data_6FZI # _model_server_result.job_id cQumGVr5b72p20AYau9L4A _model_server_result.datetime_utc '2025-01-04 06:54:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":401}' # _entry.id 6FZI # _exptl.entry_id 6FZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.07 _cell.angle_gamma 90 _cell.entry_id 6FZI _cell.length_a 73.28 _cell.length_b 101.61 _cell.length_c 92.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 L N N ? 2 U N N ? 2 Z N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 256 n n PA O2A NAD sing 257 n n PA O5B NAD sing 258 n n PA O3 NAD sing 259 n n O2A HOA2 NAD sing 260 n n O5B C5B NAD sing 261 n n C5B C4B NAD sing 262 n n C5B H51A NAD sing 263 n n C5B H52A NAD sing 264 n n C4B O4B NAD sing 265 n n C4B C3B NAD sing 266 n n C4B H4B NAD sing 267 n n O4B C1B NAD sing 268 n n C3B O3B NAD sing 269 n n C3B C2B NAD sing 270 n n C3B H3B NAD sing 271 n n O3B HO3A NAD sing 272 n n C2B O2B NAD sing 273 n n C2B C1B NAD sing 274 n n C2B H2B NAD sing 275 n n O2B HO2A NAD sing 276 n n C1B N9A NAD sing 277 n n C1B H1B NAD sing 278 n n N9A C8A NAD sing 279 n y N9A C4A NAD sing 280 n y C8A N7A NAD doub 281 n y C8A H8A NAD sing 282 n n N7A C5A NAD sing 283 n y C5A C6A NAD sing 284 n y C5A C4A NAD doub 285 n y C6A N6A NAD sing 286 n n C6A N1A NAD doub 287 n y N6A H61A NAD sing 288 n n N6A H62A NAD sing 289 n n N1A C2A NAD sing 290 n y C2A N3A NAD doub 291 n y C2A H2A NAD sing 292 n n N3A C4A NAD sing 293 n y O3 PN NAD sing 294 n n PN O1N NAD doub 295 n n PN O2N NAD sing 296 n n PN O5D NAD sing 297 n n O5D C5D NAD sing 298 n n C5D C4D NAD sing 299 n n C5D H51N NAD sing 300 n n C5D H52N NAD sing 301 n n C4D O4D NAD sing 302 n n C4D C3D NAD sing 303 n n C4D H4D NAD sing 304 n n O4D C1D NAD sing 305 n n C3D O3D NAD sing 306 n n C3D C2D NAD sing 307 n n C3D H3D NAD sing 308 n n O3D HO3N NAD sing 309 n n C2D O2D NAD sing 310 n n C2D C1D NAD sing 311 n n C2D H2D NAD sing 312 n n O2D HO2N NAD sing 313 n n C1D N1N NAD sing 314 n n C1D H1D NAD sing 315 n n N1N C2N NAD sing 316 n y N1N C6N NAD doub 317 n y C2N C3N NAD doub 318 n y C2N H2N NAD sing 319 n n C3N C7N NAD sing 320 n n C3N C4N NAD sing 321 n y C7N O7N NAD doub 322 n n C7N N7N NAD sing 323 n n N7N H71N NAD sing 324 n n N7N H72N NAD sing 325 n n C4N C5N NAD doub 326 n y C4N H4N NAD sing 327 n n C5N C6N NAD sing 328 n y C5N H5N NAD sing 329 n n C6N H6N NAD sing 330 n n # _atom_sites.entry_id 6FZI _atom_sites.fract_transf_matrix[1][1] 0.013646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00419 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 401 401 NAD NAD . F 3 GOL A 1 402 3 GOL GOL . G 3 GOL A 1 403 5 GOL GOL . H 3 GOL A 1 404 13 GOL GOL . I 3 GOL A 1 405 15 GOL GOL . J 4 PEG A 1 406 1 PEG PEG . K 5 ACT A 1 407 5 ACT ACT . L 2 NAD B 1 401 401 NAD NAD . M 3 GOL B 1 402 2 GOL GOL . N 3 GOL B 1 403 8 GOL GOL . O 4 PEG B 1 404 2 PEG PEG . P 5 ACT B 1 405 2 ACT ACT . Q 5 ACT B 1 406 3 ACT ACT . R 5 ACT B 1 407 6 ACT ACT . S 5 ACT B 1 408 7 ACT ACT . T 5 ACT B 1 409 8 ACT ACT . U 2 NAD C 1 401 401 NAD NAD . V 3 GOL C 1 402 1 GOL GOL . W 3 GOL C 1 403 10 GOL GOL . X 3 GOL C 1 404 11 GOL GOL . Y 3 GOL C 1 405 14 GOL GOL . Z 2 NAD D 1 401 401 NAD NAD . AA 3 GOL D 1 402 9 GOL GOL . BA 5 ACT D 1 403 1 ACT ACT . CA 5 ACT D 1 404 4 ACT ACT . DA 5 ACT D 1 405 9 ACT ACT . EA 6 HOH A 1 501 13 HOH HOH . EA 6 HOH A 2 502 24 HOH HOH . EA 6 HOH A 3 503 5 HOH HOH . EA 6 HOH A 4 504 27 HOH HOH . EA 6 HOH A 5 505 2 HOH HOH . EA 6 HOH A 6 506 30 HOH HOH . EA 6 HOH A 7 507 12 HOH HOH . EA 6 HOH A 8 508 40 HOH HOH . EA 6 HOH A 9 509 42 HOH HOH . EA 6 HOH A 10 510 53 HOH HOH . EA 6 HOH A 11 511 20 HOH HOH . EA 6 HOH A 12 512 17 HOH HOH . EA 6 HOH A 13 513 51 HOH HOH . EA 6 HOH A 14 514 48 HOH HOH . EA 6 HOH A 15 515 56 HOH HOH . EA 6 HOH A 16 516 62 HOH HOH . EA 6 HOH A 17 517 22 HOH HOH . EA 6 HOH A 18 518 34 HOH HOH . EA 6 HOH A 19 519 21 HOH HOH . FA 6 HOH B 1 501 37 HOH HOH . FA 6 HOH B 2 502 31 HOH HOH . FA 6 HOH B 3 503 6 HOH HOH . FA 6 HOH B 4 504 4 HOH HOH . FA 6 HOH B 5 505 9 HOH HOH . FA 6 HOH B 6 506 7 HOH HOH . FA 6 HOH B 7 507 29 HOH HOH . FA 6 HOH B 8 508 3 HOH HOH . FA 6 HOH B 9 509 26 HOH HOH . FA 6 HOH B 10 510 25 HOH HOH . FA 6 HOH B 11 511 1 HOH HOH . FA 6 HOH B 12 512 60 HOH HOH . FA 6 HOH B 13 513 41 HOH HOH . FA 6 HOH B 14 514 14 HOH HOH . FA 6 HOH B 15 515 45 HOH HOH . FA 6 HOH B 16 516 47 HOH HOH . FA 6 HOH B 17 517 15 HOH HOH . FA 6 HOH B 18 518 36 HOH HOH . FA 6 HOH B 19 519 35 HOH HOH . FA 6 HOH B 20 520 10 HOH HOH . FA 6 HOH B 21 521 54 HOH HOH . FA 6 HOH B 22 522 23 HOH HOH . GA 6 HOH C 1 501 59 HOH HOH . GA 6 HOH C 2 502 44 HOH HOH . GA 6 HOH C 3 503 55 HOH HOH . GA 6 HOH C 4 504 28 HOH HOH . GA 6 HOH C 5 505 33 HOH HOH . GA 6 HOH C 6 506 46 HOH HOH . GA 6 HOH C 7 507 18 HOH HOH . GA 6 HOH C 8 508 38 HOH HOH . GA 6 HOH C 9 509 61 HOH HOH . GA 6 HOH C 10 510 52 HOH HOH . HA 6 HOH D 1 501 8 HOH HOH . HA 6 HOH D 2 502 32 HOH HOH . HA 6 HOH D 3 503 58 HOH HOH . HA 6 HOH D 4 504 19 HOH HOH . HA 6 HOH D 5 505 49 HOH HOH . HA 6 HOH D 6 506 16 HOH HOH . HA 6 HOH D 7 507 39 HOH HOH . HA 6 HOH D 8 508 50 HOH HOH . HA 6 HOH D 9 509 43 HOH HOH . HA 6 HOH D 10 510 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . Z 2 5 21.135 29.069 1 63.29 ? PA NAD 401 D 1 HETATM 2 O O1A NAD . . . Z 2 6.494 21.275 28.847 1 67.22 ? O1A NAD 401 D 1 HETATM 3 O O2A NAD . . . Z 2 4.134 20.378 28.09 1 61.21 ? O2A NAD 401 D 1 HETATM 4 O O5B NAD . . . Z 2 4.265 22.561 29.228 1 71.79 ? O5B NAD 401 D 1 HETATM 5 C C5B NAD . . . Z 2 5.01 23.763 29.332 1 70.94 ? C5B NAD 401 D 1 HETATM 6 C C4B NAD . . . Z 2 4.335 24.798 28.442 1 71.09 ? C4B NAD 401 D 1 HETATM 7 O O4B NAD . . . Z 2 4.566 26.082 29.003 1 67.53 ? O4B NAD 401 D 1 HETATM 8 C C3B NAD . . . Z 2 4.963 24.815 27.048 1 73.67 ? C3B NAD 401 D 1 HETATM 9 O O3B NAD . . . Z 2 3.929 24.808 26.051 1 73.71 ? O3B NAD 401 D 1 HETATM 10 C C2B NAD . . . Z 2 5.805 26.083 27.016 1 72.95 ? C2B NAD 401 D 1 HETATM 11 O O2B NAD . . . Z 2 5.859 26.644 25.696 1 72.28 ? O2B NAD 401 D 1 HETATM 12 C C1B NAD . . . Z 2 5.036 26.97 27.986 1 71.41 ? C1B NAD 401 D 1 HETATM 13 N N9A NAD . . . Z 2 5.852 28.028 28.625 1 67.85 ? N9A NAD 401 D 1 HETATM 14 C C8A NAD . . . Z 2 7.072 27.849 29.164 1 71.32 ? C8A NAD 401 D 1 HETATM 15 N N7A NAD . . . Z 2 7.549 29.01 29.681 1 75.45 ? N7A NAD 401 D 1 HETATM 16 C C5A NAD . . . Z 2 6.609 29.957 29.498 1 74.91 ? C5A NAD 401 D 1 HETATM 17 C C6A NAD . . . Z 2 6.472 31.398 29.818 1 77.58 ? C6A NAD 401 D 1 HETATM 18 N N6A NAD . . . Z 2 7.46 32.075 30.452 1 79.77 ? N6A NAD 401 D 1 HETATM 19 N N1A NAD . . . Z 2 5.327 32.015 29.452 1 78.92 ? N1A NAD 401 D 1 HETATM 20 C C2A NAD . . . Z 2 4.335 31.359 28.817 1 76.12 ? C2A NAD 401 D 1 HETATM 21 N N3A NAD . . . Z 2 4.391 30.051 28.491 1 76.66 ? N3A NAD 401 D 1 HETATM 22 C C4A NAD . . . Z 2 5.485 29.304 28.802 1 72.45 ? C4A NAD 401 D 1 HETATM 23 O O3 NAD . . . Z 2 4.9 20.567 30.573 1 69.3 ? O3 NAD 401 D 1 HETATM 24 P PN NAD . . . Z 2 3.606 20.119 31.415 1 62.25 ? PN NAD 401 D 1 HETATM 25 O O1N NAD . . . Z 2 3.871 18.635 31.573 1 61.56 ? O1N NAD 401 D 1 HETATM 26 O O2N NAD . . . Z 2 2.296 20.592 30.823 1 52.47 ? O2N NAD 401 D 1 HETATM 27 O O5D NAD . . . Z 2 3.908 20.824 32.832 1 57.68 ? O5D NAD 401 D 1 HETATM 28 C C5D NAD . . . Z 2 3.466 22.119 33.258 1 67.8 ? C5D NAD 401 D 1 HETATM 29 C C4D NAD . . . Z 2 3.438 22.16 34.789 1 70.68 ? C4D NAD 401 D 1 HETATM 30 O O4D NAD . . . Z 2 2.51 21.181 35.265 1 74.61 ? O4D NAD 401 D 1 HETATM 31 C C3D NAD . . . Z 2 4.804 21.78 35.343 1 69.1 ? C3D NAD 401 D 1 HETATM 32 O O3D NAD . . . Z 2 5.159 22.538 36.516 1 61.33 ? O3D NAD 401 D 1 HETATM 33 C C2D NAD . . . Z 2 4.597 20.34 35.76 1 65.06 ? C2D NAD 401 D 1 HETATM 34 O O2D NAD . . . Z 2 5.51 19.9 36.755 1 70.17 ? O2D NAD 401 D 1 HETATM 35 C C1D NAD . . . Z 2 3.153 20.334 36.213 1 71.19 ? C1D NAD 401 D 1 HETATM 36 N N1N NAD . . . Z 2 2.601 18.974 36.218 1 76.35 ? N1N NAD 401 D 1 HETATM 37 C C2N NAD . . . Z 2 2.795 18.154 35.176 1 74.15 ? C2N NAD 401 D 1 HETATM 38 C C3N NAD . . . Z 2 2.269 16.864 35.194 1 75.81 ? C3N NAD 401 D 1 HETATM 39 C C7N NAD . . . Z 2 2.499 15.941 34.034 1 67.29 ? C7N NAD 401 D 1 HETATM 40 O O7N NAD . . . Z 2 2.513 14.73 34.23 1 62.4 ? O7N NAD 401 D 1 HETATM 41 N N7N NAD . . . Z 2 2.652 16.485 32.826 1 56.55 ? N7N NAD 401 D 1 HETATM 42 C C4N NAD . . . Z 2 1.573 16.411 36.313 1 79.23 ? C4N NAD 401 D 1 HETATM 43 C C5N NAD . . . Z 2 1.389 17.279 37.377 1 79.89 ? C5N NAD 401 D 1 HETATM 44 C C6N NAD . . . Z 2 1.925 18.561 37.307 1 76.12 ? C6N NAD 401 D 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #