data_6FV2 # _model_server_result.job_id CeXWBsCeYLbGfikwVD3ASQ _model_server_result.datetime_utc '2024-12-26 10:52:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 6FV2 # _exptl.entry_id 6FV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FV2 _cell.length_a 131.115 _cell.length_b 211.044 _cell.length_c 115.63 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 144 A CYS 144 1_555 E C57 D03 . A D03 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale2 B SG CYS 144 B CYS 144 1_555 G C57 D03 . B D03 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? covale ? covale3 C SG CYS 144 C CYS 144 1_555 I C57 D03 . C D03 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 210 n n C1 C2 GOL sing 211 n n C1 H11 GOL sing 212 n n C1 H12 GOL sing 213 n n O1 HO1 GOL sing 214 n n C2 O2 GOL sing 215 n n C2 C3 GOL sing 216 n n C2 H2 GOL sing 217 n n O2 HO2 GOL sing 218 n n C3 O3 GOL sing 219 n n C3 H31 GOL sing 220 n n C3 H32 GOL sing 221 n n O3 HO3 GOL sing 222 n n # _atom_sites.entry_id 6FV2 _atom_sites.fract_transf_matrix[1][1] 0.007627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 401 2 GOL GOL . E 3 D03 A 1 402 1 D03 D03 . F 2 GOL B 1 401 3 GOL GOL . G 3 D03 B 1 402 2 D03 D03 . H 2 GOL C 1 401 4 GOL GOL . I 3 D03 C 1 402 3 D03 D03 . J 4 HOH A 1 501 268 HOH HOH . J 4 HOH A 2 502 241 HOH HOH . J 4 HOH A 3 503 348 HOH HOH . J 4 HOH A 4 504 292 HOH HOH . J 4 HOH A 5 505 282 HOH HOH . J 4 HOH A 6 506 229 HOH HOH . J 4 HOH A 7 507 336 HOH HOH . J 4 HOH A 8 508 280 HOH HOH . J 4 HOH A 9 509 355 HOH HOH . J 4 HOH A 10 510 351 HOH HOH . J 4 HOH A 11 511 242 HOH HOH . J 4 HOH A 12 512 249 HOH HOH . J 4 HOH A 13 513 102 HOH HOH . J 4 HOH A 14 514 272 HOH HOH . J 4 HOH A 15 515 207 HOH HOH . J 4 HOH A 16 516 330 HOH HOH . J 4 HOH A 17 517 17 HOH HOH . J 4 HOH A 18 518 286 HOH HOH . J 4 HOH A 19 519 188 HOH HOH . J 4 HOH A 20 520 284 HOH HOH . J 4 HOH A 21 521 206 HOH HOH . J 4 HOH A 22 522 233 HOH HOH . J 4 HOH A 23 523 396 HOH HOH . J 4 HOH A 24 524 296 HOH HOH . J 4 HOH A 25 525 317 HOH HOH . J 4 HOH A 26 526 205 HOH HOH . J 4 HOH A 27 527 248 HOH HOH . J 4 HOH A 28 528 329 HOH HOH . J 4 HOH A 29 529 231 HOH HOH . J 4 HOH A 30 530 158 HOH HOH . J 4 HOH A 31 531 200 HOH HOH . J 4 HOH A 32 532 401 HOH HOH . J 4 HOH A 33 533 164 HOH HOH . J 4 HOH A 34 534 343 HOH HOH . J 4 HOH A 35 535 159 HOH HOH . J 4 HOH A 36 536 308 HOH HOH . J 4 HOH A 37 537 303 HOH HOH . J 4 HOH A 38 538 327 HOH HOH . J 4 HOH A 39 539 366 HOH HOH . J 4 HOH A 40 540 293 HOH HOH . J 4 HOH A 41 541 189 HOH HOH . J 4 HOH A 42 542 332 HOH HOH . J 4 HOH A 43 543 316 HOH HOH . J 4 HOH A 44 544 412 HOH HOH . J 4 HOH A 45 545 326 HOH HOH . J 4 HOH A 46 546 246 HOH HOH . J 4 HOH A 47 547 81 HOH HOH . J 4 HOH A 48 548 117 HOH HOH . J 4 HOH A 49 549 211 HOH HOH . J 4 HOH A 50 550 291 HOH HOH . J 4 HOH A 51 551 448 HOH HOH . J 4 HOH A 52 552 270 HOH HOH . J 4 HOH A 53 553 391 HOH HOH . J 4 HOH A 54 554 118 HOH HOH . J 4 HOH A 55 555 373 HOH HOH . J 4 HOH A 56 556 285 HOH HOH . J 4 HOH A 57 557 298 HOH HOH . J 4 HOH A 58 558 95 HOH HOH . J 4 HOH A 59 559 367 HOH HOH . J 4 HOH A 60 560 208 HOH HOH . J 4 HOH A 61 561 315 HOH HOH . J 4 HOH A 62 562 349 HOH HOH . J 4 HOH A 63 563 234 HOH HOH . J 4 HOH A 64 564 380 HOH HOH . J 4 HOH A 65 565 90 HOH HOH . J 4 HOH A 66 566 325 HOH HOH . J 4 HOH A 67 567 176 HOH HOH . J 4 HOH A 68 568 387 HOH HOH . J 4 HOH A 69 569 424 HOH HOH . J 4 HOH A 70 570 204 HOH HOH . J 4 HOH A 71 571 347 HOH HOH . J 4 HOH A 72 572 107 HOH HOH . J 4 HOH A 73 573 85 HOH HOH . J 4 HOH A 74 574 290 HOH HOH . J 4 HOH A 75 575 409 HOH HOH . J 4 HOH A 76 576 101 HOH HOH . J 4 HOH A 77 577 273 HOH HOH . J 4 HOH A 78 578 334 HOH HOH . J 4 HOH A 79 579 288 HOH HOH . J 4 HOH A 80 580 346 HOH HOH . J 4 HOH A 81 581 420 HOH HOH . J 4 HOH A 82 582 363 HOH HOH . J 4 HOH A 83 583 314 HOH HOH . J 4 HOH A 84 584 344 HOH HOH . J 4 HOH A 85 585 83 HOH HOH . J 4 HOH A 86 586 419 HOH HOH . J 4 HOH A 87 587 393 HOH HOH . J 4 HOH A 88 588 422 HOH HOH . J 4 HOH A 89 589 388 HOH HOH . K 4 HOH B 1 501 266 HOH HOH . K 4 HOH B 2 502 365 HOH HOH . K 4 HOH B 3 503 385 HOH HOH . K 4 HOH B 4 504 251 HOH HOH . K 4 HOH B 5 505 166 HOH HOH . K 4 HOH B 6 506 271 HOH HOH . K 4 HOH B 7 507 404 HOH HOH . K 4 HOH B 8 508 276 HOH HOH . K 4 HOH B 9 509 197 HOH HOH . K 4 HOH B 10 510 328 HOH HOH . K 4 HOH B 11 511 309 HOH HOH . K 4 HOH B 12 512 255 HOH HOH . K 4 HOH B 13 513 352 HOH HOH . K 4 HOH B 14 514 402 HOH HOH . K 4 HOH B 15 515 383 HOH HOH . K 4 HOH B 16 516 400 HOH HOH . K 4 HOH B 17 517 162 HOH HOH . K 4 HOH B 18 518 368 HOH HOH . K 4 HOH B 19 519 429 HOH HOH . K 4 HOH B 20 520 434 HOH HOH . K 4 HOH B 21 521 254 HOH HOH . K 4 HOH B 22 522 337 HOH HOH . K 4 HOH B 23 523 252 HOH HOH . K 4 HOH B 24 524 340 HOH HOH . K 4 HOH B 25 525 421 HOH HOH . K 4 HOH B 26 526 395 HOH HOH . K 4 HOH B 27 527 359 HOH HOH . K 4 HOH B 28 528 339 HOH HOH . K 4 HOH B 29 529 149 HOH HOH . K 4 HOH B 30 530 167 HOH HOH . K 4 HOH B 31 531 281 HOH HOH . K 4 HOH B 32 532 5 HOH HOH . K 4 HOH B 33 533 168 HOH HOH . K 4 HOH B 34 534 428 HOH HOH . K 4 HOH B 35 535 267 HOH HOH . K 4 HOH B 36 536 406 HOH HOH . K 4 HOH B 37 537 382 HOH HOH . K 4 HOH B 38 538 417 HOH HOH . K 4 HOH B 39 539 165 HOH HOH . K 4 HOH B 40 540 299 HOH HOH . K 4 HOH B 41 541 398 HOH HOH . K 4 HOH B 42 542 121 HOH HOH . K 4 HOH B 43 543 341 HOH HOH . K 4 HOH B 44 544 423 HOH HOH . K 4 HOH B 45 545 418 HOH HOH . K 4 HOH B 46 546 169 HOH HOH . K 4 HOH B 47 547 414 HOH HOH . K 4 HOH B 48 548 425 HOH HOH . K 4 HOH B 49 549 301 HOH HOH . K 4 HOH B 50 550 300 HOH HOH . K 4 HOH B 51 551 6 HOH HOH . K 4 HOH B 52 552 394 HOH HOH . K 4 HOH B 53 553 426 HOH HOH . K 4 HOH B 54 554 430 HOH HOH . K 4 HOH B 55 555 274 HOH HOH . K 4 HOH B 56 556 338 HOH HOH . K 4 HOH B 57 557 433 HOH HOH . K 4 HOH B 58 558 407 HOH HOH . K 4 HOH B 59 559 269 HOH HOH . K 4 HOH B 60 560 376 HOH HOH . K 4 HOH B 61 561 362 HOH HOH . K 4 HOH B 62 562 427 HOH HOH . K 4 HOH B 63 563 312 HOH HOH . K 4 HOH B 64 564 371 HOH HOH . K 4 HOH B 65 565 313 HOH HOH . K 4 HOH B 66 566 416 HOH HOH . K 4 HOH B 67 567 432 HOH HOH . K 4 HOH B 68 568 370 HOH HOH . K 4 HOH B 69 569 361 HOH HOH . L 4 HOH C 1 501 97 HOH HOH . L 4 HOH C 2 502 289 HOH HOH . L 4 HOH C 3 503 174 HOH HOH . L 4 HOH C 4 504 260 HOH HOH . L 4 HOH C 5 505 235 HOH HOH . L 4 HOH C 6 506 203 HOH HOH . L 4 HOH C 7 507 431 HOH HOH . L 4 HOH C 8 508 294 HOH HOH . L 4 HOH C 9 509 386 HOH HOH . L 4 HOH C 10 510 441 HOH HOH . L 4 HOH C 11 511 264 HOH HOH . L 4 HOH C 12 512 357 HOH HOH . L 4 HOH C 13 513 259 HOH HOH . L 4 HOH C 14 514 445 HOH HOH . L 4 HOH C 15 515 447 HOH HOH . L 4 HOH C 16 516 378 HOH HOH . L 4 HOH C 17 517 356 HOH HOH . L 4 HOH C 18 518 287 HOH HOH . L 4 HOH C 19 519 297 HOH HOH . L 4 HOH C 20 520 275 HOH HOH . L 4 HOH C 21 521 134 HOH HOH . L 4 HOH C 22 522 170 HOH HOH . L 4 HOH C 23 523 305 HOH HOH . L 4 HOH C 24 524 261 HOH HOH . L 4 HOH C 25 525 226 HOH HOH . L 4 HOH C 26 526 358 HOH HOH . L 4 HOH C 27 527 444 HOH HOH . L 4 HOH C 28 528 320 HOH HOH . L 4 HOH C 29 529 244 HOH HOH . L 4 HOH C 30 530 150 HOH HOH . L 4 HOH C 31 531 178 HOH HOH . L 4 HOH C 32 532 364 HOH HOH . L 4 HOH C 33 533 342 HOH HOH . L 4 HOH C 34 534 321 HOH HOH . L 4 HOH C 35 535 439 HOH HOH . L 4 HOH C 36 536 41 HOH HOH . L 4 HOH C 37 537 112 HOH HOH . L 4 HOH C 38 538 408 HOH HOH . L 4 HOH C 39 539 163 HOH HOH . L 4 HOH C 40 540 262 HOH HOH . L 4 HOH C 41 541 375 HOH HOH . L 4 HOH C 42 542 389 HOH HOH . L 4 HOH C 43 543 202 HOH HOH . L 4 HOH C 44 544 278 HOH HOH . L 4 HOH C 45 545 324 HOH HOH . L 4 HOH C 46 546 443 HOH HOH . L 4 HOH C 47 547 390 HOH HOH . L 4 HOH C 48 548 98 HOH HOH . L 4 HOH C 49 549 438 HOH HOH . L 4 HOH C 50 550 279 HOH HOH . L 4 HOH C 51 551 307 HOH HOH . L 4 HOH C 52 552 374 HOH HOH . L 4 HOH C 53 553 318 HOH HOH . L 4 HOH C 54 554 58 HOH HOH . L 4 HOH C 55 555 360 HOH HOH . L 4 HOH C 56 556 323 HOH HOH . L 4 HOH C 57 557 440 HOH HOH . L 4 HOH C 58 558 161 HOH HOH . L 4 HOH C 59 559 354 HOH HOH . L 4 HOH C 60 560 148 HOH HOH . L 4 HOH C 61 561 179 HOH HOH . L 4 HOH C 62 562 230 HOH HOH . L 4 HOH C 63 563 381 HOH HOH . L 4 HOH C 64 564 306 HOH HOH . L 4 HOH C 65 565 411 HOH HOH . L 4 HOH C 66 566 322 HOH HOH . L 4 HOH C 67 567 449 HOH HOH . L 4 HOH C 68 568 379 HOH HOH . L 4 HOH C 69 569 415 HOH HOH . L 4 HOH C 70 570 397 HOH HOH . L 4 HOH C 71 571 310 HOH HOH . L 4 HOH C 72 572 295 HOH HOH . L 4 HOH C 73 573 160 HOH HOH . L 4 HOH C 74 574 437 HOH HOH . L 4 HOH C 75 575 442 HOH HOH . L 4 HOH C 76 576 331 HOH HOH . L 4 HOH C 77 577 405 HOH HOH . L 4 HOH C 78 578 410 HOH HOH . L 4 HOH C 79 579 319 HOH HOH . L 4 HOH C 80 580 446 HOH HOH . L 4 HOH C 81 581 377 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 55.927 14.022 -1.297 1 44.09 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . F 2 56.605 14.204 -0.087 1 42.82 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . F 2 56.777 14.421 -2.526 1 51.8 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . F 2 56.671 15.802 -2.928 1 51.31 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . F 2 58.239 13.944 -2.433 1 59.1 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . F 2 58.757 13.715 -3.778 1 65.06 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #