1 35.17 ? HN21 GDP 502 B 1 HETATM 40 H HN22 GDP . . . F 3 21.276 -4.79 13.37 1 35.17 ? HN22 GDP 502 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #