data_6FVX # _model_server_result.job_id z51EmPISys-8Zg85UJMHNg _model_server_result.datetime_utc '2024-11-05 01:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BB","auth_seq_id":501}' # _entry.id 6FVX # _exptl.entry_id 6FVX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 34 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FVX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 47-meric _pdbx_struct_assembly.oligomeric_count 47 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 34 VA N N ? 34 XA N N ? 34 ZA N N ? 34 BB N N ? 34 DB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 PA OG1 THR 216 H THR 257 1_555 WA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 VA O2G ATP . H ATP 501 1_555 WA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 VA O2B ATP . H ATP 501 1_555 WA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc4 QA OG1 THR 178 I THR 230 1_555 YA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc5 XA O1G ATP . I ATP 501 1_555 YA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc6 XA O2B ATP . I ATP 501 1_555 YA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc7 RA OG1 THR 186 K THR 220 1_555 AB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc8 ZA O2G ATP . K ATP 501 1_555 AB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc9 ZA O1B ATP . K ATP 501 1_555 AB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc10 SA OG1 THR 181 L THR 229 1_555 CB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc11 BB O2G ATP . L ATP 501 1_555 CB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc12 BB O1B ATP . L ATP 501 1_555 CB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc13 TA OG1 THR 216 M THR 229 1_555 EB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc14 DB O3G ATP . M ATP 501 1_555 EB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc15 DB O1B ATP . M ATP 501 1_555 EB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc16 UA OG1 THR 196 J THR 196 1_555 GB MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc17 FB O3B ADP . J ADP 501 1_555 GB MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6FVX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code VA 34 ATP H 1 501 501 ATP ATP . WA 35 MG H 1 502 502 MG MG . XA 34 ATP I 1 501 501 ATP ATP . YA 35 MG I 1 502 502 MG MG . ZA 34 ATP K 1 501 501 ATP ATP . AB 35 MG K 1 502 502 MG MG . BB 34 ATP L 1 501 501 ATP ATP . CB 35 MG L 1 502 502 MG MG . DB 34 ATP M 1 501 501 ATP ATP . EB 35 MG M 1 502 502 MG MG . FB 36 ADP J 1 501 501 ADP ADP . GB 35 MG J 1 502 503 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . BB 34 166.399 278.797 293.394 1 1 ? PG ATP 501 L 1 HETATM 2 O O1G ATP . . . BB 34 167.198 278.672 292.086 1 1 ? O1G ATP 501 L 1 HETATM 3 O O2G ATP . . . BB 34 165.58 280.112 293.506 1 1 ? O2G ATP 501 L 1 HETATM 4 O O3G ATP . . . BB 34 165.602 277.568 293.709 1 1 ? O3G ATP 501 L 1 HETATM 5 P PB ATP . . . BB 34 167.637 279.961 296.221 1 1 ? PB ATP 501 L 1 HETATM 6 O O1B ATP . . . BB 34 166.666 281.135 295.956 1 1 ? O1B ATP 501 L 1 HETATM 7 O O2B ATP . . . BB 34 169.125 280.148 296.512 1 1 ? O2B ATP 501 L 1 HETATM 8 O O3B ATP . . . BB 34 167.46 279.001 294.749 1 1 ? O3B ATP 501 L 1 HETATM 9 P PA ATP . . . BB 34 165.839 278.035 298.185 1 1 ? PA ATP 501 L 1 HETATM 10 O O1A ATP . . . BB 34 165.051 277.311 297.094 1 1 ? O1A ATP 501 L 1 HETATM 11 O O2A ATP . . . BB 34 165.158 279.019 298.993 1 1 ? O2A ATP 501 L 1 HETATM 12 O O3A ATP . . . BB 34 166.949 278.822 297.329 1 1 ? O3A ATP 501 L 1 HETATM 13 O O5' ATP . . . BB 34 166.567 277.001 299.146 1 1 ? O5' ATP 501 L 1 HETATM 14 C C5' ATP . . . BB 34 166.023 275.646 299.155 1 1 ? C5' ATP 501 L 1 HETATM 15 C C4' ATP . . . BB 34 165.978 275.198 300.631 1 1 ? C4' ATP 501 L 1 HETATM 16 O O4' ATP . . . BB 34 167.242 274.894 301.115 1 1 ? O4' ATP 501 L 1 HETATM 17 C C3' ATP . . . BB 34 165.335 275.921 301.855 1 1 ? C3' ATP 501 L 1 HETATM 18 O O3' ATP . . . BB 34 163.893 275.702 301.858 1 1 ? O3' ATP 501 L 1 HETATM 19 C C2' ATP . . . BB 34 166.06 275.282 303.078 1 1 ? C2' ATP 501 L 1 HETATM 20 O O2' ATP . . . BB 34 165.511 273.994 303.419 1 1 ? O2' ATP 501 L 1 HETATM 21 C C1' ATP . . . BB 34 167.359 275.038 302.534 1 1 ? C1' ATP 501 L 1 HETATM 22 N N9 ATP . . . BB 34 168.24 276.104 303.009 1 1 ? N9 ATP 501 L 1 HETATM 23 C C8 ATP . . . BB 34 168.946 276.952 302.174 1 1 ? C8 ATP 501 L 1 HETATM 24 N N7 ATP . . . BB 34 169.771 277.779 302.737 1 1 ? N7 ATP 501 L 1 HETATM 25 C C5 ATP . . . BB 34 169.585 277.482 304.066 1 1 ? C5 ATP 501 L 1 HETATM 26 C C6 ATP . . . BB 34 170.089 278.131 305.176 1 1 ? C6 ATP 501 L 1 HETATM 27 N N6 ATP . . . BB 34 170.911 279.236 304.953 1 1 ? N6 ATP 501 L 1 HETATM 28 N N1 ATP . . . BB 34 169.761 277.602 306.441 1 1 ? N1 ATP 501 L 1 HETATM 29 C C2 ATP . . . BB 34 169.007 276.497 306.472 1 1 ? C2 ATP 501 L 1 HETATM 30 N N3 ATP . . . BB 34 168.338 275.979 305.431 1 1 ? N3 ATP 501 L 1 HETATM 31 C C4 ATP . . . BB 34 168.658 276.484 304.251 1 1 ? C4 ATP 501 L 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 428 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #