data_6FWF # _model_server_result.job_id Gk63ROCfMPOa9Qv1wXIRyA _model_server_result.datetime_utc '2024-12-26 20:17:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 6FWF # _exptl.entry_id 6FWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FWF _cell.length_a 93.682 _cell.length_b 123.096 _cell.length_c 130.845 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 76 A GLY 76 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc2 A OH TYR 78 A TYR 78 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A NE2 HIS 335 A HIS 335 1_555 C FE HEM . A HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc4 A OE1 GLU 411 A GLU 411 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc5 A OE2 GLU 411 A GLU 411 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc6 A NE2 HIS 490 A HIS 490 1_555 E FE FE . A FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc7 A NE2 HIS 541 A HIS 541 1_555 E FE FE . A FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc8 A NE2 HIS 542 A HIS 542 1_555 E FE FE . A FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc9 A NE2 HIS 633 A HIS 633 1_555 B FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc10 A NE2 HIS 635 A HIS 635 1_555 C FE HEM . A HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc11 B O1A HEM . A HEM 1001 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc12 B O2A HEM . A HEM 1001 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 C O1D HEM . A HEM 1002 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6FWF _atom_sites.fract_transf_matrix[1][1] 0.010674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 1001 1001 HEM HEM . C 2 HEM A 1 1002 1002 HEM HEM . D 3 CA A 1 1003 1003 CA CA . E 4 FE A 1 1004 1 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 64.502 30.221 100.523 1 216.12 ? CHA HEM 1002 A 1 HETATM 2 C CHB HEM . . . C 2 63.797 30.474 105.282 1 196.58 ? CHB HEM 1002 A 1 HETATM 3 C CHC HEM . . . C 2 63.513 35.276 105.04 1 214.77 ? CHC HEM 1002 A 1 HETATM 4 C CHD HEM . . . C 2 64.983 35.124 100.414 1 221.11 ? CHD HEM 1002 A 1 HETATM 5 C C1A HEM . . . C 2 64.304 29.866 101.848 1 216.98 ? C1A HEM 1002 A 1 HETATM 6 C C2A HEM . . . C 2 64.354 28.545 102.39 1 215.29 ? C2A HEM 1002 A 1 HETATM 7 C C3A HEM . . . C 2 64.144 28.638 103.725 1 201.95 ? C3A HEM 1002 A 1 HETATM 8 C C4A HEM . . . C 2 63.997 30 104.025 1 201.99 ? C4A HEM 1002 A 1 HETATM 9 C CMA HEM . . . C 2 64.108 27.471 104.689 1 195.4 ? CMA HEM 1002 A 1 HETATM 10 C CAA HEM . . . C 2 64.541 27.212 101.693 1 231.47 ? CAA HEM 1002 A 1 HETATM 11 C CBA HEM . . . C 2 65.905 27.016 101.016 1 252.57 ? CBA HEM 1002 A 1 HETATM 12 C CGA HEM . . . C 2 65.873 25.706 100.256 1 270.51 ? CGA HEM 1002 A 1 HETATM 13 O O1A HEM . . . C 2 65.931 24.614 100.863 1 295.83 ? O1A HEM 1002 A 1 HETATM 14 O O2A HEM . . . C 2 65.768 25.707 99.007 1 262.15 ? O2A HEM 1002 A 1 HETATM 15 C C1B HEM . . . C 2 63.648 31.811 105.584 1 198.8 ? C1B HEM 1002 A 1 HETATM 16 C C2B HEM . . . C 2 63.321 32.221 106.899 1 215.72 ? C2B HEM 1002 A 1 HETATM 17 C C3B HEM . . . C 2 63.22 33.576 106.873 1 221.75 ? C3B HEM 1002 A 1 HETATM 18 C C4B HEM . . . C 2 63.496 33.956 105.463 1 210.13 ? C4B HEM 1002 A 1 HETATM 19 C CMB HEM . . . C 2 63.124 31.35 108.114 1 226.66 ? CMB HEM 1002 A 1 HETATM 20 C CAB HEM . . . C 2 62.922 34.521 107.981 1 233.47 ? CAB HEM 1002 A 1 HETATM 21 C CBB HEM . . . C 2 62.739 34.251 109.278 1 230.72 ? CBB HEM 1002 A 1 HETATM 22 C C1C HEM . . . C 2 63.908 35.69 103.777 1 226.5 ? C1C HEM 1002 A 1 HETATM 23 C C2C HEM . . . C 2 63.994 37.03 103.355 1 232.39 ? C2C HEM 1002 A 1 HETATM 24 C C3C HEM . . . C 2 64.425 37.005 102.016 1 231.76 ? C3C HEM 1002 A 1 HETATM 25 C C4C HEM . . . C 2 64.601 35.621 101.656 1 229.93 ? C4C HEM 1002 A 1 HETATM 26 C CMC HEM . . . C 2 63.665 38.233 104.222 1 227.86 ? CMC HEM 1002 A 1 HETATM 27 C CAC HEM . . . C 2 64.646 38.133 101.069 1 222.49 ? CAC HEM 1002 A 1 HETATM 28 C CBC HEM . . . C 2 64.356 39.418 101.283 1 219.35 ? CBC HEM 1002 A 1 HETATM 29 C C1D HEM . . . C 2 64.968 33.747 100.08 1 213.68 ? C1D HEM 1002 A 1 HETATM 30 C C2D HEM . . . C 2 65.204 33.273 98.715 1 209.42 ? C2D HEM 1002 A 1 HETATM 31 C C3D HEM . . . C 2 65.088 31.932 98.738 1 197.19 ? C3D HEM 1002 A 1 HETATM 32 C C4D HEM . . . C 2 64.71 31.554 100.11 1 207.37 ? C4D HEM 1002 A 1 HETATM 33 C CMD HEM . . . C 2 65.547 34.142 97.53 1 224.14 ? CMD HEM 1002 A 1 HETATM 34 C CAD HEM . . . C 2 65.232 31.014 97.553 1 189.36 ? CAD HEM 1002 A 1 HETATM 35 C CBD HEM . . . C 2 66.598 30.9 96.874 1 178.09 ? CBD HEM 1002 A 1 HETATM 36 C CGD HEM . . . C 2 66.368 30.12 95.598 1 165.87 ? CGD HEM 1002 A 1 HETATM 37 O O1D HEM . . . C 2 67.328 29.857 94.834 1 165.01 ? O1D HEM 1002 A 1 HETATM 38 O O2D HEM . . . C 2 65.209 29.725 95.31 1 143.54 ? O2D HEM 1002 A 1 HETATM 39 N NA HEM . . . C 2 64.091 30.756 102.885 1 213.4 ? NA HEM 1002 A 1 HETATM 40 N NB HEM . . . C 2 63.739 32.85 104.754 1 201.18 ? NB HEM 1002 A 1 HETATM 41 N NC HEM . . . C 2 64.22 34.857 102.734 1 229.44 ? NC HEM 1002 A 1 HETATM 42 N ND HEM . . . C 2 64.67 32.68 100.861 1 214.28 ? ND HEM 1002 A 1 HETATM 43 FE FE HEM . . . C 2 64.214 32.747 102.688 1 219.78 ? FE HEM 1002 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #