data_6FVO # _model_server_result.job_id AsLFq6w6Ldo-b9y5vqQbJA _model_server_result.datetime_utc '2024-10-19 12:27:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6FVO # _exptl.entry_id 6FVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 68.64 _cell.angle_beta 88.94 _cell.angle_gamma 62.56 _cell.entry_id 6FVO _cell.length_a 78.488 _cell.length_b 81.064 _cell.length_c 90.015 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,M,N 1 1 C,D,G,H,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C ACE 1 H ACE 1 1_555 E N GLN 2 H GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 E C GLN 2 H GLN 2 1_555 E N ALC 3 H ALC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 E C ALC 3 H ALC 3 1_555 E N ASP 4 H ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 F C ACE 1 I ACE 1 1_555 F N GLN 2 I GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 F C GLN 2 I GLN 2 1_555 F N ALC 3 I ALC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 F C ALC 3 I ALC 3 1_555 F N ASP 4 I ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 G C ACE 1 J ACE 1 1_555 G N GLN 2 J GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 G C GLN 2 J GLN 2 1_555 G N ALC 3 J ALC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 G C ALC 3 J ALC 3 1_555 G N ASP 4 J ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 H C ACE 1 K ACE 1 1_555 H N GLN 2 K GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 H C GLN 2 K GLN 2 1_555 H N ALC 3 K ALC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 H C ALC 3 K ALC 3 1_555 H N ASP 4 K ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FVO _atom_sites.fract_transf_matrix[1][1] 0.012741 _atom_sites.fract_transf_matrix[1][2] -0.006616 _atom_sites.fract_transf_matrix[1][3] 0.002638 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0139 _atom_sites.fract_transf_matrix[2][3] -0.006082 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 CA B 1 501 1 CA CA . J 3 CA B 1 502 3 CA CA . K 3 CA C 1 501 4 CA CA . L 3 CA D 1 501 2 CA CA . M 4 HOH A 1 501 62 HOH HOH . M 4 HOH A 2 502 11 HOH HOH . M 4 HOH A 3 503 67 HOH HOH . M 4 HOH A 4 504 74 HOH HOH . M 4 HOH A 5 505 16 HOH HOH . M 4 HOH A 6 506 54 HOH HOH . M 4 HOH A 7 507 32 HOH HOH . M 4 HOH A 8 508 40 HOH HOH . M 4 HOH A 9 509 57 HOH HOH . M 4 HOH A 10 510 9 HOH HOH . M 4 HOH A 11 511 6 HOH HOH . M 4 HOH A 12 512 43 HOH HOH . M 4 HOH A 13 513 80 HOH HOH . M 4 HOH A 14 514 28 HOH HOH . M 4 HOH A 15 515 73 HOH HOH . M 4 HOH A 16 516 100 HOH HOH . M 4 HOH A 17 517 64 HOH HOH . M 4 HOH A 18 518 63 HOH HOH . M 4 HOH A 19 519 85 HOH HOH . M 4 HOH A 20 520 52 HOH HOH . M 4 HOH A 21 521 99 HOH HOH . M 4 HOH A 22 522 55 HOH HOH . M 4 HOH A 23 523 71 HOH HOH . M 4 HOH A 24 524 39 HOH HOH . N 4 HOH B 1 601 89 HOH HOH . N 4 HOH B 2 602 48 HOH HOH . N 4 HOH B 3 603 58 HOH HOH . N 4 HOH B 4 604 36 HOH HOH . N 4 HOH B 5 605 70 HOH HOH . N 4 HOH B 6 606 19 HOH HOH . N 4 HOH B 7 607 1 HOH HOH . N 4 HOH B 8 608 47 HOH HOH . N 4 HOH B 9 609 30 HOH HOH . N 4 HOH B 10 610 34 HOH HOH . N 4 HOH B 11 611 90 HOH HOH . N 4 HOH B 12 612 101 HOH HOH . N 4 HOH B 13 613 83 HOH HOH . N 4 HOH B 14 614 72 HOH HOH . N 4 HOH B 15 615 105 HOH HOH . N 4 HOH B 16 616 46 HOH HOH . N 4 HOH B 17 617 95 HOH HOH . N 4 HOH B 18 618 53 HOH HOH . N 4 HOH B 19 619 102 HOH HOH . N 4 HOH B 20 620 109 HOH HOH . N 4 HOH B 21 621 110 HOH HOH . N 4 HOH B 22 622 49 HOH HOH . N 4 HOH B 23 623 104 HOH HOH . N 4 HOH B 24 624 107 HOH HOH . N 4 HOH B 25 625 65 HOH HOH . N 4 HOH B 26 626 88 HOH HOH . N 4 HOH B 27 627 103 HOH HOH . N 4 HOH B 28 628 81 HOH HOH . N 4 HOH B 29 629 86 HOH HOH . O 4 HOH C 1 601 24 HOH HOH . O 4 HOH C 2 602 2 HOH HOH . O 4 HOH C 3 603 45 HOH HOH . O 4 HOH C 4 604 3 HOH HOH . O 4 HOH C 5 605 10 HOH HOH . O 4 HOH C 6 606 8 HOH HOH . O 4 HOH C 7 607 75 HOH HOH . O 4 HOH C 8 608 66 HOH HOH . O 4 HOH C 9 609 26 HOH HOH . O 4 HOH C 10 610 69 HOH HOH . O 4 HOH C 11 611 17 HOH HOH . O 4 HOH C 12 612 82 HOH HOH . O 4 HOH C 13 613 93 HOH HOH . O 4 HOH C 14 614 18 HOH HOH . O 4 HOH C 15 615 15 HOH HOH . O 4 HOH C 16 616 92 HOH HOH . O 4 HOH C 17 617 29 HOH HOH . O 4 HOH C 18 618 77 HOH HOH . O 4 HOH C 19 619 59 HOH HOH . O 4 HOH C 20 620 78 HOH HOH . O 4 HOH C 21 621 96 HOH HOH . O 4 HOH C 22 622 97 HOH HOH . O 4 HOH C 23 623 61 HOH HOH . O 4 HOH C 24 624 94 HOH HOH . O 4 HOH C 25 625 56 HOH HOH . P 4 HOH D 1 601 44 HOH HOH . P 4 HOH D 2 602 27 HOH HOH . P 4 HOH D 3 603 33 HOH HOH . P 4 HOH D 4 604 79 HOH HOH . P 4 HOH D 5 605 106 HOH HOH . P 4 HOH D 6 606 37 HOH HOH . P 4 HOH D 7 607 60 HOH HOH . P 4 HOH D 8 608 51 HOH HOH . P 4 HOH D 9 609 50 HOH HOH . P 4 HOH D 10 610 21 HOH HOH . P 4 HOH D 11 611 87 HOH HOH . P 4 HOH D 12 612 108 HOH HOH . P 4 HOH D 13 613 42 HOH HOH . P 4 HOH D 14 614 98 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -18.152 _atom_site.Cartn_y 7.588 _atom_site.Cartn_z -33.205 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.71 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #