data_6FYQ # _model_server_result.job_id V5GdupQACMery4cEkJQoDg _model_server_result.datetime_utc '2024-12-21 18:06:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6FYQ # _exptl.entry_id 6FYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FYQ _cell.length_a 100.886 _cell.length_b 100.886 _cell.length_c 97.411 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 32.470333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6FYQ _atom_sites.fract_transf_matrix[1][1] 0.009912 _atom_sites.fract_transf_matrix[1][2] 0.005723 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 501 1 PLP PLP . C 3 EDO A 1 502 2 EDO EDO . D 3 EDO A 1 503 3 EDO EDO . E 3 EDO A 1 504 4 EDO EDO . F 4 CL A 1 505 1 CL CL . G 5 HOH A 1 601 35 HOH HOH . G 5 HOH A 2 602 74 HOH HOH . G 5 HOH A 3 603 39 HOH HOH . G 5 HOH A 4 604 22 HOH HOH . G 5 HOH A 5 605 38 HOH HOH . G 5 HOH A 6 606 61 HOH HOH . G 5 HOH A 7 607 68 HOH HOH . G 5 HOH A 8 608 41 HOH HOH . G 5 HOH A 9 609 67 HOH HOH . G 5 HOH A 10 610 79 HOH HOH . G 5 HOH A 11 611 71 HOH HOH . G 5 HOH A 12 612 29 HOH HOH . G 5 HOH A 13 613 73 HOH HOH . G 5 HOH A 14 614 6 HOH HOH . G 5 HOH A 15 615 17 HOH HOH . G 5 HOH A 16 616 70 HOH HOH . G 5 HOH A 17 617 10 HOH HOH . G 5 HOH A 18 618 7 HOH HOH . G 5 HOH A 19 619 43 HOH HOH . G 5 HOH A 20 620 16 HOH HOH . G 5 HOH A 21 621 62 HOH HOH . G 5 HOH A 22 622 9 HOH HOH . G 5 HOH A 23 623 49 HOH HOH . G 5 HOH A 24 624 19 HOH HOH . G 5 HOH A 25 625 5 HOH HOH . G 5 HOH A 26 626 26 HOH HOH . G 5 HOH A 27 627 8 HOH HOH . G 5 HOH A 28 628 11 HOH HOH . G 5 HOH A 29 629 34 HOH HOH . G 5 HOH A 30 630 24 HOH HOH . G 5 HOH A 31 631 4 HOH HOH . G 5 HOH A 32 632 30 HOH HOH . G 5 HOH A 33 633 37 HOH HOH . G 5 HOH A 34 634 60 HOH HOH . G 5 HOH A 35 635 72 HOH HOH . G 5 HOH A 36 636 33 HOH HOH . G 5 HOH A 37 637 57 HOH HOH . G 5 HOH A 38 638 45 HOH HOH . G 5 HOH A 39 639 23 HOH HOH . G 5 HOH A 40 640 63 HOH HOH . G 5 HOH A 41 641 14 HOH HOH . G 5 HOH A 42 642 13 HOH HOH . G 5 HOH A 43 643 25 HOH HOH . G 5 HOH A 44 644 21 HOH HOH . G 5 HOH A 45 645 27 HOH HOH . G 5 HOH A 46 646 55 HOH HOH . G 5 HOH A 47 647 54 HOH HOH . G 5 HOH A 48 648 20 HOH HOH . G 5 HOH A 49 649 78 HOH HOH . G 5 HOH A 50 650 51 HOH HOH . G 5 HOH A 51 651 64 HOH HOH . G 5 HOH A 52 652 56 HOH HOH . G 5 HOH A 53 653 52 HOH HOH . G 5 HOH A 54 654 15 HOH HOH . G 5 HOH A 55 655 65 HOH HOH . G 5 HOH A 56 656 48 HOH HOH . G 5 HOH A 57 657 77 HOH HOH . G 5 HOH A 58 658 46 HOH HOH . G 5 HOH A 59 659 40 HOH HOH . G 5 HOH A 60 660 12 HOH HOH . G 5 HOH A 61 661 80 HOH HOH . G 5 HOH A 62 662 28 HOH HOH . G 5 HOH A 63 663 66 HOH HOH . G 5 HOH A 64 664 32 HOH HOH . G 5 HOH A 65 665 44 HOH HOH . G 5 HOH A 66 666 53 HOH HOH . G 5 HOH A 67 667 18 HOH HOH . G 5 HOH A 68 668 58 HOH HOH . G 5 HOH A 69 669 42 HOH HOH . G 5 HOH A 70 670 59 HOH HOH . G 5 HOH A 71 671 76 HOH HOH . G 5 HOH A 72 672 75 HOH HOH . G 5 HOH A 73 673 50 HOH HOH . G 5 HOH A 74 674 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 29.084 23.078 28.836 1 65.89 ? C1 EDO 504 A 1 HETATM 2 O O1 EDO . . . E 3 27.999 23.45 27.985 1 65.55 ? O1 EDO 504 A 1 HETATM 3 C C2 EDO . . . E 3 28.554 22.062 29.841 1 67.78 ? C2 EDO 504 A 1 HETATM 4 O O2 EDO . . . E 3 29.405 21.987 30.991 1 68.69 ? O2 EDO 504 A 1 HETATM 5 H H11 EDO . . . E 3 29.477 23.955 29.355 1 79.06 ? H11 EDO 504 A 1 HETATM 6 H H12 EDO . . . E 3 29.896 22.644 28.249 1 79.06 ? H12 EDO 504 A 1 HETATM 7 H HO1 EDO . . . E 3 28.235 24.247 27.491 1 78.67 ? HO1 EDO 504 A 1 HETATM 8 H H21 EDO . . . E 3 28.494 21.08 29.368 1 81.33 ? H21 EDO 504 A 1 HETATM 9 H H22 EDO . . . E 3 27.547 22.348 30.151 1 81.33 ? H22 EDO 504 A 1 HETATM 10 H HO2 EDO . . . E 3 29.011 21.393 31.645 1 82.43 ? HO2 EDO 504 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #