data_6FQN # _model_server_result.job_id Dp58avxls6mf86gEBSZbsA _model_server_result.datetime_utc '2024-11-24 01:26:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6FQN # _exptl.entry_id 6FQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FQN _cell.length_a 113.43 _cell.length_b 113.43 _cell.length_c 137.57 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 45.856667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 67 1_555 A SG CYS 91 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 251 A CYS 254 1_555 A SG CYS 262 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 399 A CYS 402 1_555 A SG CYS 518 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 56 A ASN 59 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A C GLU 196 A GLU 199 1_555 A N BXT 197 A BXT 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C BXT 197 A BXT 200 1_555 A N ALA 198 A ALA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A ND2 ASN 413 A ASN 416 1_555 D C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 A ND2 ASN 454 A ASN 457 1_555 E C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6FQN _atom_sites.fract_transf_matrix[1][1] 0.008816 _atom_sites.fract_transf_matrix[1][2] 0.00509 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E2W A 1 601 550 E2W JDS . C 3 NAG A 1 602 560 NAG NAG . D 3 NAG A 1 603 561 NAG NAG . E 3 NAG A 1 604 562 NAG NAG . F 4 EDO A 1 605 1 EDO EDO . G 5 CL A 1 606 3 CL CL . H 5 CL A 1 607 4 CL CL . I 5 CL A 1 608 2 CL CL . J 5 CL A 1 609 3 CL CL . K 5 CL A 1 610 4 CL CL . L 5 CL A 1 611 5 CL CL . M 6 P6G A 1 612 1 P6G PG6 . N 4 EDO A 1 613 1 EDO EDO . O 7 HOH A 1 701 121 HOH HOH . O 7 HOH A 2 702 68 HOH HOH . O 7 HOH A 3 703 33 HOH HOH . O 7 HOH A 4 704 31 HOH HOH . O 7 HOH A 5 705 172 HOH HOH . O 7 HOH A 6 706 116 HOH HOH . O 7 HOH A 7 707 88 HOH HOH . O 7 HOH A 8 708 19 HOH HOH . O 7 HOH A 9 709 43 HOH HOH . O 7 HOH A 10 710 39 HOH HOH . O 7 HOH A 11 711 82 HOH HOH . O 7 HOH A 12 712 78 HOH HOH . O 7 HOH A 13 713 122 HOH HOH . O 7 HOH A 14 714 93 HOH HOH . O 7 HOH A 15 715 107 HOH HOH . O 7 HOH A 16 716 3 HOH HOH . O 7 HOH A 17 717 164 HOH HOH . O 7 HOH A 18 718 26 HOH HOH . O 7 HOH A 19 719 179 HOH HOH . O 7 HOH A 20 720 193 HOH HOH . O 7 HOH A 21 721 133 HOH HOH . O 7 HOH A 22 722 14 HOH HOH . O 7 HOH A 23 723 158 HOH HOH . O 7 HOH A 24 724 176 HOH HOH . O 7 HOH A 25 725 47 HOH HOH . O 7 HOH A 26 726 23 HOH HOH . O 7 HOH A 27 727 52 HOH HOH . O 7 HOH A 28 728 99 HOH HOH . O 7 HOH A 29 729 34 HOH HOH . O 7 HOH A 30 730 181 HOH HOH . O 7 HOH A 31 731 128 HOH HOH . O 7 HOH A 32 732 25 HOH HOH . O 7 HOH A 33 733 127 HOH HOH . O 7 HOH A 34 734 62 HOH HOH . O 7 HOH A 35 735 163 HOH HOH . O 7 HOH A 36 736 56 HOH HOH . O 7 HOH A 37 737 15 HOH HOH . O 7 HOH A 38 738 75 HOH HOH . O 7 HOH A 39 739 65 HOH HOH . O 7 HOH A 40 740 5 HOH HOH . O 7 HOH A 41 741 187 HOH HOH . O 7 HOH A 42 742 100 HOH HOH . O 7 HOH A 43 743 87 HOH HOH . O 7 HOH A 44 744 108 HOH HOH . O 7 HOH A 45 745 46 HOH HOH . O 7 HOH A 46 746 104 HOH HOH . O 7 HOH A 47 747 16 HOH HOH . O 7 HOH A 48 748 40 HOH HOH . O 7 HOH A 49 749 186 HOH HOH . O 7 HOH A 50 750 48 HOH HOH . O 7 HOH A 51 751 143 HOH HOH . O 7 HOH A 52 752 105 HOH HOH . O 7 HOH A 53 753 89 HOH HOH . O 7 HOH A 54 754 8 HOH HOH . O 7 HOH A 55 755 81 HOH HOH . O 7 HOH A 56 756 72 HOH HOH . O 7 HOH A 57 757 11 HOH HOH . O 7 HOH A 58 758 120 HOH HOH . O 7 HOH A 59 759 184 HOH HOH . O 7 HOH A 60 760 22 HOH HOH . O 7 HOH A 61 761 84 HOH HOH . O 7 HOH A 62 762 50 HOH HOH . O 7 HOH A 63 763 6 HOH HOH . O 7 HOH A 64 764 126 HOH HOH . O 7 HOH A 65 765 177 HOH HOH . O 7 HOH A 66 766 123 HOH HOH . O 7 HOH A 67 767 97 HOH HOH . O 7 HOH A 68 768 111 HOH HOH . O 7 HOH A 69 769 27 HOH HOH . O 7 HOH A 70 770 12 HOH HOH . O 7 HOH A 71 771 9 HOH HOH . O 7 HOH A 72 772 44 HOH HOH . O 7 HOH A 73 773 38 HOH HOH . O 7 HOH A 74 774 201 HOH HOH . O 7 HOH A 75 775 42 HOH HOH . O 7 HOH A 76 776 17 HOH HOH . O 7 HOH A 77 777 117 HOH HOH . O 7 HOH A 78 778 4 HOH HOH . O 7 HOH A 79 779 64 HOH HOH . O 7 HOH A 80 780 95 HOH HOH . O 7 HOH A 81 781 182 HOH HOH . O 7 HOH A 82 782 183 HOH HOH . O 7 HOH A 83 783 142 HOH HOH . O 7 HOH A 84 784 24 HOH HOH . O 7 HOH A 85 785 18 HOH HOH . O 7 HOH A 86 786 57 HOH HOH . O 7 HOH A 87 787 71 HOH HOH . O 7 HOH A 88 788 192 HOH HOH . O 7 HOH A 89 789 199 HOH HOH . O 7 HOH A 90 790 28 HOH HOH . O 7 HOH A 91 791 90 HOH HOH . O 7 HOH A 92 792 35 HOH HOH . O 7 HOH A 93 793 21 HOH HOH . O 7 HOH A 94 794 180 HOH HOH . O 7 HOH A 95 795 191 HOH HOH . O 7 HOH A 96 796 10 HOH HOH . O 7 HOH A 97 797 102 HOH HOH . O 7 HOH A 98 798 153 HOH HOH . O 7 HOH A 99 799 30 HOH HOH . O 7 HOH A 100 800 77 HOH HOH . O 7 HOH A 101 801 113 HOH HOH . O 7 HOH A 102 802 200 HOH HOH . O 7 HOH A 103 803 106 HOH HOH . O 7 HOH A 104 804 168 HOH HOH . O 7 HOH A 105 805 54 HOH HOH . O 7 HOH A 106 806 79 HOH HOH . O 7 HOH A 107 807 98 HOH HOH . O 7 HOH A 108 808 154 HOH HOH . O 7 HOH A 109 809 170 HOH HOH . O 7 HOH A 110 810 51 HOH HOH . O 7 HOH A 111 811 173 HOH HOH . O 7 HOH A 112 812 86 HOH HOH . O 7 HOH A 113 813 115 HOH HOH . O 7 HOH A 114 814 109 HOH HOH . O 7 HOH A 115 815 148 HOH HOH . O 7 HOH A 116 816 32 HOH HOH . O 7 HOH A 117 817 152 HOH HOH . O 7 HOH A 118 818 94 HOH HOH . O 7 HOH A 119 819 60 HOH HOH . O 7 HOH A 120 820 190 HOH HOH . O 7 HOH A 121 821 185 HOH HOH . O 7 HOH A 122 822 63 HOH HOH . O 7 HOH A 123 823 174 HOH HOH . O 7 HOH A 124 824 114 HOH HOH . O 7 HOH A 125 825 202 HOH HOH . O 7 HOH A 126 826 49 HOH HOH . O 7 HOH A 127 827 112 HOH HOH . O 7 HOH A 128 828 83 HOH HOH . O 7 HOH A 129 829 189 HOH HOH . O 7 HOH A 130 830 138 HOH HOH . O 7 HOH A 131 831 29 HOH HOH . O 7 HOH A 132 832 125 HOH HOH . O 7 HOH A 133 833 129 HOH HOH . O 7 HOH A 134 834 196 HOH HOH . O 7 HOH A 135 835 119 HOH HOH . O 7 HOH A 136 836 91 HOH HOH . O 7 HOH A 137 837 194 HOH HOH . O 7 HOH A 138 838 85 HOH HOH . O 7 HOH A 139 839 69 HOH HOH . O 7 HOH A 140 840 195 HOH HOH . O 7 HOH A 141 841 59 HOH HOH . O 7 HOH A 142 842 203 HOH HOH . O 7 HOH A 143 843 137 HOH HOH . O 7 HOH A 144 844 197 HOH HOH . O 7 HOH A 145 845 66 HOH HOH . O 7 HOH A 146 846 80 HOH HOH . O 7 HOH A 147 847 178 HOH HOH . O 7 HOH A 148 848 145 HOH HOH . O 7 HOH A 149 849 141 HOH HOH . O 7 HOH A 150 850 130 HOH HOH . O 7 HOH A 151 851 70 HOH HOH . O 7 HOH A 152 852 135 HOH HOH . O 7 HOH A 153 853 169 HOH HOH . O 7 HOH A 154 854 140 HOH HOH . O 7 HOH A 155 855 146 HOH HOH . O 7 HOH A 156 856 156 HOH HOH . O 7 HOH A 157 857 136 HOH HOH . O 7 HOH A 158 858 134 HOH HOH . O 7 HOH A 159 859 55 HOH HOH . O 7 HOH A 160 860 61 HOH HOH . O 7 HOH A 161 861 118 HOH HOH . O 7 HOH A 162 862 188 HOH HOH . O 7 HOH A 163 863 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 83.028 -26.719 4.726 1 92.1 ? C1 NAG 602 A 1 HETATM 2 C C2 NAG . . . C 3 83.286 -27.265 6.204 1 88.67 ? C2 NAG 602 A 1 HETATM 3 C C3 NAG . . . C 3 84.782 -27.27 6.574 1 95.25 ? C3 NAG 602 A 1 HETATM 4 C C4 NAG . . . C 3 85.619 -27.907 5.481 1 96.52 ? C4 NAG 602 A 1 HETATM 5 C C5 NAG . . . C 3 85.452 -27.062 4.238 1 95.25 ? C5 NAG 602 A 1 HETATM 6 C C6 NAG . . . C 3 86.296 -27.536 3.08 1 87.66 ? C6 NAG 602 A 1 HETATM 7 C C7 NAG . . . C 3 82.556 -26.654 8.52 1 87.92 ? C7 NAG 602 A 1 HETATM 8 C C8 NAG . . . C 3 81.69 -25.722 9.319 1 72.03 ? C8 NAG 602 A 1 HETATM 9 N N2 NAG . . . C 3 82.522 -26.49 7.182 1 91.48 ? N2 NAG 602 A 1 HETATM 10 O O3 NAG . . . C 3 84.992 -27.993 7.785 1 94.23 ? O3 NAG 602 A 1 HETATM 11 O O4 NAG . . . C 3 86.986 -27.961 5.873 1 98.97 ? O4 NAG 602 A 1 HETATM 12 O O5 NAG . . . C 3 84.09 -27.167 3.817 1 93.34 ? O5 NAG 602 A 1 HETATM 13 O O6 NAG . . . C 3 85.585 -27.404 1.857 1 85.68 ? O6 NAG 602 A 1 HETATM 14 O O7 NAG . . . C 3 83.247 -27.515 9.064 1 88.01 ? O7 NAG 602 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #