data_6FU2 # _model_server_result.job_id xpipMFexngtMWJqRPt_bcA _model_server_result.datetime_utc '2025-07-30 11:59:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fu2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":302}' # _entry.id 6FU2 # _exptl.entry_id 6FU2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.16 _cell.angle_gamma 90 _cell.entry_id 6FU2 _cell.length_a 102.72 _cell.length_b 146.2 _cell.length_c 94.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FU2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -102.72 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O1A PRP . C PRP 301 1_555 I MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc2 F O1B PRP . C PRP 301 1_555 I MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc3 G O2B ATP . C ATP 302 1_555 I MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc4 G O2A ATP . C ATP 302 1_555 I MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc5 H MG MG . C MG 303 1_555 K O2A PRP . D PRP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 H MG MG . C MG 303 1_555 K O2B PRP . D PRP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc7 H MG MG . C MG 303 1_555 L O2B ATP . D ATP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc8 H MG MG . C MG 303 1_555 L O1A ATP . D ATP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6FU2 _atom_sites.fract_transf_matrix[1][1] 0.009735 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002098 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 TRS B 1 401 3 TRS TRS . F 4 PRP C 1 301 400 PRP PRP . G 5 ATP C 1 302 500 ATP ATP . H 6 MG C 1 303 1 MG MG . I 6 MG C 1 304 2 MG MG . J 3 TRS C 1 305 1 TRS TRS . K 4 PRP D 1 301 400 PRP PRP . L 5 ATP D 1 302 500 ATP ATP . M 3 TRS D 1 303 2 TRS TRS . N 7 HOH A 1 401 9 HOH HOH . N 7 HOH A 2 402 11 HOH HOH . N 7 HOH A 3 403 10 HOH HOH . O 7 HOH B 1 501 8 HOH HOH . O 7 HOH B 2 502 7 HOH HOH . O 7 HOH B 3 503 6 HOH HOH . O 7 HOH B 4 504 2 HOH HOH . O 7 HOH B 5 505 1 HOH HOH . P 7 HOH D 1 401 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . L 5 -20.782 2.855 25.455 1 128.4 ? PG ATP 302 D 1 HETATM 2 O O1G ATP . . . L 5 -21.393 1.794 24.572 1 120.86 -1 O1G ATP 302 D 1 HETATM 3 O O2G ATP . . . L 5 -19.565 2.365 26.213 1 123.67 -1 O2G ATP 302 D 1 HETATM 4 O O3G ATP . . . L 5 -21.799 3.517 26.354 1 123.81 ? O3G ATP 302 D 1 HETATM 5 P PB ATP . . . L 5 -19.39 5.34 24.695 1 121.9 ? PB ATP 302 D 1 HETATM 6 O O1B ATP . . . L 5 -20.065 6.503 24.049 1 115.77 ? O1B ATP 302 D 1 HETATM 7 O O2B ATP . . . L 5 -17.959 5.047 24.375 1 117.6 -1 O2B ATP 302 D 1 HETATM 8 O O3B ATP . . . L 5 -20.254 4.012 24.458 1 121.08 ? O3B ATP 302 D 1 HETATM 9 P PA ATP . . . L 5 -18.757 6.471 27.284 1 98.75 ? PA ATP 302 D 1 HETATM 10 O O1A ATP . . . L 5 -17.295 6.267 27.069 1 102.45 -1 O1A ATP 302 D 1 HETATM 11 O O2A ATP . . . L 5 -19.302 6.259 28.656 1 99.27 ? O2A ATP 302 D 1 HETATM 12 O O3A ATP . . . L 5 -19.548 5.518 26.275 1 107.92 ? O3A ATP 302 D 1 HETATM 13 O O5' ATP . . . L 5 -19.182 7.921 26.737 1 95.51 ? O5' ATP 302 D 1 HETATM 14 C C5' ATP . . . L 5 -20.234 8.662 27.411 1 93.94 ? C5' ATP 302 D 1 HETATM 15 C C4' ATP . . . L 5 -20.303 10.065 26.862 1 90.19 ? C4' ATP 302 D 1 HETATM 16 O O4' ATP . . . L 5 -18.988 10.667 26.934 1 92.41 ? O4' ATP 302 D 1 HETATM 17 C C3' ATP . . . L 5 -20.703 10.199 25.39 1 89.34 ? C3' ATP 302 D 1 HETATM 18 O O3' ATP . . . L 5 -22.116 10.24 25.253 1 90.53 ? O3' ATP 302 D 1 HETATM 19 C C2' ATP . . . L 5 -20.066 11.537 25.005 1 90.02 ? C2' ATP 302 D 1 HETATM 20 O O2' ATP . . . L 5 -20.9 12.63 25.318 1 93.48 ? O2' ATP 302 D 1 HETATM 21 C C1' ATP . . . L 5 -18.8 11.566 25.862 1 92.43 ? C1' ATP 302 D 1 HETATM 22 N N9 ATP . . . L 5 -17.576 11.176 25.155 1 91.94 ? N9 ATP 302 D 1 HETATM 23 C C8 ATP . . . L 5 -17.386 10.067 24.367 1 88.37 ? C8 ATP 302 D 1 HETATM 24 N N7 ATP . . . L 5 -16.169 10.001 23.88 1 85.69 ? N7 ATP 302 D 1 HETATM 25 C C5 ATP . . . L 5 -15.522 11.123 24.378 1 87.3 ? C5 ATP 302 D 1 HETATM 26 C C6 ATP . . . L 5 -14.21 11.617 24.226 1 86.16 ? C6 ATP 302 D 1 HETATM 27 N N6 ATP . . . L 5 -13.277 11.016 23.493 1 84.63 ? N6 ATP 302 D 1 HETATM 28 N N1 ATP . . . L 5 -13.896 12.768 24.87 1 87.22 ? N1 ATP 302 D 1 HETATM 29 C C2 ATP . . . L 5 -14.843 13.37 25.604 1 87.4 ? C2 ATP 302 D 1 HETATM 30 N N3 ATP . . . L 5 -16.106 13.002 25.812 1 89.57 ? N3 ATP 302 D 1 HETATM 31 C C4 ATP . . . L 5 -16.384 11.855 25.167 1 90.18 ? C4 ATP 302 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #