data_6FWF # _model_server_result.job_id dwdgYccs5Rn2-sEGiMTzSw _model_server_result.datetime_utc '2025-01-17 04:06:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6FWF # _exptl.entry_id 6FWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FWF _cell.length_a 93.682 _cell.length_b 123.096 _cell.length_c 130.845 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 76 A GLY 76 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc2 A OH TYR 78 A TYR 78 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A NE2 HIS 335 A HIS 335 1_555 C FE HEM . A HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc4 A OE1 GLU 411 A GLU 411 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc5 A OE2 GLU 411 A GLU 411 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc6 A NE2 HIS 490 A HIS 490 1_555 E FE FE . A FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc7 A NE2 HIS 541 A HIS 541 1_555 E FE FE . A FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc8 A NE2 HIS 542 A HIS 542 1_555 E FE FE . A FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc9 A NE2 HIS 633 A HIS 633 1_555 B FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc10 A NE2 HIS 635 A HIS 635 1_555 C FE HEM . A HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc11 B O1A HEM . A HEM 1001 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc12 B O2A HEM . A HEM 1001 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 C O1D HEM . A HEM 1002 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6FWF _atom_sites.fract_transf_matrix[1][1] 0.010674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 1001 1001 HEM HEM . C 2 HEM A 1 1002 1002 HEM HEM . D 3 CA A 1 1003 1003 CA CA . E 4 FE A 1 1004 1 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 72.691 33.683 91.953 1 293.23 ? CHA HEM 1001 A 1 HETATM 2 C CHB HEM . . . B 2 70.806 37.727 93.729 1 271.6 ? CHB HEM 1001 A 1 HETATM 3 C CHC HEM . . . B 2 74.98 40.04 92.769 1 285.32 ? CHC HEM 1001 A 1 HETATM 4 C CHD HEM . . . B 2 76.952 35.939 91.316 1 294.02 ? CHD HEM 1001 A 1 HETATM 5 C C1A HEM . . . B 2 71.815 34.576 92.508 1 266.98 ? C1A HEM 1001 A 1 HETATM 6 C C2A HEM . . . B 2 70.581 34.214 93.112 1 267.57 ? C2A HEM 1001 A 1 HETATM 7 C C3A HEM . . . B 2 70.061 35.358 93.633 1 241.26 ? C3A HEM 1001 A 1 HETATM 8 C C4A HEM . . . B 2 70.956 36.413 93.345 1 250.33 ? C4A HEM 1001 A 1 HETATM 9 C CMA HEM . . . B 2 68.734 35.447 94.345 1 233.95 ? CMA HEM 1001 A 1 HETATM 10 C CAA HEM . . . B 2 69.957 32.817 93.204 1 294.7 ? CAA HEM 1001 A 1 HETATM 11 C CBA HEM . . . B 2 69.362 32.274 91.897 1 288.39 ? CBA HEM 1001 A 1 HETATM 12 C CGA HEM . . . B 2 68.823 30.841 91.966 1 270.82 ? CGA HEM 1001 A 1 HETATM 13 O O1A HEM . . . B 2 68.029 30.415 91.091 1 232.4 ? O1A HEM 1001 A 1 HETATM 14 O O2A HEM . . . B 2 69.132 30.034 92.877 1 241.96 ? O2A HEM 1001 A 1 HETATM 15 C C1B HEM . . . B 2 71.812 38.703 93.61 1 279.3 ? C1B HEM 1001 A 1 HETATM 16 C C2B HEM . . . B 2 71.639 40.054 94.035 1 277.92 ? C2B HEM 1001 A 1 HETATM 17 C C3B HEM . . . B 2 72.794 40.741 93.754 1 273.98 ? C3B HEM 1001 A 1 HETATM 18 C C4B HEM . . . B 2 73.688 39.722 93.165 1 279.24 ? C4B HEM 1001 A 1 HETATM 19 C CMB HEM . . . B 2 70.379 40.617 94.626 1 273.3 ? CMB HEM 1001 A 1 HETATM 20 C CAB HEM . . . B 2 73.216 42.139 94.048 1 263.89 ? CAB HEM 1001 A 1 HETATM 21 C CBB HEM . . . B 2 72.662 42.897 94.981 1 256.69 ? CBB HEM 1001 A 1 HETATM 22 C C1C HEM . . . B 2 75.907 39.135 92.313 1 284.34 ? C1C HEM 1001 A 1 HETATM 23 C C2C HEM . . . B 2 77.272 39.423 92.094 1 298.64 ? C2C HEM 1001 A 1 HETATM 24 C C3C HEM . . . B 2 77.853 38.241 91.643 1 298.58 ? C3C HEM 1001 A 1 HETATM 25 C C4C HEM . . . B 2 76.803 37.252 91.656 1 289.63 ? C4C HEM 1001 A 1 HETATM 26 C CMC HEM . . . B 2 77.939 40.783 92.245 1 308.04 ? CMC HEM 1001 A 1 HETATM 27 C CAC HEM . . . B 2 79.285 37.98 91.319 1 302.33 ? CAC HEM 1001 A 1 HETATM 28 C CBC HEM . . . B 2 80.318 38.751 91.653 1 302 ? CBC HEM 1001 A 1 HETATM 29 C C1D HEM . . . B 2 75.917 35.002 91.394 1 292.01 ? C1D HEM 1001 A 1 HETATM 30 C C2D HEM . . . B 2 76.145 33.606 90.993 1 294.93 ? C2D HEM 1001 A 1 HETATM 31 C C3D HEM . . . B 2 74.967 32.953 91.183 1 304.69 ? C3D HEM 1001 A 1 HETATM 32 C C4D HEM . . . B 2 74.023 33.986 91.666 1 297.16 ? C4D HEM 1001 A 1 HETATM 33 C CMD HEM . . . B 2 77.472 33.088 90.49 1 289.93 ? CMD HEM 1001 A 1 HETATM 34 C CAD HEM . . . B 2 74.653 31.492 90.889 1 309.75 ? CAD HEM 1001 A 1 HETATM 35 C CBD HEM . . . B 2 74.114 30.617 92.047 1 316.94 ? CBD HEM 1001 A 1 HETATM 36 C CGD HEM . . . B 2 73.122 29.557 91.591 1 315.68 ? CGD HEM 1001 A 1 HETATM 37 O O1D HEM . . . B 2 72.783 28.628 92.363 1 325.94 ? O1D HEM 1001 A 1 HETATM 38 O O2D HEM . . . B 2 72.624 29.568 90.438 1 296.3 ? O2D HEM 1001 A 1 HETATM 39 N NA HEM . . . B 2 72.043 35.919 92.676 1 252.28 ? NA HEM 1001 A 1 HETATM 40 N NB HEM . . . B 2 73.041 38.553 93.108 1 276.06 ? NB HEM 1001 A 1 HETATM 41 N NC HEM . . . B 2 75.621 37.829 92.037 1 274.62 ? NC HEM 1001 A 1 HETATM 42 N ND HEM . . . B 2 74.644 35.171 91.783 1 284.71 ? ND HEM 1001 A 1 HETATM 43 FE FE HEM . . . B 2 73.837 36.752 92.369 1 248.68 ? FE HEM 1001 A 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #