data_6FQY # _model_server_result.job_id o8LVtLGpadNz1NKWzAhUMQ _model_server_result.datetime_utc '2024-11-17 05:37:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6FQY # _exptl.entry_id 6FQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FQY _cell.length_a 99.32 _cell.length_b 99.32 _cell.length_c 181.75 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 281 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 281 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 281 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 281 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 246 n n PA O2A NAP sing 247 n n PA O5B NAP sing 248 n n PA O3 NAP sing 249 n n O2A HOA2 NAP sing 250 n n O5B C5B NAP sing 251 n n C5B C4B NAP sing 252 n n C5B H51A NAP sing 253 n n C5B H52A NAP sing 254 n n C4B O4B NAP sing 255 n n C4B C3B NAP sing 256 n n C4B H4B NAP sing 257 n n O4B C1B NAP sing 258 n n C3B O3B NAP sing 259 n n C3B C2B NAP sing 260 n n C3B H3B NAP sing 261 n n O3B HO3A NAP sing 262 n n C2B O2B NAP sing 263 n n C2B C1B NAP sing 264 n n C2B H2B NAP sing 265 n n O2B P2B NAP sing 266 n n C1B N9A NAP sing 267 n n C1B H1B NAP sing 268 n n N9A C8A NAP sing 269 n y N9A C4A NAP sing 270 n y C8A N7A NAP doub 271 n y C8A H8A NAP sing 272 n n N7A C5A NAP sing 273 n y C5A C6A NAP sing 274 n y C5A C4A NAP doub 275 n y C6A N6A NAP sing 276 n n C6A N1A NAP doub 277 n y N6A H61A NAP sing 278 n n N6A H62A NAP sing 279 n n N1A C2A NAP sing 280 n y C2A N3A NAP doub 281 n y C2A H2A NAP sing 282 n n N3A C4A NAP sing 283 n y O3 PN NAP sing 284 n n PN O1N NAP doub 285 n n PN O2N NAP sing 286 n n PN O5D NAP sing 287 n n O5D C5D NAP sing 288 n n C5D C4D NAP sing 289 n n C5D H51N NAP sing 290 n n C5D H52N NAP sing 291 n n C4D O4D NAP sing 292 n n C4D C3D NAP sing 293 n n C4D H4D NAP sing 294 n n O4D C1D NAP sing 295 n n C3D O3D NAP sing 296 n n C3D C2D NAP sing 297 n n C3D H3D NAP sing 298 n n O3D HO3N NAP sing 299 n n C2D O2D NAP sing 300 n n C2D C1D NAP sing 301 n n C2D H2D NAP sing 302 n n O2D HO2N NAP sing 303 n n C1D N1N NAP sing 304 n n C1D H1D NAP sing 305 n n N1N C2N NAP sing 306 n y N1N C6N NAP doub 307 n y C2N C3N NAP doub 308 n y C2N H2N NAP sing 309 n n C3N C7N NAP sing 310 n n C3N C4N NAP sing 311 n y C7N O7N NAP doub 312 n n C7N N7N NAP sing 313 n n N7N H71N NAP sing 314 n n N7N H72N NAP sing 315 n n C4N C5N NAP doub 316 n y C4N H4N NAP sing 317 n n C5N C6N NAP sing 318 n y C5N H5N NAP sing 319 n n C6N H6N NAP sing 320 n n P2B O1X NAP doub 321 n n P2B O2X NAP sing 322 n n P2B O3X NAP sing 323 n n O2X HOP2 NAP sing 324 n n O3X HOP3 NAP sing 325 n n # _atom_sites.entry_id 6FQY _atom_sites.fract_transf_matrix[1][1] 0.010068 _atom_sites.fract_transf_matrix[1][2] 0.005813 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 501 500 NAP NAP . D 3 EDO A 1 502 1 EDO EDO . E 3 EDO A 1 503 2 EDO EDO . F 2 NAP B 1 500 500 NAP NAP . G 4 HOH A 1 601 9 HOH HOH . G 4 HOH A 2 602 25 HOH HOH . G 4 HOH A 3 603 4 HOH HOH . G 4 HOH A 4 604 7 HOH HOH . G 4 HOH A 5 605 14 HOH HOH . G 4 HOH A 6 606 1 HOH HOH . G 4 HOH A 7 607 2 HOH HOH . G 4 HOH A 8 608 28 HOH HOH . G 4 HOH A 9 609 31 HOH HOH . G 4 HOH A 10 610 8 HOH HOH . G 4 HOH A 11 611 12 HOH HOH . G 4 HOH A 12 612 29 HOH HOH . G 4 HOH A 13 613 30 HOH HOH . G 4 HOH A 14 614 27 HOH HOH . G 4 HOH A 15 615 18 HOH HOH . G 4 HOH A 16 616 22 HOH HOH . H 4 HOH B 1 601 11 HOH HOH . H 4 HOH B 2 602 5 HOH HOH . H 4 HOH B 3 603 15 HOH HOH . H 4 HOH B 4 604 23 HOH HOH . H 4 HOH B 5 605 32 HOH HOH . H 4 HOH B 6 606 16 HOH HOH . H 4 HOH B 7 607 19 HOH HOH . H 4 HOH B 8 608 21 HOH HOH . H 4 HOH B 9 609 6 HOH HOH . H 4 HOH B 10 610 3 HOH HOH . H 4 HOH B 11 611 24 HOH HOH . H 4 HOH B 12 612 13 HOH HOH . H 4 HOH B 13 613 10 HOH HOH . H 4 HOH B 14 614 26 HOH HOH . H 4 HOH B 15 615 17 HOH HOH . H 4 HOH B 16 616 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 86.134 38.237 14.114 1 128.65 ? PA NAP 501 A 1 HETATM 2 O O1A NAP . . . C 2 85.598 36.975 13.481 1 102.21 ? O1A NAP 501 A 1 HETATM 3 O O2A NAP . . . C 2 87.57 38.02 14.529 1 122.69 ? O2A NAP 501 A 1 HETATM 4 O O5B NAP . . . C 2 85.222 38.619 15.44 1 99.42 ? O5B NAP 501 A 1 HETATM 5 C C5B NAP . . . C 2 85.786 38.441 16.712 1 103.02 ? C5B NAP 501 A 1 HETATM 6 C C4B NAP . . . C 2 84.665 38.232 17.77 1 95.15 ? C4B NAP 501 A 1 HETATM 7 O O4B NAP . . . C 2 83.752 39.164 17.654 1 92.83 ? O4B NAP 501 A 1 HETATM 8 C C3B NAP . . . C 2 83.947 36.888 17.52 1 100.08 ? C3B NAP 501 A 1 HETATM 9 O O3B NAP . . . C 2 83.819 36.201 18.684 1 76.25 ? O3B NAP 501 A 1 HETATM 10 C C2B NAP . . . C 2 82.559 37.292 16.991 1 99.13 ? C2B NAP 501 A 1 HETATM 11 O O2B NAP . . . C 2 81.542 36.264 17.359 1 99.23 ? O2B NAP 501 A 1 HETATM 12 C C1B NAP . . . C 2 82.321 38.411 17.61 1 94.86 ? C1B NAP 501 A 1 HETATM 13 N N9A NAP . . . C 2 81.36 39.195 16.875 1 106.43 ? N9A NAP 501 A 1 HETATM 14 C C8A NAP . . . C 2 81.489 39.927 15.766 1 100.78 ? C8A NAP 501 A 1 HETATM 15 N N7A NAP . . . C 2 80.298 40.464 15.485 1 95.9 ? N7A NAP 501 A 1 HETATM 16 C C5A NAP . . . C 2 79.431 40.06 16.422 1 90.6 ? C5A NAP 501 A 1 HETATM 17 C C6A NAP . . . C 2 78.088 40.31 16.612 1 88.05 ? C6A NAP 501 A 1 HETATM 18 N N6A NAP . . . C 2 77.058 41.077 15.931 1 89.13 ? N6A NAP 501 A 1 HETATM 19 N N1A NAP . . . C 2 77.451 39.779 17.643 1 88.89 ? N1A NAP 501 A 1 HETATM 20 C C2A NAP . . . C 2 78.115 38.98 18.512 1 93.17 ? C2A NAP 501 A 1 HETATM 21 N N3A NAP . . . C 2 79.435 38.733 18.329 1 96.67 ? N3A NAP 501 A 1 HETATM 22 C C4A NAP . . . C 2 80.086 39.275 17.282 1 96.48 ? C4A NAP 501 A 1 HETATM 23 O O3 NAP . . . C 2 86.061 39.473 13.023 1 141.19 ? O3 NAP 501 A 1 HETATM 24 P PN NAP . . . C 2 86.762 40.949 13.263 1 147.94 ? PN NAP 501 A 1 HETATM 25 O O1N NAP . . . C 2 86.501 41.905 11.942 1 118.05 ? O1N NAP 501 A 1 HETATM 26 O O2N NAP . . . C 2 88.248 40.777 13.474 1 141.13 ? O2N NAP 501 A 1 HETATM 27 O O5D NAP . . . C 2 86.155 41.598 14.482 1 122.93 ? O5D NAP 501 A 1 HETATM 28 P P2B NAP . . . C 2 81.403 34.925 16.407 1 103.18 ? P2B NAP 501 A 1 HETATM 29 O O1X NAP . . . C 2 81.246 35.342 14.964 1 103.27 ? O1X NAP 501 A 1 HETATM 30 O O2X NAP . . . C 2 82.639 34.071 16.552 1 86.77 ? O2X NAP 501 A 1 HETATM 31 O O3X NAP . . . C 2 80.189 34.137 16.839 1 104.22 ? O3X NAP 501 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #