data_6FYS # _model_server_result.job_id 8GvQ6PJF5pjKGHezig-rQA _model_server_result.datetime_utc '2024-11-27 07:14:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":203}' # _entry.id 6FYS # _exptl.entry_id 6FYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.96 _cell.angle_gamma 90 _cell.entry_id 6FYS _cell.length_a 63.96 _cell.length_b 85.7 _cell.length_c 103.78 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,N 1 1 B,O 2 1 C,P 3 1 D,I,Q 4 1 E,R 5 1 F,J,S 6 1 G,T 7 1 H,K,L,M,U 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 C CYS 22 1_555 A SG CYS 96 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 50 C CYS 50 1_555 A SG CYS 106 C CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf3 B SG CYS 22 A CYS 22 1_555 B SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 B SG CYS 50 A CYS 50 1_555 B SG CYS 106 A CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf5 C SG CYS 22 B CYS 22 1_555 C SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 C SG CYS 50 B CYS 50 1_555 C SG CYS 106 B CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf7 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 D SG CYS 50 D CYS 50 1_555 D SG CYS 106 D CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf9 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf10 E SG CYS 50 E CYS 50 1_555 E SG CYS 106 E CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf11 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf12 F SG CYS 50 F CYS 50 1_555 F SG CYS 106 F CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf13 G SG CYS 22 G CYS 22 1_555 G SG CYS 96 G CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf14 G SG CYS 50 G CYS 50 1_555 G SG CYS 106 G CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf15 H SG CYS 22 H CYS 22 1_555 H SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf16 H SG CYS 50 H CYS 50 1_555 H SG CYS 106 H CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6FYS _atom_sites.fract_transf_matrix[1][1] 0.015635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001081 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 EDO D 1 201 1 EDO EDO . J 2 EDO F 1 201 2 EDO EDO . K 2 EDO H 1 201 3 EDO EDO . L 2 EDO H 1 202 4 EDO EDO . M 2 EDO H 1 203 5 EDO EDO . N 3 HOH C 1 201 138 HOH HOH . N 3 HOH C 2 202 65 HOH HOH . N 3 HOH C 3 203 35 HOH HOH . N 3 HOH C 4 204 57 HOH HOH . N 3 HOH C 5 205 61 HOH HOH . N 3 HOH C 6 206 49 HOH HOH . N 3 HOH C 7 207 18 HOH HOH . N 3 HOH C 8 208 28 HOH HOH . N 3 HOH C 9 209 23 HOH HOH . N 3 HOH C 10 210 169 HOH HOH . N 3 HOH C 11 211 15 HOH HOH . N 3 HOH C 12 212 40 HOH HOH . N 3 HOH C 13 213 89 HOH HOH . N 3 HOH C 14 214 1 HOH HOH . N 3 HOH C 15 215 186 HOH HOH . N 3 HOH C 16 216 87 HOH HOH . N 3 HOH C 17 217 132 HOH HOH . N 3 HOH C 18 218 96 HOH HOH . N 3 HOH C 19 219 16 HOH HOH . N 3 HOH C 20 220 201 HOH HOH . N 3 HOH C 21 221 149 HOH HOH . N 3 HOH C 22 222 100 HOH HOH . N 3 HOH C 23 223 43 HOH HOH . N 3 HOH C 24 224 58 HOH HOH . N 3 HOH C 25 225 93 HOH HOH . N 3 HOH C 26 226 12 HOH HOH . N 3 HOH C 27 227 193 HOH HOH . N 3 HOH C 28 228 13 HOH HOH . N 3 HOH C 29 229 121 HOH HOH . N 3 HOH C 30 230 50 HOH HOH . N 3 HOH C 31 231 125 HOH HOH . N 3 HOH C 32 232 128 HOH HOH . N 3 HOH C 33 233 38 HOH HOH . N 3 HOH C 34 234 110 HOH HOH . N 3 HOH C 35 235 176 HOH HOH . N 3 HOH C 36 236 134 HOH HOH . N 3 HOH C 37 237 187 HOH HOH . N 3 HOH C 38 238 182 HOH HOH . N 3 HOH C 39 239 183 HOH HOH . N 3 HOH C 40 240 143 HOH HOH . N 3 HOH C 41 241 202 HOH HOH . O 3 HOH A 1 201 42 HOH HOH . O 3 HOH A 2 202 163 HOH HOH . O 3 HOH A 3 203 122 HOH HOH . O 3 HOH A 4 204 31 HOH HOH . O 3 HOH A 5 205 154 HOH HOH . O 3 HOH A 6 206 55 HOH HOH . O 3 HOH A 7 207 39 HOH HOH . O 3 HOH A 8 208 2 HOH HOH . O 3 HOH A 9 209 20 HOH HOH . O 3 HOH A 10 210 6 HOH HOH . O 3 HOH A 11 211 160 HOH HOH . O 3 HOH A 12 212 8 HOH HOH . O 3 HOH A 13 213 192 HOH HOH . O 3 HOH A 14 214 44 HOH HOH . O 3 HOH A 15 215 113 HOH HOH . O 3 HOH A 16 216 114 HOH HOH . O 3 HOH A 17 217 141 HOH HOH . O 3 HOH A 18 218 30 HOH HOH . O 3 HOH A 19 219 184 HOH HOH . O 3 HOH A 20 220 98 HOH HOH . O 3 HOH A 21 221 124 HOH HOH . O 3 HOH A 22 222 83 HOH HOH . O 3 HOH A 23 223 161 HOH HOH . O 3 HOH A 24 224 167 HOH HOH . O 3 HOH A 25 225 63 HOH HOH . P 3 HOH B 1 201 190 HOH HOH . P 3 HOH B 2 202 115 HOH HOH . P 3 HOH B 3 203 67 HOH HOH . P 3 HOH B 4 204 5 HOH HOH . P 3 HOH B 5 205 106 HOH HOH . P 3 HOH B 6 206 10 HOH HOH . P 3 HOH B 7 207 46 HOH HOH . P 3 HOH B 8 208 147 HOH HOH . P 3 HOH B 9 209 117 HOH HOH . P 3 HOH B 10 210 66 HOH HOH . P 3 HOH B 11 211 41 HOH HOH . P 3 HOH B 12 212 140 HOH HOH . P 3 HOH B 13 213 85 HOH HOH . P 3 HOH B 14 214 129 HOH HOH . P 3 HOH B 15 215 3 HOH HOH . P 3 HOH B 16 216 47 HOH HOH . P 3 HOH B 17 217 37 HOH HOH . P 3 HOH B 18 218 29 HOH HOH . P 3 HOH B 19 219 112 HOH HOH . P 3 HOH B 20 220 197 HOH HOH . P 3 HOH B 21 221 171 HOH HOH . P 3 HOH B 22 222 177 HOH HOH . P 3 HOH B 23 223 111 HOH HOH . P 3 HOH B 24 224 54 HOH HOH . P 3 HOH B 25 225 203 HOH HOH . P 3 HOH B 26 226 194 HOH HOH . Q 3 HOH D 1 301 151 HOH HOH . Q 3 HOH D 2 302 162 HOH HOH . Q 3 HOH D 3 303 17 HOH HOH . Q 3 HOH D 4 304 19 HOH HOH . Q 3 HOH D 5 305 102 HOH HOH . Q 3 HOH D 6 306 142 HOH HOH . Q 3 HOH D 7 307 21 HOH HOH . Q 3 HOH D 8 308 25 HOH HOH . Q 3 HOH D 9 309 172 HOH HOH . Q 3 HOH D 10 310 33 HOH HOH . Q 3 HOH D 11 311 72 HOH HOH . Q 3 HOH D 12 312 34 HOH HOH . Q 3 HOH D 13 313 101 HOH HOH . Q 3 HOH D 14 314 4 HOH HOH . Q 3 HOH D 15 315 56 HOH HOH . Q 3 HOH D 16 316 173 HOH HOH . Q 3 HOH D 17 317 131 HOH HOH . Q 3 HOH D 18 318 181 HOH HOH . Q 3 HOH D 19 319 75 HOH HOH . Q 3 HOH D 20 320 88 HOH HOH . Q 3 HOH D 21 321 189 HOH HOH . Q 3 HOH D 22 322 152 HOH HOH . Q 3 HOH D 23 323 103 HOH HOH . Q 3 HOH D 24 324 81 HOH HOH . Q 3 HOH D 25 325 168 HOH HOH . Q 3 HOH D 26 326 107 HOH HOH . Q 3 HOH D 27 327 159 HOH HOH . Q 3 HOH D 28 328 45 HOH HOH . Q 3 HOH D 29 329 144 HOH HOH . Q 3 HOH D 30 330 180 HOH HOH . R 3 HOH E 1 201 146 HOH HOH . R 3 HOH E 2 202 78 HOH HOH . R 3 HOH E 3 203 14 HOH HOH . R 3 HOH E 4 204 94 HOH HOH . R 3 HOH E 5 205 185 HOH HOH . R 3 HOH E 6 206 139 HOH HOH . R 3 HOH E 7 207 109 HOH HOH . R 3 HOH E 8 208 119 HOH HOH . R 3 HOH E 9 209 68 HOH HOH . R 3 HOH E 10 210 74 HOH HOH . R 3 HOH E 11 211 204 HOH HOH . S 3 HOH F 1 301 80 HOH HOH . S 3 HOH F 2 302 164 HOH HOH . S 3 HOH F 3 303 91 HOH HOH . S 3 HOH F 4 304 92 HOH HOH . S 3 HOH F 5 305 26 HOH HOH . S 3 HOH F 6 306 62 HOH HOH . S 3 HOH F 7 307 36 HOH HOH . S 3 HOH F 8 308 145 HOH HOH . S 3 HOH F 9 309 70 HOH HOH . S 3 HOH F 10 310 157 HOH HOH . S 3 HOH F 11 311 191 HOH HOH . T 3 HOH G 1 201 48 HOH HOH . T 3 HOH G 2 202 95 HOH HOH . T 3 HOH G 3 203 79 HOH HOH . T 3 HOH G 4 204 60 HOH HOH . T 3 HOH G 5 205 11 HOH HOH . T 3 HOH G 6 206 22 HOH HOH . T 3 HOH G 7 207 179 HOH HOH . T 3 HOH G 8 208 99 HOH HOH . T 3 HOH G 9 209 130 HOH HOH . T 3 HOH G 10 210 127 HOH HOH . T 3 HOH G 11 211 69 HOH HOH . T 3 HOH G 12 212 27 HOH HOH . T 3 HOH G 13 213 116 HOH HOH . T 3 HOH G 14 214 7 HOH HOH . T 3 HOH G 15 215 77 HOH HOH . T 3 HOH G 16 216 59 HOH HOH . T 3 HOH G 17 217 198 HOH HOH . T 3 HOH G 18 218 82 HOH HOH . T 3 HOH G 19 219 108 HOH HOH . T 3 HOH G 20 220 166 HOH HOH . T 3 HOH G 21 221 137 HOH HOH . T 3 HOH G 22 222 153 HOH HOH . T 3 HOH G 23 223 136 HOH HOH . T 3 HOH G 24 224 148 HOH HOH . T 3 HOH G 25 225 135 HOH HOH . T 3 HOH G 26 226 105 HOH HOH . T 3 HOH G 27 227 170 HOH HOH . T 3 HOH G 28 228 165 HOH HOH . T 3 HOH G 29 229 175 HOH HOH . U 3 HOH H 1 301 156 HOH HOH . U 3 HOH H 2 302 158 HOH HOH . U 3 HOH H 3 303 126 HOH HOH . U 3 HOH H 4 304 104 HOH HOH . U 3 HOH H 5 305 199 HOH HOH . U 3 HOH H 6 306 51 HOH HOH . U 3 HOH H 7 307 9 HOH HOH . U 3 HOH H 8 308 76 HOH HOH . U 3 HOH H 9 309 97 HOH HOH . U 3 HOH H 10 310 174 HOH HOH . U 3 HOH H 11 311 90 HOH HOH . U 3 HOH H 12 312 150 HOH HOH . U 3 HOH H 13 313 86 HOH HOH . U 3 HOH H 14 314 52 HOH HOH . U 3 HOH H 15 315 118 HOH HOH . U 3 HOH H 16 316 53 HOH HOH . U 3 HOH H 17 317 133 HOH HOH . U 3 HOH H 18 318 73 HOH HOH . U 3 HOH H 19 319 84 HOH HOH . U 3 HOH H 20 320 24 HOH HOH . U 3 HOH H 21 321 64 HOH HOH . U 3 HOH H 22 322 120 HOH HOH . U 3 HOH H 23 323 71 HOH HOH . U 3 HOH H 24 324 188 HOH HOH . U 3 HOH H 25 325 178 HOH HOH . U 3 HOH H 26 326 32 HOH HOH . U 3 HOH H 27 327 200 HOH HOH . U 3 HOH H 28 328 123 HOH HOH . U 3 HOH H 29 329 155 HOH HOH . U 3 HOH H 30 330 196 HOH HOH . U 3 HOH H 31 331 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 2 128.298 2.308 72.896 1 57.3 ? C1 EDO 203 H 1 HETATM 2 O O1 EDO . . . M 2 129.206 3.179 72.196 1 57.48 ? O1 EDO 203 H 1 HETATM 3 C C2 EDO . . . M 2 126.906 2.359 72.271 1 62.78 ? C2 EDO 203 H 1 HETATM 4 O O2 EDO . . . M 2 126.041 1.378 72.872 1 65.58 ? O2 EDO 203 H 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #