data_6FS9 # _model_server_result.job_id l6AlCqLv7KVpxTgIpWxYdQ _model_server_result.datetime_utc '2024-11-06 12:38:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fs9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6FS9 # _exptl.entry_id 6FS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Baloxavir acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FS9 _cell.length_a 63.71 _cell.length_b 63.71 _cell.length_c 125.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 49 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 A OE1 GLU 89 A GLU 81 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc3 A OD2 ASP 117 A ASP 109 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc4 A OD1 ASP 117 A ASP 109 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc5 A OE2 GLU 128 A GLU 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 A O VAL 129 A VAL 121 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O1 E4Z . A E4Z 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O2 E4Z . A E4Z 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O3 E4Z . A E4Z 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O2 E4Z . A E4Z 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc11 C MN MN . A MN 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc12 C MN MN . A MN 202 1_555 G O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'C24 H19 F2 N3 O4 S' _chem_comp.formula_weight 483.487 _chem_comp.id E4Z _chem_comp.mon_nstd_flag . _chem_comp.name 'Baloxavir acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 O4 E4Z sing 83 n n C9 C10 E4Z sing 84 n n O4 C8 E4Z sing 85 n n C10 N3 E4Z sing 86 n n C8 C7 E4Z sing 87 n n O3 C6 E4Z doub 88 n n N3 C6 E4Z sing 89 n n N3 C7 E4Z sing 90 n n C6 C4 E4Z sing 91 n n C7 N2 E4Z sing 92 n n O2 C5 E4Z sing 93 n n C4 C5 E4Z doub 94 n n C4 N1 E4Z sing 95 n n C5 C1 E4Z sing 96 n n N2 N1 E4Z sing 97 n n N2 C11 E4Z sing 98 n n N1 C3 E4Z sing 99 n n C1 O1 E4Z doub 100 n n C1 C2 E4Z sing 101 n n C3 C2 E4Z doub 102 n n C11 C12 E4Z sing 103 n n C11 C16 E4Z sing 104 n n C21 C22 E4Z doub 105 n y C21 C12 E4Z sing 106 n y C22 C23 E4Z sing 107 n y C12 C13 E4Z doub 108 n y C23 F2 E4Z sing 109 n n C23 C24 E4Z doub 110 n y C13 C24 E4Z sing 111 n y C13 C14 E4Z sing 112 n n C24 F1 E4Z sing 113 n n C14 S3 E4Z sing 114 n n C16 C20 E4Z doub 115 n y C16 C15 E4Z sing 116 n y C20 C19 E4Z sing 117 n y S3 C15 E4Z sing 118 n n C15 C17 E4Z doub 119 n y C19 C18 E4Z doub 120 n y C17 C18 E4Z sing 121 n y C2 H1 E4Z sing 122 n n C7 H3 E4Z sing 123 n n C14 H4 E4Z sing 124 n n C14 H5 E4Z sing 125 n n C17 H6 E4Z sing 126 n n C18 H7 E4Z sing 127 n n C19 H8 E4Z sing 128 n n C20 H9 E4Z sing 129 n n C21 H10 E4Z sing 130 n n C22 H11 E4Z sing 131 n n C11 H12 E4Z sing 132 n n C8 H13 E4Z sing 133 n n C8 H14 E4Z sing 134 n n C9 H15 E4Z sing 135 n n C9 H16 E4Z sing 136 n n C10 H17 E4Z sing 137 n n C10 H18 E4Z sing 138 n n C3 H19 E4Z sing 139 n n O2 H20 E4Z sing 140 n n # _atom_sites.entry_id 6FS9 _atom_sites.fract_transf_matrix[1][1] 0.015696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1195 MN MN . C 2 MN A 1 202 1196 MN MN . D 3 E4Z A 1 203 200 E4Z S47 . E 4 CL A 1 204 1 CL CL . F 4 CL A 1 205 1 CL CL . G 5 HOH A 1 301 1 HOH HOH . G 5 HOH A 2 302 4 HOH HOH . G 5 HOH A 3 303 10 HOH HOH . G 5 HOH A 4 304 9 HOH HOH . G 5 HOH A 5 305 5 HOH HOH . G 5 HOH A 6 306 3 HOH HOH . G 5 HOH A 7 307 11 HOH HOH . G 5 HOH A 8 308 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E4Z . . . D 3 10.085 14.336 -25.768 1 46.27 ? C1 E4Z 203 A 1 HETATM 2 N N1 E4Z . . . D 3 12.279 12.73 -26.357 1 44.28 ? N1 E4Z 203 A 1 HETATM 3 O O1 E4Z . . . D 3 9.083 15.015 -25.529 1 49.24 ? O1 E4Z 203 A 1 HETATM 4 C C2 E4Z . . . D 3 11.308 14.554 -25.174 1 45.45 ? C2 E4Z 203 A 1 HETATM 5 O O2 E4Z . . . D 3 8.827 13.068 -27.202 1 55.52 ? O2 E4Z 203 A 1 HETATM 6 O O3 E4Z . . . D 3 10.005 10.925 -28.568 1 46 ? O3 E4Z 203 A 1 HETATM 7 C C4 E4Z . . . D 3 11.046 12.42 -26.978 1 47.22 ? C4 E4Z 203 A 1 HETATM 8 O O4 E4Z . . . D 3 14.239 11.642 -30.106 1 50.06 ? O4 E4Z 203 A 1 HETATM 9 C C5 E4Z . . . D 3 9.952 13.23 -26.708 1 50.06 ? C5 E4Z 203 A 1 HETATM 10 C C6 E4Z . . . D 3 11.02 11.273 -27.976 1 49.28 ? C6 E4Z 203 A 1 HETATM 11 C C7 E4Z . . . D 3 13.493 11.207 -27.814 1 49.76 ? C7 E4Z 203 A 1 HETATM 12 C C13 E4Z . . . D 3 15.499 9.84 -25.331 1 56.21 ? C13 E4Z 203 A 1 HETATM 13 C C14 E4Z . . . D 3 16.009 11.273 -25.184 1 53.4 ? C14 E4Z 203 A 1 HETATM 14 C C15 E4Z . . . D 3 13.821 11.71 -23.266 1 55.49 ? C15 E4Z 203 A 1 HETATM 15 C C16 E4Z . . . D 3 12.86 11.209 -24.147 1 49.7 ? C16 E4Z 203 A 1 HETATM 16 C C17 E4Z . . . D 3 13.382 12.247 -22.057 1 59.1 ? C17 E4Z 203 A 1 HETATM 17 C C18 E4Z . . . D 3 12.032 12.269 -21.718 1 55.8 ? C18 E4Z 203 A 1 HETATM 18 C C19 E4Z . . . D 3 11.086 11.754 -22.576 1 57.41 ? C19 E4Z 203 A 1 HETATM 19 C C20 E4Z . . . D 3 11.513 11.23 -23.791 1 57.53 ? C20 E4Z 203 A 1 HETATM 20 C C21 E4Z . . . D 3 13.71 8.219 -25.43 1 52.69 ? C21 E4Z 203 A 1 HETATM 21 C C22 E4Z . . . D 3 14.64 7.147 -25.401 1 53.85 ? C22 E4Z 203 A 1 HETATM 22 C C23 E4Z . . . D 3 16 7.463 -25.334 1 57.28 ? C23 E4Z 203 A 1 HETATM 23 C C24 E4Z . . . D 3 16.409 8.77 -25.295 1 56.27 ? C24 E4Z 203 A 1 HETATM 24 F F2 E4Z . . . D 3 16.955 6.548 -25.303 1 62.4 ? F2 E4Z 203 A 1 HETATM 25 C C12 E4Z . . . D 3 14.133 9.569 -25.4 1 52.07 ? C12 E4Z 203 A 1 HETATM 26 F F1 E4Z . . . D 3 17.729 8.963 -25.229 1 59.05 ? F1 E4Z 203 A 1 HETATM 27 S S3 E4Z . . . D 3 15.498 11.79 -23.513 1 54.62 ? S3 E4Z 203 A 1 HETATM 28 C C11 E4Z . . . D 3 13.12 10.668 -25.478 1 50.48 ? C11 E4Z 203 A 1 HETATM 29 N N2 E4Z . . . D 3 13.355 11.816 -26.49 1 52.84 ? N2 E4Z 203 A 1 HETATM 30 C C8 E4Z . . . D 3 14.137 12.22 -28.778 1 49.17 ? C8 E4Z 203 A 1 HETATM 31 C C9 E4Z . . . D 3 12.974 11.039 -30.57 1 49.02 ? C9 E4Z 203 A 1 HETATM 32 C C10 E4Z . . . D 3 12.416 9.979 -29.569 1 47.03 ? C10 E4Z 203 A 1 HETATM 33 N N3 E4Z . . . D 3 12.2 10.785 -28.381 1 47.95 ? N3 E4Z 203 A 1 HETATM 34 C C3 E4Z . . . D 3 12.388 13.721 -25.499 1 43.71 ? C3 E4Z 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #