data_6FZ2 # _model_server_result.job_id 8fnKDrTsIb32hgIHLC5Bzw _model_server_result.datetime_utc '2024-11-27 18:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1003}' # _entry.id 6FZ2 # _exptl.entry_id 6FZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.52 _cell.angle_gamma 90 _cell.entry_id 6FZ2 _cell.length_a 92.53 _cell.length_b 58.29 _cell.length_c 153.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 161 A LEU 254 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc2 D O1A MYA . A MYA 1001 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc3 D O5A MYA . A MYA 1001 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc4 B O LEU 161 B LEU 254 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc5 H O1A MYA . B MYA 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc6 H O5A MYA . B MYA 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 6FZ2 _atom_sites.fract_transf_matrix[1][1] 0.010807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000476 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 31A A 1 1000 1000 31A 31A . D 3 MYA A 1 1001 1001 MYA MYA . E 4 MG A 1 1002 1002 MG MG . F 5 GOL A 1 1003 1003 GOL GOL . G 2 31A B 1 1000 1000 31A 31A . H 3 MYA B 1 1001 1001 MYA MYA . I 4 MG B 1 1002 1002 MG MG . J 5 GOL B 1 1003 1003 GOL GOL . K 6 HOH A 1 1101 152 HOH HOH . K 6 HOH A 2 1102 73 HOH HOH . K 6 HOH A 3 1103 74 HOH HOH . K 6 HOH A 4 1104 52 HOH HOH . K 6 HOH A 5 1105 246 HOH HOH . K 6 HOH A 6 1106 164 HOH HOH . K 6 HOH A 7 1107 76 HOH HOH . K 6 HOH A 8 1108 203 HOH HOH . K 6 HOH A 9 1109 223 HOH HOH . K 6 HOH A 10 1110 45 HOH HOH . K 6 HOH A 11 1111 198 HOH HOH . K 6 HOH A 12 1112 25 HOH HOH . K 6 HOH A 13 1113 124 HOH HOH . K 6 HOH A 14 1114 158 HOH HOH . K 6 HOH A 15 1115 99 HOH HOH . K 6 HOH A 16 1116 146 HOH HOH . K 6 HOH A 17 1117 195 HOH HOH . K 6 HOH A 18 1118 49 HOH HOH . K 6 HOH A 19 1119 31 HOH HOH . K 6 HOH A 20 1120 116 HOH HOH . K 6 HOH A 21 1121 57 HOH HOH . K 6 HOH A 22 1122 209 HOH HOH . K 6 HOH A 23 1123 83 HOH HOH . K 6 HOH A 24 1124 2 HOH HOH . K 6 HOH A 25 1125 194 HOH HOH . K 6 HOH A 26 1126 19 HOH HOH . K 6 HOH A 27 1127 39 HOH HOH . K 6 HOH A 28 1128 56 HOH HOH . K 6 HOH A 29 1129 79 HOH HOH . K 6 HOH A 30 1130 24 HOH HOH . K 6 HOH A 31 1131 32 HOH HOH . K 6 HOH A 32 1132 92 HOH HOH . K 6 HOH A 33 1133 78 HOH HOH . K 6 HOH A 34 1134 156 HOH HOH . K 6 HOH A 35 1135 222 HOH HOH . K 6 HOH A 36 1136 168 HOH HOH . K 6 HOH A 37 1137 238 HOH HOH . K 6 HOH A 38 1138 47 HOH HOH . K 6 HOH A 39 1139 72 HOH HOH . K 6 HOH A 40 1140 48 HOH HOH . K 6 HOH A 41 1141 187 HOH HOH . K 6 HOH A 42 1142 41 HOH HOH . K 6 HOH A 43 1143 143 HOH HOH . K 6 HOH A 44 1144 29 HOH HOH . K 6 HOH A 45 1145 103 HOH HOH . K 6 HOH A 46 1146 9 HOH HOH . K 6 HOH A 47 1147 111 HOH HOH . K 6 HOH A 48 1148 221 HOH HOH . K 6 HOH A 49 1149 197 HOH HOH . K 6 HOH A 50 1150 147 HOH HOH . K 6 HOH A 51 1151 22 HOH HOH . K 6 HOH A 52 1152 30 HOH HOH . K 6 HOH A 53 1153 220 HOH HOH . K 6 HOH A 54 1154 43 HOH HOH . K 6 HOH A 55 1155 34 HOH HOH . K 6 HOH A 56 1156 46 HOH HOH . K 6 HOH A 57 1157 139 HOH HOH . K 6 HOH A 58 1158 96 HOH HOH . K 6 HOH A 59 1159 121 HOH HOH . K 6 HOH A 60 1160 188 HOH HOH . K 6 HOH A 61 1161 135 HOH HOH . K 6 HOH A 62 1162 105 HOH HOH . K 6 HOH A 63 1163 177 HOH HOH . K 6 HOH A 64 1164 82 HOH HOH . K 6 HOH A 65 1165 137 HOH HOH . K 6 HOH A 66 1166 215 HOH HOH . K 6 HOH A 67 1167 23 HOH HOH . K 6 HOH A 68 1168 204 HOH HOH . K 6 HOH A 69 1169 247 HOH HOH . K 6 HOH A 70 1170 253 HOH HOH . K 6 HOH A 71 1171 27 HOH HOH . K 6 HOH A 72 1172 212 HOH HOH . K 6 HOH A 73 1173 159 HOH HOH . K 6 HOH A 74 1174 119 HOH HOH . K 6 HOH A 75 1175 75 HOH HOH . K 6 HOH A 76 1176 237 HOH HOH . K 6 HOH A 77 1177 185 HOH HOH . K 6 HOH A 78 1178 88 HOH HOH . K 6 HOH A 79 1179 38 HOH HOH . K 6 HOH A 80 1180 60 HOH HOH . K 6 HOH A 81 1181 136 HOH HOH . K 6 HOH A 82 1182 4 HOH HOH . K 6 HOH A 83 1183 172 HOH HOH . K 6 HOH A 84 1184 250 HOH HOH . K 6 HOH A 85 1185 94 HOH HOH . K 6 HOH A 86 1186 13 HOH HOH . K 6 HOH A 87 1187 205 HOH HOH . K 6 HOH A 88 1188 58 HOH HOH . K 6 HOH A 89 1189 150 HOH HOH . K 6 HOH A 90 1190 161 HOH HOH . K 6 HOH A 91 1191 15 HOH HOH . K 6 HOH A 92 1192 93 HOH HOH . K 6 HOH A 93 1193 155 HOH HOH . K 6 HOH A 94 1194 123 HOH HOH . K 6 HOH A 95 1195 219 HOH HOH . K 6 HOH A 96 1196 62 HOH HOH . K 6 HOH A 97 1197 26 HOH HOH . K 6 HOH A 98 1198 67 HOH HOH . K 6 HOH A 99 1199 191 HOH HOH . K 6 HOH A 100 1200 179 HOH HOH . K 6 HOH A 101 1201 113 HOH HOH . K 6 HOH A 102 1202 89 HOH HOH . K 6 HOH A 103 1203 145 HOH HOH . K 6 HOH A 104 1204 202 HOH HOH . K 6 HOH A 105 1205 140 HOH HOH . K 6 HOH A 106 1206 86 HOH HOH . K 6 HOH A 107 1207 112 HOH HOH . K 6 HOH A 108 1208 91 HOH HOH . K 6 HOH A 109 1209 199 HOH HOH . K 6 HOH A 110 1210 110 HOH HOH . K 6 HOH A 111 1211 36 HOH HOH . K 6 HOH A 112 1212 17 HOH HOH . K 6 HOH A 113 1213 35 HOH HOH . K 6 HOH A 114 1214 189 HOH HOH . K 6 HOH A 115 1215 193 HOH HOH . K 6 HOH A 116 1216 61 HOH HOH . K 6 HOH A 117 1217 54 HOH HOH . K 6 HOH A 118 1218 70 HOH HOH . K 6 HOH A 119 1219 40 HOH HOH . K 6 HOH A 120 1220 192 HOH HOH . K 6 HOH A 121 1221 42 HOH HOH . K 6 HOH A 122 1222 211 HOH HOH . K 6 HOH A 123 1223 169 HOH HOH . K 6 HOH A 124 1224 28 HOH HOH . K 6 HOH A 125 1225 66 HOH HOH . K 6 HOH A 126 1226 80 HOH HOH . K 6 HOH A 127 1227 214 HOH HOH . K 6 HOH A 128 1228 236 HOH HOH . K 6 HOH A 129 1229 65 HOH HOH . K 6 HOH A 130 1230 240 HOH HOH . K 6 HOH A 131 1231 180 HOH HOH . K 6 HOH A 132 1232 200 HOH HOH . K 6 HOH A 133 1233 81 HOH HOH . K 6 HOH A 134 1234 210 HOH HOH . K 6 HOH A 135 1235 235 HOH HOH . K 6 HOH A 136 1236 231 HOH HOH . K 6 HOH A 137 1237 165 HOH HOH . K 6 HOH A 138 1238 229 HOH HOH . K 6 HOH A 139 1239 239 HOH HOH . K 6 HOH A 140 1240 85 HOH HOH . K 6 HOH A 141 1241 71 HOH HOH . K 6 HOH A 142 1242 163 HOH HOH . K 6 HOH A 143 1243 234 HOH HOH . K 6 HOH A 144 1244 213 HOH HOH . K 6 HOH A 145 1245 241 HOH HOH . K 6 HOH A 146 1246 244 HOH HOH . K 6 HOH A 147 1247 232 HOH HOH . K 6 HOH A 148 1248 257 HOH HOH . K 6 HOH A 149 1249 228 HOH HOH . L 6 HOH B 1 1101 114 HOH HOH . L 6 HOH B 2 1102 256 HOH HOH . L 6 HOH B 3 1103 5 HOH HOH . L 6 HOH B 4 1104 132 HOH HOH . L 6 HOH B 5 1105 84 HOH HOH . L 6 HOH B 6 1106 117 HOH HOH . L 6 HOH B 7 1107 149 HOH HOH . L 6 HOH B 8 1108 98 HOH HOH . L 6 HOH B 9 1109 138 HOH HOH . L 6 HOH B 10 1110 183 HOH HOH . L 6 HOH B 11 1111 131 HOH HOH . L 6 HOH B 12 1112 109 HOH HOH . L 6 HOH B 13 1113 102 HOH HOH . L 6 HOH B 14 1114 90 HOH HOH . L 6 HOH B 15 1115 175 HOH HOH . L 6 HOH B 16 1116 8 HOH HOH . L 6 HOH B 17 1117 171 HOH HOH . L 6 HOH B 18 1118 133 HOH HOH . L 6 HOH B 19 1119 21 HOH HOH . L 6 HOH B 20 1120 206 HOH HOH . L 6 HOH B 21 1121 115 HOH HOH . L 6 HOH B 22 1122 1 HOH HOH . L 6 HOH B 23 1123 11 HOH HOH . L 6 HOH B 24 1124 255 HOH HOH . L 6 HOH B 25 1125 18 HOH HOH . L 6 HOH B 26 1126 216 HOH HOH . L 6 HOH B 27 1127 242 HOH HOH . L 6 HOH B 28 1128 3 HOH HOH . L 6 HOH B 29 1129 148 HOH HOH . L 6 HOH B 30 1130 51 HOH HOH . L 6 HOH B 31 1131 20 HOH HOH . L 6 HOH B 32 1132 208 HOH HOH . L 6 HOH B 33 1133 201 HOH HOH . L 6 HOH B 34 1134 107 HOH HOH . L 6 HOH B 35 1135 217 HOH HOH . L 6 HOH B 36 1136 144 HOH HOH . L 6 HOH B 37 1137 153 HOH HOH . L 6 HOH B 38 1138 122 HOH HOH . L 6 HOH B 39 1139 166 HOH HOH . L 6 HOH B 40 1140 245 HOH HOH . L 6 HOH B 41 1141 64 HOH HOH . L 6 HOH B 42 1142 63 HOH HOH . L 6 HOH B 43 1143 186 HOH HOH . L 6 HOH B 44 1144 118 HOH HOH . L 6 HOH B 45 1145 142 HOH HOH . L 6 HOH B 46 1146 173 HOH HOH . L 6 HOH B 47 1147 141 HOH HOH . L 6 HOH B 48 1148 37 HOH HOH . L 6 HOH B 49 1149 33 HOH HOH . L 6 HOH B 50 1150 176 HOH HOH . L 6 HOH B 51 1151 167 HOH HOH . L 6 HOH B 52 1152 127 HOH HOH . L 6 HOH B 53 1153 10 HOH HOH . L 6 HOH B 54 1154 120 HOH HOH . L 6 HOH B 55 1155 100 HOH HOH . L 6 HOH B 56 1156 16 HOH HOH . L 6 HOH B 57 1157 12 HOH HOH . L 6 HOH B 58 1158 53 HOH HOH . L 6 HOH B 59 1159 230 HOH HOH . L 6 HOH B 60 1160 104 HOH HOH . L 6 HOH B 61 1161 160 HOH HOH . L 6 HOH B 62 1162 14 HOH HOH . L 6 HOH B 63 1163 154 HOH HOH . L 6 HOH B 64 1164 129 HOH HOH . L 6 HOH B 65 1165 126 HOH HOH . L 6 HOH B 66 1166 44 HOH HOH . L 6 HOH B 67 1167 50 HOH HOH . L 6 HOH B 68 1168 55 HOH HOH . L 6 HOH B 69 1169 196 HOH HOH . L 6 HOH B 70 1170 77 HOH HOH . L 6 HOH B 71 1171 68 HOH HOH . L 6 HOH B 72 1172 130 HOH HOH . L 6 HOH B 73 1173 7 HOH HOH . L 6 HOH B 74 1174 254 HOH HOH . L 6 HOH B 75 1175 184 HOH HOH . L 6 HOH B 76 1176 108 HOH HOH . L 6 HOH B 77 1177 151 HOH HOH . L 6 HOH B 78 1178 162 HOH HOH . L 6 HOH B 79 1179 106 HOH HOH . L 6 HOH B 80 1180 134 HOH HOH . L 6 HOH B 81 1181 95 HOH HOH . L 6 HOH B 82 1182 125 HOH HOH . L 6 HOH B 83 1183 69 HOH HOH . L 6 HOH B 84 1184 224 HOH HOH . L 6 HOH B 85 1185 207 HOH HOH . L 6 HOH B 86 1186 170 HOH HOH . L 6 HOH B 87 1187 178 HOH HOH . L 6 HOH B 88 1188 97 HOH HOH . L 6 HOH B 89 1189 226 HOH HOH . L 6 HOH B 90 1190 182 HOH HOH . L 6 HOH B 91 1191 87 HOH HOH . L 6 HOH B 92 1192 190 HOH HOH . L 6 HOH B 93 1193 218 HOH HOH . L 6 HOH B 94 1194 174 HOH HOH . L 6 HOH B 95 1195 181 HOH HOH . L 6 HOH B 96 1196 101 HOH HOH . L 6 HOH B 97 1197 157 HOH HOH . L 6 HOH B 98 1198 233 HOH HOH . L 6 HOH B 99 1199 252 HOH HOH . L 6 HOH B 100 1200 128 HOH HOH . L 6 HOH B 101 1201 6 HOH HOH . L 6 HOH B 102 1202 249 HOH HOH . L 6 HOH B 103 1203 59 HOH HOH . L 6 HOH B 104 1204 227 HOH HOH . L 6 HOH B 105 1205 225 HOH HOH . L 6 HOH B 106 1206 258 HOH HOH . L 6 HOH B 107 1207 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -2.475 18.987 61.191 1 24.43 ? C1 GOL 1003 A 1 HETATM 2 O O1 GOL . . . F 5 -1.336 18.106 61.17 1 23.8 ? O1 GOL 1003 A 1 HETATM 3 C C2 GOL . . . F 5 -3.77 18.285 61.564 1 25.32 ? C2 GOL 1003 A 1 HETATM 4 O O2 GOL . . . F 5 -4.889 19.077 61.172 1 25.55 ? O2 GOL 1003 A 1 HETATM 5 C C3 GOL . . . F 5 -3.829 18.064 63.101 1 26.85 ? C3 GOL 1003 A 1 HETATM 6 O O3 GOL . . . F 5 -4.669 16.939 63.423 1 27.63 ? O3 GOL 1003 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #