data_6FVX
#
_model_server_result.job_id            oIn20eDS-GOhIp8jH0BSDA 
_model_server_result.datetime_utc      '2024-11-05 01:30:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fvx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FB","auth_seq_id":501}' 
#
_entry.id    6FVX 
#
_exptl.entry_id    6FVX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          36 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6FVX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FVX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    47-meric 
_pdbx_struct_assembly.oligomeric_count      47 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      36 
_struct_asym.id                             FB 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 PA OG1 THR 216 H THR 257 1_555 WA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc2 VA O2G ATP . H ATP 501 1_555 WA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc3 VA O2B ATP . H ATP 501 1_555 WA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc4 QA OG1 THR 178 I THR 230 1_555 YA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc5 XA O1G ATP . I ATP 501 1_555 YA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc6 XA O2B ATP . I ATP 501 1_555 YA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc7 RA OG1 THR 186 K THR 220 1_555 AB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc8 ZA O2G ATP . K ATP 501 1_555 AB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc9 ZA O1B ATP . K ATP 501 1_555 AB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc10 SA OG1 THR 181 L THR 229 1_555 CB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc11 BB O2G ATP . L ATP 501 1_555 CB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc12 BB O1B ATP . L ATP 501 1_555 CB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc13 TA OG1 THR 216 M THR 229 1_555 EB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc14 DB O3G ATP . M ATP 501 1_555 EB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc15 DB O1B ATP . M ATP 501 1_555 EB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc16 UA OG1 THR 196 J THR 196 1_555 GB MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc17 FB O3B ADP . J ADP 501 1_555 GB MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6FVX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
VA 34 ATP H 1 501 501 ATP ATP . 
WA 35 MG H 1 502 502 MG MG . 
XA 34 ATP I 1 501 501 ATP ATP . 
YA 35 MG I 1 502 502 MG MG . 
ZA 34 ATP K 1 501 501 ATP ATP . 
AB 35 MG K 1 502 502 MG MG . 
BB 34 ATP L 1 501 501 ATP ATP . 
CB 35 MG L 1 502 502 MG MG . 
DB 34 ATP M 1 501 501 ATP ATP . 
EB 35 MG M 1 502 502 MG MG . 
FB 36 ADP J 1 501 501 ADP ADP . 
GB 35 MG J 1 502 503 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . FB 36 175.921 311.834 250.081 1 1 ? PB ADP 501 J 1 
HETATM 2 O O1B ADP . . . FB 36 175.153 312.562 248.999 1 1 ? O1B ADP 501 J 1 
HETATM 3 O O2B ADP . . . FB 36 177.166 312.614 250.593 1 1 ? O2B ADP 501 J 1 
HETATM 4 O O3B ADP . . . FB 36 176.276 310.406 249.795 1 1 ? O3B ADP 501 J 1 
HETATM 5 P PA ADP . . . FB 36 174.631 311.812 253.191 1 1 ? PA ADP 501 J 1 
HETATM 6 O O1A ADP . . . FB 36 173.426 311.019 253.43 1 1 ? O1A ADP 501 J 1 
HETATM 7 O O2A ADP . . . FB 36 175.902 311.507 253.879 1 1 ? O2A ADP 501 J 1 
HETATM 8 O O3A ADP . . . FB 36 174.931 311.809 251.531 1 1 ? O3A ADP 501 J 1 
HETATM 9 O O5' ADP . . . FB 36 174.347 313.381 253.302 1 1 ? O5' ADP 501 J 1 
HETATM 10 C C5' ADP . . . FB 36 173.21 313.768 254.047 1 1 ? C5' ADP 501 J 1 
HETATM 11 C C4' ADP . . . FB 36 172.962 315.259 253.946 1 1 ? C4' ADP 501 J 1 
HETATM 12 O O4' ADP . . . FB 36 174.268 315.857 254.249 1 1 ? O4' ADP 501 J 1 
HETATM 13 C C3' ADP . . . FB 36 172.698 315.681 252.504 1 1 ? C3' ADP 501 J 1 
HETATM 14 O O3' ADP . . . FB 36 171.259 315.712 252.27 1 1 ? O3' ADP 501 J 1 
HETATM 15 C C2' ADP . . . FB 36 173.275 317.049 252.467 1 1 ? C2' ADP 501 J 1 
HETATM 16 O O2' ADP . . . FB 36 172.405 318.057 252.985 1 1 ? O2' ADP 501 J 1 
HETATM 17 C C1' ADP . . . FB 36 174.525 316.858 253.299 1 1 ? C1' ADP 501 J 1 
HETATM 18 N N9 ADP . . . FB 36 175.68 316.592 252.353 1 1 ? N9 ADP 501 J 1 
HETATM 19 C C8 ADP . . . FB 36 176.454 315.497 252.029 1 1 ? C8 ADP 501 J 1 
HETATM 20 N N7 ADP . . . FB 36 177.353 315.704 251.089 1 1 ? N7 ADP 501 J 1 
HETATM 21 C C5 ADP . . . FB 36 177.204 317.053 250.755 1 1 ? C5 ADP 501 J 1 
HETATM 22 C C6 ADP . . . FB 36 177.808 317.892 249.747 1 1 ? C6 ADP 501 J 1 
HETATM 23 N N6 ADP . . . FB 36 178.817 317.448 248.909 1 1 ? N6 ADP 501 J 1 
HETATM 24 N N1 ADP . . . FB 36 177.224 319.153 249.572 1 1 ? N1 ADP 501 J 1 
HETATM 25 C C2 ADP . . . FB 36 176.208 319.517 250.403 1 1 ? C2 ADP 501 J 1 
HETATM 26 N N3 ADP . . . FB 36 175.603 318.894 251.399 1 1 ? N3 ADP 501 J 1 
HETATM 27 C C4 ADP . . . FB 36 176.081 317.593 251.501 1 1 ? C4 ADP 501 J 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    124 
_model_server_stats.query_time_ms           211 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#