data_6FWZ # _model_server_result.job_id p414zKXHs-ql83ndMoxlMQ _model_server_result.datetime_utc '2024-11-26 11:01:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fwz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6FWZ # _exptl.entry_id 6FWZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 607.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FWZ _cell.length_a 102.459 _cell.length_b 102.459 _cell.length_c 238.209 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 51.2295 88.732097 277.9105 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 186 A ASN 185 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 A OD1 ASP 253 A ASP 252 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 B MG MG . A MG 501 1_555 C O1A UD1 . A UD1 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 B MG MG . A MG 501 1_555 C O1B UD1 . A UD1 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 B MG MG . A MG 501 1_555 F O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 B MG MG . A MG 501 1_555 F O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C17 H27 N3 O17 P2' _chem_comp.formula_weight 607.354 _chem_comp.id UD1 _chem_comp.mon_nstd_flag . _chem_comp.name URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' C2' UD1 sing 483 n n C1' O1' UD1 sing 484 n n C1' O5' UD1 sing 485 n n C1' H1' UD1 sing 486 n n C2' C3' UD1 sing 487 n n C2' N2' UD1 sing 488 n n C2' H2' UD1 sing 489 n n C3' C4' UD1 sing 490 n n C3' O3' UD1 sing 491 n n C3' H3' UD1 sing 492 n n C4' C5' UD1 sing 493 n n C4' O4' UD1 sing 494 n n C4' H4' UD1 sing 495 n n C5' C6' UD1 sing 496 n n C5' O5' UD1 sing 497 n n C5' H5' UD1 sing 498 n n C6' O6' UD1 sing 499 n n C6' "H6'1" UD1 sing 500 n n C6' "H6'2" UD1 sing 501 n n C7' C8' UD1 sing 502 n n C7' N2' UD1 sing 503 n n C7' O7' UD1 doub 504 n n C8' "H8'1" UD1 sing 505 n n C8' "H8'2" UD1 sing 506 n n C8' "H8'3" UD1 sing 507 n n N2' HN2' UD1 sing 508 n n O1' PB UD1 sing 509 n n O3' HO3' UD1 sing 510 n n O4' HO4' UD1 sing 511 n n O6' HO6' UD1 sing 512 n n N1 C2 UD1 sing 513 n n N1 C6 UD1 sing 514 n n N1 C1B UD1 sing 515 n n C2 N3 UD1 sing 516 n n C2 O2 UD1 doub 517 n n N3 C4 UD1 sing 518 n n N3 HN3 UD1 sing 519 n n C4 C5 UD1 sing 520 n n C4 O4 UD1 doub 521 n n C5 C6 UD1 doub 522 n n C5 H5 UD1 sing 523 n n C6 H6 UD1 sing 524 n n C1B C2B UD1 sing 525 n n C1B O4B UD1 sing 526 n n C1B H1B UD1 sing 527 n n C2B O2' UD1 sing 528 n n C2B C3B UD1 sing 529 n n C2B H2B UD1 sing 530 n n O2' HO2' UD1 sing 531 n n C3B C4B UD1 sing 532 n n C3B O3B UD1 sing 533 n n C3B H3B UD1 sing 534 n n C4B O4B UD1 sing 535 n n C4B C5B UD1 sing 536 n n C4B H4B UD1 sing 537 n n O3B HO3A UD1 sing 538 n n C5B O5B UD1 sing 539 n n C5B "H5'1" UD1 sing 540 n n C5B "H5'2" UD1 sing 541 n n O5B PA UD1 sing 542 n n PA O1A UD1 doub 543 n n PA O2A UD1 sing 544 n n PA O3A UD1 sing 545 n n O2A HOA2 UD1 sing 546 n n O3A PB UD1 sing 547 n n PB O1B UD1 doub 548 n n PB O2B UD1 sing 549 n n O2B HOB2 UD1 sing 550 n n # _atom_sites.entry_id 6FWZ _atom_sites.fract_transf_matrix[1][1] 0.00976 _atom_sites.fract_transf_matrix[1][2] 0.005635 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 1 MG MG . C 3 UD1 A 1 502 1 UD1 UD1 . D 4 UNL A 1 503 1 UNL UNL . E 5 P6L A 1 504 1 P6L P6L . F 6 HOH A 1 601 19 HOH HOH . F 6 HOH A 2 602 23 HOH HOH . F 6 HOH A 3 603 16 HOH HOH . F 6 HOH A 4 604 4 HOH HOH . F 6 HOH A 5 605 15 HOH HOH . F 6 HOH A 6 606 10 HOH HOH . F 6 HOH A 7 607 20 HOH HOH . F 6 HOH A 8 608 5 HOH HOH . F 6 HOH A 9 609 13 HOH HOH . F 6 HOH A 10 610 2 HOH HOH . F 6 HOH A 11 611 26 HOH HOH . F 6 HOH A 12 612 11 HOH HOH . F 6 HOH A 13 613 12 HOH HOH . F 6 HOH A 14 614 3 HOH HOH . F 6 HOH A 15 615 1 HOH HOH . F 6 HOH A 16 616 14 HOH HOH . F 6 HOH A 17 617 6 HOH HOH . F 6 HOH A 18 618 21 HOH HOH . F 6 HOH A 19 619 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' UD1 . . . C 3 38.815 57.142 131.525 1 99.43 ? C1' UD1 502 A 1 HETATM 2 C C2' UD1 . . . C 3 39.199 58.612 131.422 1 103.95 ? C2' UD1 502 A 1 HETATM 3 C C3' UD1 . . . C 3 37.978 59.46 131.097 1 99.23 ? C3' UD1 502 A 1 HETATM 4 C C4' UD1 . . . C 3 37.351 58.947 129.812 1 92.98 ? C4' UD1 502 A 1 HETATM 5 C C5' UD1 . . . C 3 37.049 57.454 129.919 1 93.71 ? C5' UD1 502 A 1 HETATM 6 C C6' UD1 . . . C 3 36.558 56.861 128.614 1 98.55 ? C6' UD1 502 A 1 HETATM 7 C C7' UD1 . . . C 3 41.021 59.781 132.559 1 114.3 ? C7' UD1 502 A 1 HETATM 8 C C8' UD1 . . . C 3 41.563 60.263 133.87 1 114.14 ? C8' UD1 502 A 1 HETATM 9 N N2' UD1 . . . C 3 39.873 59.102 132.613 1 112.36 ? N2' UD1 502 A 1 HETATM 10 O O1' UD1 . . . C 3 37.96 56.917 132.633 1 99.61 ? O1' UD1 502 A 1 HETATM 11 O O3' UD1 . . . C 3 38.34 60.835 131.003 1 98.45 ? O3' UD1 502 A 1 HETATM 12 O O4' UD1 . . . C 3 36.114 59.613 129.626 1 105.38 ? O4' UD1 502 A 1 HETATM 13 O O5' UD1 . . . C 3 38.221 56.706 130.313 1 90.96 ? O5' UD1 502 A 1 HETATM 14 O O6' UD1 . . . C 3 36.659 55.436 128.566 1 101.56 ? O6' UD1 502 A 1 HETATM 15 O O7' UD1 . . . C 3 41.596 60.003 131.495 1 115 ? O7' UD1 502 A 1 HETATM 16 N N1 UD1 . . . C 3 32.689 55.034 126.024 1 109.24 ? N1 UD1 502 A 1 HETATM 17 C C2 UD1 . . . C 3 32.141 55.391 124.809 1 106.08 ? C2 UD1 502 A 1 HETATM 18 N N3 UD1 . . . C 3 32.748 54.832 123.709 1 105.59 ? N3 UD1 502 A 1 HETATM 19 C C4 UD1 . . . C 3 33.825 53.969 123.702 1 103.01 ? C4 UD1 502 A 1 HETATM 20 C C5 UD1 . . . C 3 34.326 53.628 124.996 1 105.04 ? C5 UD1 502 A 1 HETATM 21 C C6 UD1 . . . C 3 33.75 54.148 126.094 1 111.41 ? C6 UD1 502 A 1 HETATM 22 O O2 UD1 . . . C 3 31.193 56.151 124.708 1 117.3 ? O2 UD1 502 A 1 HETATM 23 O O4 UD1 . . . C 3 34.269 53.551 122.624 1 103.44 ? O4 UD1 502 A 1 HETATM 24 C C1B UD1 . . . C 3 31.991 55.544 127.239 1 117.6 ? C1B UD1 502 A 1 HETATM 25 C C2B UD1 . . . C 3 30.78 54.659 127.563 1 120.04 ? C2B UD1 502 A 1 HETATM 26 O O2' UD1 . . . C 3 29.788 55.353 128.311 1 129.86 ? O2' UD1 502 A 1 HETATM 27 C C3B UD1 . . . C 3 31.434 53.577 128.416 1 116.88 ? C3B UD1 502 A 1 HETATM 28 C C4B UD1 . . . C 3 32.406 54.402 129.248 1 116.92 ? C4B UD1 502 A 1 HETATM 29 O O4B UD1 . . . C 3 32.844 55.469 128.371 1 122.3 ? O4B UD1 502 A 1 HETATM 30 O O3B UD1 . . . C 3 30.485 52.883 129.219 1 127.24 ? O3B UD1 502 A 1 HETATM 31 C C5B UD1 . . . C 3 33.602 53.647 129.762 1 114.06 ? C5B UD1 502 A 1 HETATM 32 O O5B UD1 . . . C 3 34.411 54.584 130.494 1 101.99 ? O5B UD1 502 A 1 HETATM 33 P PA UD1 . . . C 3 35.116 54.064 131.818 1 96.47 ? PA UD1 502 A 1 HETATM 34 O O1A UD1 . . . C 3 35.986 52.866 131.677 1 95.64 ? O1A UD1 502 A 1 HETATM 35 O O2A UD1 . . . C 3 34.026 53.819 132.842 1 105.1 ? O2A UD1 502 A 1 HETATM 36 O O3A UD1 . . . C 3 35.903 55.356 132.297 1 89.73 ? O3A UD1 502 A 1 HETATM 37 P PB UD1 . . . C 3 37.302 55.481 133.029 1 94.68 ? PB UD1 502 A 1 HETATM 38 O O1B UD1 . . . C 3 38.116 54.288 132.698 1 96.56 ? O1B UD1 502 A 1 HETATM 39 O O2B UD1 . . . C 3 36.98 55.563 134.504 1 102.93 ? O2B UD1 502 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 451 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #