data_6FUF # _model_server_result.job_id XywN43sE4GlHClHBfQjHBg _model_server_result.datetime_utc '2024-11-21 15:05:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fuf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6FUF # _exptl.entry_id 6FUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FUF _cell.length_a 151.359 _cell.length_b 151.359 _cell.length_c 96.652 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 2 1_555 A SG CYS 281 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 109 A CYS 110 1_555 A SG CYS 186 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 14 A ASN 15 1_555 D C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? covale ? covale2 A NZ LYS 295 A LYS 296 1_555 C C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.281 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 307 n n C1 C6 RET sing 308 n n C1 C16 RET sing 309 n n C1 C17 RET sing 310 n n C2 C3 RET sing 311 n n C2 H21 RET sing 312 n n C2 H22 RET sing 313 n n C3 C4 RET sing 314 n n C3 H31 RET sing 315 n n C3 H32 RET sing 316 n n C4 C5 RET sing 317 n n C4 H41 RET sing 318 n n C4 H42 RET sing 319 n n C5 C6 RET doub 320 n n C5 C18 RET sing 321 n n C6 C7 RET sing 322 n n C7 C8 RET doub 323 e n C7 H7 RET sing 324 n n C8 C9 RET sing 325 n n C8 H8 RET sing 326 n n C9 C10 RET doub 327 e n C9 C19 RET sing 328 n n C10 C11 RET sing 329 n n C10 H10 RET sing 330 n n C11 C12 RET doub 331 e n C11 H11 RET sing 332 n n C12 C13 RET sing 333 n n C12 H12 RET sing 334 n n C13 C14 RET doub 335 e n C13 C20 RET sing 336 n n C14 C15 RET sing 337 n n C14 H14 RET sing 338 n n C15 O1 RET doub 339 n n C15 H15 RET sing 340 n n C16 H161 RET sing 341 n n C16 H162 RET sing 342 n n C16 H163 RET sing 343 n n C17 H171 RET sing 344 n n C17 H172 RET sing 345 n n C17 H173 RET sing 346 n n C18 H181 RET sing 347 n n C18 H182 RET sing 348 n n C18 H183 RET sing 349 n n C19 H191 RET sing 350 n n C19 H192 RET sing 351 n n C19 H193 RET sing 352 n n C20 H201 RET sing 353 n n C20 H202 RET sing 354 n n C20 H203 RET sing 355 n n # _atom_sites.entry_id 6FUF _atom_sites.fract_transf_matrix[1][1] 0.006607 _atom_sites.fract_transf_matrix[1][2] 0.003814 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RET A 1 401 401 RET RET . D 4 NAG A 1 402 601 NAG NAG . E 5 HOH A 1 501 1 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . C 3 -27.339 51.198 -29.32 0.77 86.42 ? C1 RET 401 A 1 HETATM 2 C C2 RET . . . C 3 -27.174 51.266 -27.797 0.77 82.3 ? C2 RET 401 A 1 HETATM 3 C C3 RET . . . C 3 -26.213 52.366 -27.377 0.77 80.74 ? C3 RET 401 A 1 HETATM 4 C C4 RET . . . C 3 -24.837 52.134 -27.981 0.77 88.79 ? C4 RET 401 A 1 HETATM 5 C C5 RET . . . C 3 -24.852 51.622 -29.397 0.77 88.74 ? C5 RET 401 A 1 HETATM 6 C C6 RET . . . C 3 -25.969 51.191 -30.007 0.77 92.8 ? C6 RET 401 A 1 HETATM 7 C C7 RET . . . C 3 -25.984 50.656 -31.384 0.77 90.51 ? C7 RET 401 A 1 HETATM 8 C C8 RET . . . C 3 -25.315 49.599 -31.844 0.77 83.79 ? C8 RET 401 A 1 HETATM 9 C C9 RET . . . C 3 -25.348 49.054 -33.186 0.77 86.62 ? C9 RET 401 A 1 HETATM 10 C C10 RET . . . C 3 -24.672 47.915 -33.452 0.77 90.29 ? C10 RET 401 A 1 HETATM 11 C C11 RET . . . C 3 -24.778 47.131 -34.621 0.77 96.26 ? C11 RET 401 A 1 HETATM 12 C C12 RET . . . C 3 -24.11 46.023 -34.856 0.77 97.56 ? C12 RET 401 A 1 HETATM 13 C C13 RET . . . C 3 -24.26 45.211 -36.02 0.77 97.93 ? C13 RET 401 A 1 HETATM 14 C C14 RET . . . C 3 -23.676 43.986 -35.932 0.77 107.31 ? C14 RET 401 A 1 HETATM 15 C C15 RET . . . C 3 -23.65 42.71 -36.46 0.77 105.09 ? C15 RET 401 A 1 HETATM 16 C C16 RET . . . C 3 -28.13 49.938 -29.69 0.77 85.6 ? C16 RET 401 A 1 HETATM 17 C C17 RET . . . C 3 -28.15 52.421 -29.758 0.77 81.07 ? C17 RET 401 A 1 HETATM 18 C C18 RET . . . C 3 -23.492 51.651 -30.04 0.77 79.13 ? C18 RET 401 A 1 HETATM 19 C C19 RET . . . C 3 -26.245 49.715 -34.195 0.77 88.83 ? C19 RET 401 A 1 HETATM 20 C C20 RET . . . C 3 -25.202 45.609 -37.093 0.77 84.24 ? C20 RET 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #