data_6FVG # _model_server_result.job_id 0Htp54wZWzlI5J4lyJ7S7g _model_server_result.datetime_utc '2024-11-26 11:08:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6FVG # _exptl.entry_id 6FVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.22 _cell.angle_gamma 90 _cell.entry_id 6FVG _cell.length_a 60.183 _cell.length_b 45.931 _cell.length_c 63.706 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6FVG _atom_sites.fract_transf_matrix[1][1] 0.016616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006452 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E8K A 1 401 1 E8K 507 . C 3 ATP A 1 402 1 ATP ATP . D 4 HOH A 1 501 27 HOH HOH . D 4 HOH A 2 502 107 HOH HOH . D 4 HOH A 3 503 122 HOH HOH . D 4 HOH A 4 504 45 HOH HOH . D 4 HOH A 5 505 221 HOH HOH . D 4 HOH A 6 506 105 HOH HOH . D 4 HOH A 7 507 114 HOH HOH . D 4 HOH A 8 508 223 HOH HOH . D 4 HOH A 9 509 104 HOH HOH . D 4 HOH A 10 510 60 HOH HOH . D 4 HOH A 11 511 96 HOH HOH . D 4 HOH A 12 512 215 HOH HOH . D 4 HOH A 13 513 135 HOH HOH . D 4 HOH A 14 514 50 HOH HOH . D 4 HOH A 15 515 97 HOH HOH . D 4 HOH A 16 516 94 HOH HOH . D 4 HOH A 17 517 38 HOH HOH . D 4 HOH A 18 518 26 HOH HOH . D 4 HOH A 19 519 154 HOH HOH . D 4 HOH A 20 520 71 HOH HOH . D 4 HOH A 21 521 80 HOH HOH . D 4 HOH A 22 522 218 HOH HOH . D 4 HOH A 23 523 8 HOH HOH . D 4 HOH A 24 524 82 HOH HOH . D 4 HOH A 25 525 23 HOH HOH . D 4 HOH A 26 526 197 HOH HOH . D 4 HOH A 27 527 12 HOH HOH . D 4 HOH A 28 528 133 HOH HOH . D 4 HOH A 29 529 111 HOH HOH . D 4 HOH A 30 530 63 HOH HOH . D 4 HOH A 31 531 92 HOH HOH . D 4 HOH A 32 532 206 HOH HOH . D 4 HOH A 33 533 120 HOH HOH . D 4 HOH A 34 534 11 HOH HOH . D 4 HOH A 35 535 44 HOH HOH . D 4 HOH A 36 536 20 HOH HOH . D 4 HOH A 37 537 155 HOH HOH . D 4 HOH A 38 538 95 HOH HOH . D 4 HOH A 39 539 74 HOH HOH . D 4 HOH A 40 540 200 HOH HOH . D 4 HOH A 41 541 225 HOH HOH . D 4 HOH A 42 542 161 HOH HOH . D 4 HOH A 43 543 59 HOH HOH . D 4 HOH A 44 544 7 HOH HOH . D 4 HOH A 45 545 183 HOH HOH . D 4 HOH A 46 546 68 HOH HOH . D 4 HOH A 47 547 150 HOH HOH . D 4 HOH A 48 548 29 HOH HOH . D 4 HOH A 49 549 199 HOH HOH . D 4 HOH A 50 550 100 HOH HOH . D 4 HOH A 51 551 79 HOH HOH . D 4 HOH A 52 552 171 HOH HOH . D 4 HOH A 53 553 136 HOH HOH . D 4 HOH A 54 554 203 HOH HOH . D 4 HOH A 55 555 28 HOH HOH . D 4 HOH A 56 556 178 HOH HOH . D 4 HOH A 57 557 35 HOH HOH . D 4 HOH A 58 558 14 HOH HOH . D 4 HOH A 59 559 164 HOH HOH . D 4 HOH A 60 560 129 HOH HOH . D 4 HOH A 61 561 30 HOH HOH . D 4 HOH A 62 562 224 HOH HOH . D 4 HOH A 63 563 123 HOH HOH . D 4 HOH A 64 564 61 HOH HOH . D 4 HOH A 65 565 15 HOH HOH . D 4 HOH A 66 566 131 HOH HOH . D 4 HOH A 67 567 99 HOH HOH . D 4 HOH A 68 568 108 HOH HOH . D 4 HOH A 69 569 48 HOH HOH . D 4 HOH A 70 570 10 HOH HOH . D 4 HOH A 71 571 18 HOH HOH . D 4 HOH A 72 572 219 HOH HOH . D 4 HOH A 73 573 62 HOH HOH . D 4 HOH A 74 574 46 HOH HOH . D 4 HOH A 75 575 55 HOH HOH . D 4 HOH A 76 576 118 HOH HOH . D 4 HOH A 77 577 191 HOH HOH . D 4 HOH A 78 578 177 HOH HOH . D 4 HOH A 79 579 149 HOH HOH . D 4 HOH A 80 580 182 HOH HOH . D 4 HOH A 81 581 25 HOH HOH . D 4 HOH A 82 582 42 HOH HOH . D 4 HOH A 83 583 16 HOH HOH . D 4 HOH A 84 584 173 HOH HOH . D 4 HOH A 85 585 130 HOH HOH . D 4 HOH A 86 586 163 HOH HOH . D 4 HOH A 87 587 190 HOH HOH . D 4 HOH A 88 588 89 HOH HOH . D 4 HOH A 89 589 3 HOH HOH . D 4 HOH A 90 590 9 HOH HOH . D 4 HOH A 91 591 33 HOH HOH . D 4 HOH A 92 592 187 HOH HOH . D 4 HOH A 93 593 188 HOH HOH . D 4 HOH A 94 594 13 HOH HOH . D 4 HOH A 95 595 132 HOH HOH . D 4 HOH A 96 596 141 HOH HOH . D 4 HOH A 97 597 1 HOH HOH . D 4 HOH A 98 598 77 HOH HOH . D 4 HOH A 99 599 83 HOH HOH . D 4 HOH A 100 600 32 HOH HOH . D 4 HOH A 101 601 6 HOH HOH . D 4 HOH A 102 602 40 HOH HOH . D 4 HOH A 103 603 5 HOH HOH . D 4 HOH A 104 604 194 HOH HOH . D 4 HOH A 105 605 127 HOH HOH . D 4 HOH A 106 606 76 HOH HOH . D 4 HOH A 107 607 54 HOH HOH . D 4 HOH A 108 608 216 HOH HOH . D 4 HOH A 109 609 75 HOH HOH . D 4 HOH A 110 610 101 HOH HOH . D 4 HOH A 111 611 4 HOH HOH . D 4 HOH A 112 612 144 HOH HOH . D 4 HOH A 113 613 110 HOH HOH . D 4 HOH A 114 614 179 HOH HOH . D 4 HOH A 115 615 140 HOH HOH . D 4 HOH A 116 616 113 HOH HOH . D 4 HOH A 117 617 170 HOH HOH . D 4 HOH A 118 618 168 HOH HOH . D 4 HOH A 119 619 21 HOH HOH . D 4 HOH A 120 620 58 HOH HOH . D 4 HOH A 121 621 47 HOH HOH . D 4 HOH A 122 622 117 HOH HOH . D 4 HOH A 123 623 148 HOH HOH . D 4 HOH A 124 624 153 HOH HOH . D 4 HOH A 125 625 174 HOH HOH . D 4 HOH A 126 626 2 HOH HOH . D 4 HOH A 127 627 185 HOH HOH . D 4 HOH A 128 628 78 HOH HOH . D 4 HOH A 129 629 169 HOH HOH . D 4 HOH A 130 630 65 HOH HOH . D 4 HOH A 131 631 39 HOH HOH . D 4 HOH A 132 632 70 HOH HOH . D 4 HOH A 133 633 159 HOH HOH . D 4 HOH A 134 634 103 HOH HOH . D 4 HOH A 135 635 51 HOH HOH . D 4 HOH A 136 636 152 HOH HOH . D 4 HOH A 137 637 57 HOH HOH . D 4 HOH A 138 638 91 HOH HOH . D 4 HOH A 139 639 195 HOH HOH . D 4 HOH A 140 640 172 HOH HOH . D 4 HOH A 141 641 184 HOH HOH . D 4 HOH A 142 642 31 HOH HOH . D 4 HOH A 143 643 134 HOH HOH . D 4 HOH A 144 644 186 HOH HOH . D 4 HOH A 145 645 37 HOH HOH . D 4 HOH A 146 646 125 HOH HOH . D 4 HOH A 147 647 198 HOH HOH . D 4 HOH A 148 648 53 HOH HOH . D 4 HOH A 149 649 43 HOH HOH . D 4 HOH A 150 650 157 HOH HOH . D 4 HOH A 151 651 36 HOH HOH . D 4 HOH A 152 652 85 HOH HOH . D 4 HOH A 153 653 22 HOH HOH . D 4 HOH A 154 654 126 HOH HOH . D 4 HOH A 155 655 66 HOH HOH . D 4 HOH A 156 656 49 HOH HOH . D 4 HOH A 157 657 56 HOH HOH . D 4 HOH A 158 658 204 HOH HOH . D 4 HOH A 159 659 128 HOH HOH . D 4 HOH A 160 660 214 HOH HOH . D 4 HOH A 161 661 207 HOH HOH . D 4 HOH A 162 662 124 HOH HOH . D 4 HOH A 163 663 211 HOH HOH . D 4 HOH A 164 664 69 HOH HOH . D 4 HOH A 165 665 217 HOH HOH . D 4 HOH A 166 666 138 HOH HOH . D 4 HOH A 167 667 176 HOH HOH . D 4 HOH A 168 668 166 HOH HOH . D 4 HOH A 169 669 142 HOH HOH . D 4 HOH A 170 670 84 HOH HOH . D 4 HOH A 171 671 145 HOH HOH . D 4 HOH A 172 672 222 HOH HOH . D 4 HOH A 173 673 67 HOH HOH . D 4 HOH A 174 674 115 HOH HOH . D 4 HOH A 175 675 17 HOH HOH . D 4 HOH A 176 676 86 HOH HOH . D 4 HOH A 177 677 212 HOH HOH . D 4 HOH A 178 678 156 HOH HOH . D 4 HOH A 179 679 180 HOH HOH . D 4 HOH A 180 680 93 HOH HOH . D 4 HOH A 181 681 192 HOH HOH . D 4 HOH A 182 682 137 HOH HOH . D 4 HOH A 183 683 205 HOH HOH . D 4 HOH A 184 684 151 HOH HOH . D 4 HOH A 185 685 220 HOH HOH . D 4 HOH A 186 686 162 HOH HOH . D 4 HOH A 187 687 34 HOH HOH . D 4 HOH A 188 688 146 HOH HOH . D 4 HOH A 189 689 167 HOH HOH . D 4 HOH A 190 690 52 HOH HOH . D 4 HOH A 191 691 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 -115.275 -185.521 304.766 1 112.47 ? PG ATP 402 A 1 HETATM 2 O O1G ATP . . . C 3 -116.142 -185.525 303.531 1 112.76 ? O1G ATP 402 A 1 HETATM 3 O O2G ATP . . . C 3 -113.905 -184.931 304.56 1 112.86 ? O2G ATP 402 A 1 HETATM 4 O O3G ATP . . . C 3 -115.297 -186.816 305.539 1 112.33 ? O3G ATP 402 A 1 HETATM 5 P PB ATP . . . C 3 -117.071 -185.055 306.807 1 110 ? PB ATP 402 A 1 HETATM 6 O O1B ATP . . . C 3 -117.701 -186.299 306.228 1 110.75 ? O1B ATP 402 A 1 HETATM 7 O O2B ATP . . . C 3 -116.401 -185.112 308.161 1 110.2 ? O2B ATP 402 A 1 HETATM 8 O O3B ATP . . . C 3 -116.004 -184.486 305.752 1 111.3 ? O3B ATP 402 A 1 HETATM 9 P PA ATP . . . C 3 -119.696 -184.275 307.274 1 102.5 ? PA ATP 402 A 1 HETATM 10 O O1A ATP . . . C 3 -120.596 -183.754 306.184 1 103.13 ? O1A ATP 402 A 1 HETATM 11 O O2A ATP . . . C 3 -119.735 -185.733 307.664 1 102.86 ? O2A ATP 402 A 1 HETATM 12 O O3A ATP . . . C 3 -118.188 -183.903 306.855 1 106.4 ? O3A ATP 402 A 1 HETATM 13 O O5' ATP . . . C 3 -119.876 -183.395 308.604 1 96.64 ? O5' ATP 402 A 1 HETATM 14 C C5' ATP . . . C 3 -120.876 -182.389 308.703 1 91.49 ? C5' ATP 402 A 1 HETATM 15 C C4' ATP . . . C 3 -120.57 -181.547 309.933 1 86.17 ? C4' ATP 402 A 1 HETATM 16 O O4' ATP . . . C 3 -121.13 -182.15 311.1 1 82.7 ? O4' ATP 402 A 1 HETATM 17 C C3' ATP . . . C 3 -119.071 -181.424 310.163 1 83.69 ? C3' ATP 402 A 1 HETATM 18 O O3' ATP . . . C 3 -118.683 -180.059 309.983 1 83.55 ? O3' ATP 402 A 1 HETATM 19 C C2' ATP . . . C 3 -118.836 -181.906 311.588 1 81.44 ? C2' ATP 402 A 1 HETATM 20 O O2' ATP . . . C 3 -118.011 -181.013 312.346 1 81.43 ? O2' ATP 402 A 1 HETATM 21 C C1' ATP . . . C 3 -120.227 -181.998 312.194 1 78.67 ? C1' ATP 402 A 1 HETATM 22 N N9 ATP . . . C 3 -120.352 -183.142 313.128 1 71.93 ? N9 ATP 402 A 1 HETATM 23 C C8 ATP . . . C 3 -120.293 -184.446 312.809 1 69.42 ? C8 ATP 402 A 1 HETATM 24 N N7 ATP . . . C 3 -120.452 -185.222 313.911 1 67.92 ? N7 ATP 402 A 1 HETATM 25 C C5 ATP . . . C 3 -120.617 -184.402 314.963 1 67.55 ? C5 ATP 402 A 1 HETATM 26 C C6 ATP . . . C 3 -120.837 -184.558 316.419 1 67.45 ? C6 ATP 402 A 1 HETATM 27 N N6 ATP . . . C 3 -120.911 -185.781 316.992 1 66.34 ? N6 ATP 402 A 1 HETATM 28 N N1 ATP . . . C 3 -120.961 -183.435 317.159 1 68.56 ? N1 ATP 402 A 1 HETATM 29 C C2 ATP . . . C 3 -120.888 -182.21 316.607 1 69.01 ? C2 ATP 402 A 1 HETATM 30 N N3 ATP . . . C 3 -120.694 -181.996 315.296 1 69.01 ? N3 ATP 402 A 1 HETATM 31 C C4 ATP . . . C 3 -120.552 -183.033 314.439 1 68.91 ? C4 ATP 402 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #