data_6FYM
#
_model_server_result.job_id            1_S-NaP-75hWdfAOf0Noow 
_model_server_result.datetime_utc      '2024-11-12 20:43:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fym 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1901}' 
#
_entry.id    6FYM 
#
_exptl.entry_id    6FYM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              298.363 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7,8-dimethyl-2-(pyrimidin-2-ylsulfanylmethyl)-3~{H}-quinazolin-4-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         119.77 
_cell.angle_beta          100.01 
_cell.angle_gamma         91.44 
_cell.entry_id            6FYM 
_cell.length_a            40.37 
_cell.length_b            84.04 
_cell.length_c            84.44 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FYM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,K 1 1 
B,F,L 2 1 
C,G,H,M 3 1 
D,I,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 1618 1_555 B SG CYS 10 B CYS 1618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
disulf ? disulf2 C SG CYS 10 C CYS 1618 1_555 D SG CYS 10 D CYS 1618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? 
#
_chem_comp.formula           'C15 H14 N4 O S' 
_chem_comp.formula_weight    298.363 
_chem_comp.id                EBB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7,8-dimethyl-2-(pyrimidin-2-ylsulfanylmethyl)-3~{H}-quinazolin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C8 EBB doub 83 n n 
C6 C7 EBB sing 84 n y 
C6 C5 EBB doub 85 n y 
C7 C1 EBB doub 86 n y 
C8 C5 EBB sing 87 n n 
C8 N EBB sing 88 n n 
C5 C4 EBB sing 89 n y 
C1 C EBB sing 90 n n 
C1 C2 EBB sing 91 n y 
N C9 EBB sing 92 n n 
C4 C2 EBB doub 93 n y 
C4 N1 EBB sing 94 n n 
C2 C3 EBB sing 95 n n 
C9 N1 EBB doub 96 n n 
C9 C10 EBB sing 97 n n 
S C10 EBB sing 98 n n 
S C11 EBB sing 99 n n 
C11 N2 EBB doub 100 n y 
C11 N3 EBB sing 101 n y 
N2 C12 EBB sing 102 n y 
N3 C14 EBB doub 103 n y 
C12 C13 EBB doub 104 n y 
C14 C13 EBB sing 105 n y 
C H1 EBB sing 106 n n 
C H2 EBB sing 107 n n 
C H3 EBB sing 108 n n 
C3 H4 EBB sing 109 n n 
C3 H5 EBB sing 110 n n 
C3 H6 EBB sing 111 n n 
C6 H7 EBB sing 112 n n 
C7 H8 EBB sing 113 n n 
C10 H9 EBB sing 114 n n 
C10 H10 EBB sing 115 n n 
C12 H11 EBB sing 116 n n 
C13 H12 EBB sing 117 n n 
C14 H13 EBB sing 118 n n 
N H14 EBB sing 119 n n 
#
_atom_sites.entry_id                     6FYM 
_atom_sites.fract_transf_matrix[1][1]    0.024771 
_atom_sites.fract_transf_matrix[1][2]    0.000623 
_atom_sites.fract_transf_matrix[1][3]    0.005447 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011903 
_atom_sites.fract_transf_matrix[2][3]    0.007035 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013969 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EBB A 1 1901 1 EBB M14 . 
F 2 EBB B 1 1901 2 EBB M14 . 
G 2 EBB C 1 1901 3 EBB M14 . 
H 3 NO3 C 1 1902 602 NO3 NO3 . 
I 2 EBB D 1 1901 4 EBB M14 . 
J 3 NO3 D 1 1902 601 NO3 NO3 . 
K 4 HOH A 1 2001 98 HOH HOH . 
K 4 HOH A 2 2002 100 HOH HOH . 
K 4 HOH A 3 2003 46 HOH HOH . 
K 4 HOH A 4 2004 93 HOH HOH . 
K 4 HOH A 5 2005 95 HOH HOH . 
K 4 HOH A 6 2006 99 HOH HOH . 
K 4 HOH A 7 2007 103 HOH HOH . 
K 4 HOH A 8 2008 90 HOH HOH . 
K 4 HOH A 9 2009 91 HOH HOH . 
K 4 HOH A 10 2010 43 HOH HOH . 
K 4 HOH A 11 2011 96 HOH HOH . 
K 4 HOH A 12 2012 97 HOH HOH . 
K 4 HOH A 13 2013 48 HOH HOH . 
K 4 HOH A 14 2014 53 HOH HOH . 
K 4 HOH A 15 2015 94 HOH HOH . 
K 4 HOH A 16 2016 45 HOH HOH . 
K 4 HOH A 17 2017 92 HOH HOH . 
K 4 HOH A 18 2018 104 HOH HOH . 
L 4 HOH B 1 2001 59 HOH HOH . 
L 4 HOH B 2 2002 29 HOH HOH . 
L 4 HOH B 3 2003 60 HOH HOH . 
L 4 HOH B 4 2004 33 HOH HOH . 
L 4 HOH B 5 2005 3 HOH HOH . 
L 4 HOH B 6 2006 12 HOH HOH . 
L 4 HOH B 7 2007 6 HOH HOH . 
L 4 HOH B 8 2008 11 HOH HOH . 
L 4 HOH B 9 2009 70 HOH HOH . 
L 4 HOH B 10 2010 78 HOH HOH . 
L 4 HOH B 11 2011 64 HOH HOH . 
L 4 HOH B 12 2012 81 HOH HOH . 
L 4 HOH B 13 2013 54 HOH HOH . 
L 4 HOH B 14 2014 66 HOH HOH . 
L 4 HOH B 15 2015 47 HOH HOH . 
L 4 HOH B 16 2016 7 HOH HOH . 
L 4 HOH B 17 2017 87 HOH HOH . 
L 4 HOH B 18 2018 80 HOH HOH . 
L 4 HOH B 19 2019 86 HOH HOH . 
L 4 HOH B 20 2020 69 HOH HOH . 
L 4 HOH B 21 2021 88 HOH HOH . 
L 4 HOH B 22 2022 20 HOH HOH . 
L 4 HOH B 23 2023 18 HOH HOH . 
L 4 HOH B 24 2024 24 HOH HOH . 
L 4 HOH B 25 2025 2 HOH HOH . 
L 4 HOH B 26 2026 73 HOH HOH . 
L 4 HOH B 27 2027 5 HOH HOH . 
L 4 HOH B 28 2028 89 HOH HOH . 
L 4 HOH B 29 2029 58 HOH HOH . 
L 4 HOH B 30 2030 30 HOH HOH . 
L 4 HOH B 31 2031 21 HOH HOH . 
L 4 HOH B 32 2032 13 HOH HOH . 
L 4 HOH B 33 2033 75 HOH HOH . 
L 4 HOH B 34 2034 77 HOH HOH . 
L 4 HOH B 35 2035 85 HOH HOH . 
L 4 HOH B 36 2036 16 HOH HOH . 
L 4 HOH B 37 2037 31 HOH HOH . 
L 4 HOH B 38 2038 79 HOH HOH . 
L 4 HOH B 39 2039 55 HOH HOH . 
L 4 HOH B 40 2040 23 HOH HOH . 
L 4 HOH B 41 2041 27 HOH HOH . 
M 4 HOH C 1 2001 10 HOH HOH . 
M 4 HOH C 2 2002 26 HOH HOH . 
M 4 HOH C 3 2003 8 HOH HOH . 
M 4 HOH C 4 2004 62 HOH HOH . 
M 4 HOH C 5 2005 19 HOH HOH . 
M 4 HOH C 6 2006 22 HOH HOH . 
M 4 HOH C 7 2007 35 HOH HOH . 
M 4 HOH C 8 2008 4 HOH HOH . 
M 4 HOH C 9 2009 32 HOH HOH . 
M 4 HOH C 10 2010 83 HOH HOH . 
M 4 HOH C 11 2011 39 HOH HOH . 
M 4 HOH C 12 2012 68 HOH HOH . 
M 4 HOH C 13 2013 17 HOH HOH . 
M 4 HOH C 14 2014 14 HOH HOH . 
M 4 HOH C 15 2015 67 HOH HOH . 
M 4 HOH C 16 2016 34 HOH HOH . 
M 4 HOH C 17 2017 9 HOH HOH . 
M 4 HOH C 18 2018 52 HOH HOH . 
M 4 HOH C 19 2019 74 HOH HOH . 
M 4 HOH C 20 2020 61 HOH HOH . 
M 4 HOH C 21 2021 25 HOH HOH . 
M 4 HOH C 22 2022 56 HOH HOH . 
M 4 HOH C 23 2023 65 HOH HOH . 
M 4 HOH C 24 2024 84 HOH HOH . 
M 4 HOH C 25 2025 76 HOH HOH . 
M 4 HOH C 26 2026 72 HOH HOH . 
M 4 HOH C 27 2027 28 HOH HOH . 
M 4 HOH C 28 2028 63 HOH HOH . 
M 4 HOH C 29 2029 51 HOH HOH . 
M 4 HOH C 30 2030 1 HOH HOH . 
M 4 HOH C 31 2031 38 HOH HOH . 
M 4 HOH C 32 2032 57 HOH HOH . 
M 4 HOH C 33 2033 71 HOH HOH . 
M 4 HOH C 34 2034 36 HOH HOH . 
N 4 HOH D 1 2001 40 HOH HOH . 
N 4 HOH D 2 2002 44 HOH HOH . 
N 4 HOH D 3 2003 49 HOH HOH . 
N 4 HOH D 4 2004 102 HOH HOH . 
N 4 HOH D 5 2005 50 HOH HOH . 
N 4 HOH D 6 2006 15 HOH HOH . 
N 4 HOH D 7 2007 37 HOH HOH . 
N 4 HOH D 8 2008 82 HOH HOH . 
N 4 HOH D 9 2009 42 HOH HOH . 
N 4 HOH D 10 2010 101 HOH HOH . 
N 4 HOH D 11 2011 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C EBB . . . F 2 -16.395 -65.081 2.281 1 39.74 ? C EBB 1901 B 1 
HETATM 2 C C1 EBB . . . F 2 -15.884 -65.832 1.08 1 40.82 ? C1 EBB 1901 B 1 
HETATM 3 C C2 EBB . . . F 2 -16.566 -66.954 0.588 1 41.13 ? C2 EBB 1901 B 1 
HETATM 4 C C3 EBB . . . F 2 -17.831 -67.435 1.255 1 39.41 ? C3 EBB 1901 B 1 
HETATM 5 C C4 EBB . . . F 2 -16.057 -67.625 -0.534 1 42.1 ? C4 EBB 1901 B 1 
HETATM 6 C C5 EBB . . . F 2 -14.88 -67.184 -1.16 1 39.46 ? C5 EBB 1901 B 1 
HETATM 7 C C6 EBB . . . F 2 -14.215 -66.068 -0.659 1 36.87 ? C6 EBB 1901 B 1 
HETATM 8 C C7 EBB . . . F 2 -14.72 -65.409 0.445 1 37.34 ? C7 EBB 1901 B 1 
HETATM 9 C C8 EBB . . . F 2 -14.369 -67.907 -2.334 1 37.69 ? C8 EBB 1901 B 1 
HETATM 10 C C9 EBB . . . F 2 -16.293 -69.356 -2.028 1 48.2 ? C9 EBB 1901 B 1 
HETATM 11 C C10 EBB . . . F 2 -17.037 -70.556 -2.542 1 56.52 ? C10 EBB 1901 B 1 
HETATM 12 C C11 EBB . . . F 2 -17.014 -72.6 -4.368 1 66.95 ? C11 EBB 1901 B 1 
HETATM 13 C C12 EBB . . . F 2 -17.2 -74.452 -5.633 1 60.07 ? C12 EBB 1901 B 1 
HETATM 14 C C13 EBB . . . F 2 -17.984 -75.053 -4.678 1 59.37 ? C13 EBB 1901 B 1 
HETATM 15 C C14 EBB . . . F 2 -18.234 -74.305 -3.552 1 62.45 ? C14 EBB 1901 B 1 
HETATM 16 O O EBB . . . F 2 -13.35 -67.59 -2.941 1 33.41 ? O EBB 1901 B 1 
HETATM 17 N N EBB . . . F 2 -15.119 -68.99 -2.727 1 42.15 ? N EBB 1901 B 1 
HETATM 18 S S EBB . . . F 2 -16.374 -70.982 -4.164 1 67.57 ? S EBB 1901 B 1 
HETATM 19 N N1 EBB . . . F 2 -16.772 -68.719 -0.969 1 45.98 ? N1 EBB 1901 B 1 
HETATM 20 N N3 EBB . . . F 2 -17.759 -73.066 -3.368 1 65.81 ? N3 EBB 1901 B 1 
HETATM 21 N N2 EBB . . . F 2 -16.696 -73.217 -5.505 1 63.55 ? N2 EBB 1901 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#