data_6FWQ # _model_server_result.job_id '_Bne6l9CkVmX3Q8BcYXNMA' _model_server_result.datetime_utc '2024-10-18 10:25:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fwq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 6FWQ # _exptl.entry_id 6FWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FWQ _cell.length_a 108.651 _cell.length_b 108.651 _cell.length_c 68.813 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 MAN MAN C1 O1 . O3 HO3 . sing 2 ? 3 2 1 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B MAN 1 B 1 MAN A 402 MAN 2 n B MAN 2 B 2 MAN A 401 MAN 3 n C MAN 1 C 1 MAN A 404 MAN 3 n C MAN 2 C 2 MAN A 403 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3 MAN . B MAN 1 1_555 B C1 MAN . B MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 C O2 MAN . C MAN 1 1_555 C C1 MAN . C MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A O TYR 44 A TYR 39 1_555 D NA NA . A NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc2 A OD1 ASP 45 A ASP 40 1_555 D NA NA . A NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 A OH TYR 189 A TYR 184 1_555 D NA NA . A NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 D NA NA . A NA 400 1_555 E O HOH . A HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FWQ _atom_sites.fract_transf_matrix[1][1] 0.009204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 400 400 NA NA . E 5 HOH A 1 501 575 HOH HOH . E 5 HOH A 2 502 656 HOH HOH . E 5 HOH A 3 503 552 HOH HOH . E 5 HOH A 4 504 574 HOH HOH . E 5 HOH A 5 505 655 HOH HOH . E 5 HOH A 6 506 591 HOH HOH . E 5 HOH A 7 507 558 HOH HOH . E 5 HOH A 8 508 582 HOH HOH . E 5 HOH A 9 509 599 HOH HOH . E 5 HOH A 10 510 532 HOH HOH . E 5 HOH A 11 511 634 HOH HOH . E 5 HOH A 12 512 534 HOH HOH . E 5 HOH A 13 513 541 HOH HOH . E 5 HOH A 14 514 572 HOH HOH . E 5 HOH A 15 515 613 HOH HOH . E 5 HOH A 16 516 618 HOH HOH . E 5 HOH A 17 517 577 HOH HOH . E 5 HOH A 18 518 610 HOH HOH . E 5 HOH A 19 519 644 HOH HOH . E 5 HOH A 20 520 545 HOH HOH . E 5 HOH A 21 521 508 HOH HOH . E 5 HOH A 22 522 559 HOH HOH . E 5 HOH A 23 523 629 HOH HOH . E 5 HOH A 24 524 524 HOH HOH . E 5 HOH A 25 525 659 HOH HOH . E 5 HOH A 26 526 583 HOH HOH . E 5 HOH A 27 527 543 HOH HOH . E 5 HOH A 28 528 510 HOH HOH . E 5 HOH A 29 529 511 HOH HOH . E 5 HOH A 30 530 586 HOH HOH . E 5 HOH A 31 531 562 HOH HOH . E 5 HOH A 32 532 571 HOH HOH . E 5 HOH A 33 533 540 HOH HOH . E 5 HOH A 34 534 539 HOH HOH . E 5 HOH A 35 535 612 HOH HOH . E 5 HOH A 36 536 573 HOH HOH . E 5 HOH A 37 537 550 HOH HOH . E 5 HOH A 38 538 611 HOH HOH . E 5 HOH A 39 539 516 HOH HOH . E 5 HOH A 40 540 579 HOH HOH . E 5 HOH A 41 541 564 HOH HOH . E 5 HOH A 42 542 643 HOH HOH . E 5 HOH A 43 543 605 HOH HOH . E 5 HOH A 44 544 646 HOH HOH . E 5 HOH A 45 545 554 HOH HOH . E 5 HOH A 46 546 501 HOH HOH . E 5 HOH A 47 547 639 HOH HOH . E 5 HOH A 48 548 503 HOH HOH . E 5 HOH A 49 549 504 HOH HOH . E 5 HOH A 50 550 604 HOH HOH . E 5 HOH A 51 551 514 HOH HOH . E 5 HOH A 52 552 620 HOH HOH . E 5 HOH A 53 553 551 HOH HOH . E 5 HOH A 54 554 578 HOH HOH . E 5 HOH A 55 555 544 HOH HOH . E 5 HOH A 56 556 597 HOH HOH . E 5 HOH A 57 557 518 HOH HOH . E 5 HOH A 58 558 653 HOH HOH . E 5 HOH A 59 559 566 HOH HOH . E 5 HOH A 60 560 531 HOH HOH . E 5 HOH A 61 561 538 HOH HOH . E 5 HOH A 62 562 530 HOH HOH . E 5 HOH A 63 563 526 HOH HOH . E 5 HOH A 64 564 617 HOH HOH . E 5 HOH A 65 565 606 HOH HOH . E 5 HOH A 66 566 658 HOH HOH . E 5 HOH A 67 567 560 HOH HOH . E 5 HOH A 68 568 607 HOH HOH . E 5 HOH A 69 569 641 HOH HOH . E 5 HOH A 70 570 525 HOH HOH . E 5 HOH A 71 571 649 HOH HOH . E 5 HOH A 72 572 590 HOH HOH . E 5 HOH A 73 573 522 HOH HOH . E 5 HOH A 74 574 565 HOH HOH . E 5 HOH A 75 575 528 HOH HOH . E 5 HOH A 76 576 515 HOH HOH . E 5 HOH A 77 577 549 HOH HOH . E 5 HOH A 78 578 645 HOH HOH . E 5 HOH A 79 579 654 HOH HOH . E 5 HOH A 80 580 517 HOH HOH . E 5 HOH A 81 581 600 HOH HOH . E 5 HOH A 82 582 555 HOH HOH . E 5 HOH A 83 583 596 HOH HOH . E 5 HOH A 84 584 553 HOH HOH . E 5 HOH A 85 585 506 HOH HOH . E 5 HOH A 86 586 621 HOH HOH . E 5 HOH A 87 587 601 HOH HOH . E 5 HOH A 88 588 625 HOH HOH . E 5 HOH A 89 589 619 HOH HOH . E 5 HOH A 90 590 507 HOH HOH . E 5 HOH A 91 591 502 HOH HOH . E 5 HOH A 92 592 513 HOH HOH . E 5 HOH A 93 593 593 HOH HOH . E 5 HOH A 94 594 609 HOH HOH . E 5 HOH A 95 595 628 HOH HOH . E 5 HOH A 96 596 602 HOH HOH . E 5 HOH A 97 597 622 HOH HOH . E 5 HOH A 98 598 616 HOH HOH . E 5 HOH A 99 599 521 HOH HOH . E 5 HOH A 100 600 594 HOH HOH . E 5 HOH A 101 601 598 HOH HOH . E 5 HOH A 102 602 580 HOH HOH . E 5 HOH A 103 603 642 HOH HOH . E 5 HOH A 104 604 581 HOH HOH . E 5 HOH A 105 605 542 HOH HOH . E 5 HOH A 106 606 624 HOH HOH . E 5 HOH A 107 607 535 HOH HOH . E 5 HOH A 108 608 547 HOH HOH . E 5 HOH A 109 609 500 HOH HOH . E 5 HOH A 110 610 529 HOH HOH . E 5 HOH A 111 611 533 HOH HOH . E 5 HOH A 112 612 651 HOH HOH . E 5 HOH A 113 613 638 HOH HOH . E 5 HOH A 114 614 546 HOH HOH . E 5 HOH A 115 615 640 HOH HOH . E 5 HOH A 116 616 633 HOH HOH . E 5 HOH A 117 617 523 HOH HOH . E 5 HOH A 118 618 537 HOH HOH . E 5 HOH A 119 619 652 HOH HOH . E 5 HOH A 120 620 505 HOH HOH . E 5 HOH A 121 621 588 HOH HOH . E 5 HOH A 122 622 561 HOH HOH . E 5 HOH A 123 623 592 HOH HOH . E 5 HOH A 124 624 567 HOH HOH . E 5 HOH A 125 625 631 HOH HOH . E 5 HOH A 126 626 527 HOH HOH . E 5 HOH A 127 627 623 HOH HOH . E 5 HOH A 128 628 637 HOH HOH . E 5 HOH A 129 629 548 HOH HOH . E 5 HOH A 130 630 614 HOH HOH . E 5 HOH A 131 631 585 HOH HOH . E 5 HOH A 132 632 536 HOH HOH . E 5 HOH A 133 633 650 HOH HOH . E 5 HOH A 134 634 556 HOH HOH . E 5 HOH A 135 635 636 HOH HOH . E 5 HOH A 136 636 520 HOH HOH . E 5 HOH A 137 637 568 HOH HOH . E 5 HOH A 138 638 647 HOH HOH . E 5 HOH A 139 639 648 HOH HOH . E 5 HOH A 140 640 584 HOH HOH . E 5 HOH A 141 641 595 HOH HOH . E 5 HOH A 142 642 630 HOH HOH . E 5 HOH A 143 643 587 HOH HOH . E 5 HOH A 144 644 608 HOH HOH . E 5 HOH A 145 645 657 HOH HOH . E 5 HOH A 146 646 615 HOH HOH . E 5 HOH A 147 647 509 HOH HOH . E 5 HOH A 148 648 632 HOH HOH . E 5 HOH A 149 649 519 HOH HOH . E 5 HOH A 150 650 512 HOH HOH . E 5 HOH A 151 651 627 HOH HOH . E 5 HOH A 152 652 570 HOH HOH . E 5 HOH A 153 653 569 HOH HOH . E 5 HOH A 154 654 563 HOH HOH . E 5 HOH A 155 655 557 HOH HOH . E 5 HOH A 156 656 576 HOH HOH . E 5 HOH A 157 657 635 HOH HOH . E 5 HOH A 158 658 626 HOH HOH . E 5 HOH A 159 659 603 HOH HOH . E 5 HOH A 160 660 589 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 2.589 _atom_site.Cartn_y 42.527 _atom_site.Cartn_z -9.491 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #