data_6FW8 # _model_server_result.job_id 6qFVwedIAbtCMIYPgTS84w _model_server_result.datetime_utc '2024-12-01 08:53:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6FW8 # _exptl.entry_id 6FW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.252 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methyl-L-tryptophan _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FW8 _cell.length_a 151.13 _cell.length_b 174.088 _cell.length_c 93.922 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 239 B ALA 240 1_555 E MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc2 C O1P FAD . B FAD 501 1_555 E MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc3 B O ALA 239 A ALA 240 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc4 F O1P FAD . A FAD 501 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? # _chem_comp.formula 'C12 H14 N2 O2' _chem_comp.formula_weight 218.252 _chem_comp.id D0Q _chem_comp.mon_nstd_flag . _chem_comp.name 5-methyl-L-tryptophan _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C D0Q doub 83 n n C10 C9 D0Q sing 84 n n C10 CA D0Q sing 85 n n C8 C9 D0Q doub 86 n y C8 N1 D0Q sing 87 n y C9 C4 D0Q sing 88 n y C CA D0Q sing 89 n n C OXT D0Q sing 90 n n N CA D0Q sing 91 n n N1 C5 D0Q sing 92 n y C4 C5 D0Q doub 93 n y C4 C3 D0Q sing 94 n y C5 C6 D0Q sing 95 n y C3 C2 D0Q doub 96 n y C6 C7 D0Q doub 97 n y C2 C7 D0Q sing 98 n y C2 C1 D0Q sing 99 n n C6 H61 D0Q sing 100 n n CA HA D0Q sing 101 n n C7 H71 D0Q sing 102 n n C8 H81 D0Q sing 103 n n C10 H102 D0Q sing 104 n n C10 H101 D0Q sing 105 n n N1 H1 D0Q sing 106 n n N H2 D0Q sing 107 n n N H D0Q sing 108 n n C3 H31 D0Q sing 109 n n C1 H11 D0Q sing 110 n n C1 H13 D0Q sing 111 n n C1 H12 D0Q sing 112 n n OXT HXT D0Q sing 113 n n # _atom_sites.entry_id 6FW8 _atom_sites.fract_transf_matrix[1][1] 0.006617 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD B 1 501 1 FAD FAD . D 3 D0Q B 1 502 1 D0Q LIG . E 4 MG B 1 503 2 MG MG . F 2 FAD A 1 501 2 FAD FAD . G 3 D0Q A 1 502 2 D0Q LIG . H 4 MG A 1 503 1 MG MG . I 5 HOH B 1 601 39 HOH HOH . I 5 HOH B 2 602 63 HOH HOH . I 5 HOH B 3 603 80 HOH HOH . I 5 HOH B 4 604 9 HOH HOH . I 5 HOH B 5 605 24 HOH HOH . I 5 HOH B 6 606 18 HOH HOH . I 5 HOH B 7 607 49 HOH HOH . I 5 HOH B 8 608 5 HOH HOH . I 5 HOH B 9 609 1 HOH HOH . I 5 HOH B 10 610 41 HOH HOH . I 5 HOH B 11 611 46 HOH HOH . I 5 HOH B 12 612 12 HOH HOH . I 5 HOH B 13 613 29 HOH HOH . I 5 HOH B 14 614 31 HOH HOH . I 5 HOH B 15 615 97 HOH HOH . I 5 HOH B 16 616 30 HOH HOH . I 5 HOH B 17 617 23 HOH HOH . I 5 HOH B 18 618 13 HOH HOH . I 5 HOH B 19 619 28 HOH HOH . I 5 HOH B 20 620 69 HOH HOH . I 5 HOH B 21 621 54 HOH HOH . I 5 HOH B 22 622 76 HOH HOH . I 5 HOH B 23 623 6 HOH HOH . I 5 HOH B 24 624 43 HOH HOH . I 5 HOH B 25 625 27 HOH HOH . I 5 HOH B 26 626 45 HOH HOH . I 5 HOH B 27 627 34 HOH HOH . I 5 HOH B 28 628 52 HOH HOH . I 5 HOH B 29 629 48 HOH HOH . I 5 HOH B 30 630 38 HOH HOH . I 5 HOH B 31 631 58 HOH HOH . I 5 HOH B 32 632 50 HOH HOH . I 5 HOH B 33 633 98 HOH HOH . I 5 HOH B 34 634 53 HOH HOH . I 5 HOH B 35 635 81 HOH HOH . I 5 HOH B 36 636 51 HOH HOH . I 5 HOH B 37 637 72 HOH HOH . I 5 HOH B 38 638 65 HOH HOH . I 5 HOH B 39 639 77 HOH HOH . J 5 HOH A 1 601 37 HOH HOH . J 5 HOH A 2 602 90 HOH HOH . J 5 HOH A 3 603 84 HOH HOH . J 5 HOH A 4 604 91 HOH HOH . J 5 HOH A 5 605 71 HOH HOH . J 5 HOH A 6 606 17 HOH HOH . J 5 HOH A 7 607 66 HOH HOH . J 5 HOH A 8 608 59 HOH HOH . J 5 HOH A 9 609 87 HOH HOH . J 5 HOH A 10 610 3 HOH HOH . J 5 HOH A 11 611 92 HOH HOH . J 5 HOH A 12 612 21 HOH HOH . J 5 HOH A 13 613 94 HOH HOH . J 5 HOH A 14 614 93 HOH HOH . J 5 HOH A 15 615 26 HOH HOH . J 5 HOH A 16 616 67 HOH HOH . J 5 HOH A 17 617 78 HOH HOH . J 5 HOH A 18 618 64 HOH HOH . J 5 HOH A 19 619 33 HOH HOH . J 5 HOH A 20 620 85 HOH HOH . J 5 HOH A 21 621 75 HOH HOH . J 5 HOH A 22 622 2 HOH HOH . J 5 HOH A 23 623 10 HOH HOH . J 5 HOH A 24 624 8 HOH HOH . J 5 HOH A 25 625 19 HOH HOH . J 5 HOH A 26 626 62 HOH HOH . J 5 HOH A 27 627 99 HOH HOH . J 5 HOH A 28 628 44 HOH HOH . J 5 HOH A 29 629 7 HOH HOH . J 5 HOH A 30 630 32 HOH HOH . J 5 HOH A 31 631 47 HOH HOH . J 5 HOH A 32 632 40 HOH HOH . J 5 HOH A 33 633 42 HOH HOH . J 5 HOH A 34 634 60 HOH HOH . J 5 HOH A 35 635 74 HOH HOH . J 5 HOH A 36 636 11 HOH HOH . J 5 HOH A 37 637 25 HOH HOH . J 5 HOH A 38 638 82 HOH HOH . J 5 HOH A 39 639 4 HOH HOH . J 5 HOH A 40 640 15 HOH HOH . J 5 HOH A 41 641 35 HOH HOH . J 5 HOH A 42 642 22 HOH HOH . J 5 HOH A 43 643 68 HOH HOH . J 5 HOH A 44 644 55 HOH HOH . J 5 HOH A 45 645 83 HOH HOH . J 5 HOH A 46 646 16 HOH HOH . J 5 HOH A 47 647 36 HOH HOH . J 5 HOH A 48 648 79 HOH HOH . J 5 HOH A 49 649 61 HOH HOH . J 5 HOH A 50 650 57 HOH HOH . J 5 HOH A 51 651 86 HOH HOH . J 5 HOH A 52 652 88 HOH HOH . J 5 HOH A 53 653 95 HOH HOH . J 5 HOH A 54 654 70 HOH HOH . J 5 HOH A 55 655 56 HOH HOH . J 5 HOH A 56 656 96 HOH HOH . J 5 HOH A 57 657 89 HOH HOH . J 5 HOH A 58 658 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 D0Q . . . D 3 48.497 30.083 -16.92 1 86.07 ? C4 D0Q 502 B 1 HETATM 2 C C5 D0Q . . . D 3 49.082 29.133 -17.718 1 84.94 ? C5 D0Q 502 B 1 HETATM 3 C C6 D0Q . . . D 3 50.078 28.306 -17.203 1 80.91 ? C6 D0Q 502 B 1 HETATM 4 C CA D0Q . . . D 3 47.336 33.141 -16.786 1 78.17 ? CA D0Q 502 B 1 HETATM 5 C C7 D0Q . . . D 3 50.47 28.442 -15.888 1 84.89 ? C7 D0Q 502 B 1 HETATM 6 C C8 D0Q . . . D 3 47.639 30.135 -18.954 1 74.19 ? C8 D0Q 502 B 1 HETATM 7 C C9 D0Q . . . D 3 47.558 30.751 -17.716 1 83.64 ? C9 D0Q 502 B 1 HETATM 8 C C10 D0Q . . . D 3 46.62 31.894 -17.307 1 80.11 ? C10 D0Q 502 B 1 HETATM 9 C C D0Q . . . D 3 46.383 34.246 -16.395 1 69.36 ? C D0Q 502 B 1 HETATM 10 N N1 D0Q . . . D 3 48.543 29.186 -18.928 1 73.32 ? N1 D0Q 502 B 1 HETATM 11 N N D0Q . . . D 3 48.148 32.841 -15.633 1 71.27 ? N D0Q 502 B 1 HETATM 12 C C3 D0Q . . . D 3 48.895 30.217 -15.591 1 79.36 ? C3 D0Q 502 B 1 HETATM 13 C C1 D0Q . . . D 3 50.323 29.543 -13.624 1 67.43 ? C1 D0Q 502 B 1 HETATM 14 C C2 D0Q . . . D 3 49.88 29.398 -15.077 1 86.92 ? C2 D0Q 502 B 1 HETATM 15 O O D0Q . . . D 3 46.045 35.102 -17.233 1 76.5 ? O D0Q 502 B 1 HETATM 16 O OXT D0Q . . . D 3 45.931 34.323 -15.238 1 71.08 ? OXT D0Q 502 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #