data_6FZN # _model_server_result.job_id bm-yOS5xPCWGFnn8zMDnrQ _model_server_result.datetime_utc '2024-12-02 00:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fzn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6FZN # _exptl.entry_id 6FZN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 586.678 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-[[(3~{R},4~{R})-3-ethenyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.04 _cell.angle_gamma 90 _cell.entry_id 6FZN _cell.length_a 42.55 _cell.length_b 57.96 _cell.length_c 52.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FZN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 52 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 52 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAB _struct_conn.ptnr2_label_comp_id 9UY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 9UY _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.63 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H38 N4 O6' _chem_comp.formula_weight 586.678 _chem_comp.id 9UY _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-[[(3~{R},4~{R})-3-ethenyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Billeverdin IXa, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1D CGD 9UY doub 1 n n O2A CGA 9UY doub 2 n n CGD O2D 9UY sing 3 n n CGD CBD 9UY sing 4 n n CAD CBD 9UY sing 5 n n CAD C3D 9UY sing 6 n n CGA O1A 9UY sing 7 n n CGA CBA 9UY sing 8 n n CAA CBA 9UY sing 9 n n CAA C2A 9UY sing 10 n n C3D C2D 9UY sing 11 n y C3D C4D 9UY doub 12 n y CMD C2D 9UY sing 13 n n CHA C4D 9UY sing 14 n n CHA C1A 9UY sing 15 n n C2D C1D 9UY doub 16 n y C2A C1A 9UY doub 17 n y C2A C3A 9UY sing 18 n y C4D ND 9UY sing 19 n y C1A NA 9UY sing 20 n y CMA C3A 9UY sing 21 n n C3A C4A 9UY doub 22 n y C1D ND 9UY sing 23 n y C1D CHD 9UY sing 24 n n NA C4A 9UY sing 25 n y CHD C4C 9UY sing 26 n n C4A CHB 9UY sing 27 n n CHB C1B 9UY sing 28 n n C4C C3C 9UY sing 29 n n C4C NC 9UY doub 30 n n C3C CAC 9UY sing 31 n n C3C C2C 9UY sing 32 n n NC C1C 9UY sing 33 n n C1B NB 9UY doub 34 n n C1B C2B 9UY sing 35 n n NB C4B 9UY sing 36 n n CAC CBC 9UY doub 37 n n CMC C2C 9UY sing 38 n n C2C C1C 9UY sing 39 n n C2B CMB 9UY sing 40 n n C2B C3B 9UY doub 41 n n C4B OB 9UY doub 42 n n C4B C3B 9UY sing 43 n n C1C OC 9UY doub 44 n n C3B CAB 9UY sing 45 n n CAB CBB 9UY doub 46 n n O2D H1 9UY sing 47 n n CBD H2 9UY sing 48 n n CBD H3 9UY sing 49 n n CAD H4 9UY sing 50 n n CAD H5 9UY sing 51 n n CMD H6 9UY sing 52 n n CMD H7 9UY sing 53 n n CMD H8 9UY sing 54 n n CHD H9 9UY sing 55 n n CHD H10 9UY sing 56 n n C3C H11 9UY sing 57 n n CAC H12 9UY sing 58 n n CBC H13 9UY sing 59 n n CBC H14 9UY sing 60 n n C2C H15 9UY sing 61 n n CMC H16 9UY sing 62 n n CMC H17 9UY sing 63 n n CMC H18 9UY sing 64 n n ND H19 9UY sing 65 n n CHA H20 9UY sing 66 n n CHA H21 9UY sing 67 n n CAA H22 9UY sing 68 n n CAA H23 9UY sing 69 n n CBA H24 9UY sing 70 n n CBA H25 9UY sing 71 n n O1A H26 9UY sing 72 n n CMA H27 9UY sing 73 n n CMA H28 9UY sing 74 n n CMA H29 9UY sing 75 n n NA H30 9UY sing 76 n n CHB H31 9UY sing 77 n n CHB H32 9UY sing 78 n n CMB H33 9UY sing 79 n n CMB H34 9UY sing 80 n n CMB H35 9UY sing 81 n n CAB H36 9UY sing 82 n n CBB H37 9UY sing 83 n n CBB H38 9UY sing 84 n n # _atom_sites.entry_id 6FZN _atom_sites.fract_transf_matrix[1][1] 0.023502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006316 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9UY A 1 201 201 9UY CYC . D 3 HOH A 1 301 38 HOH HOH . D 3 HOH A 2 302 5 HOH HOH . D 3 HOH A 3 303 28 HOH HOH . D 3 HOH A 4 304 34 HOH HOH . D 3 HOH A 5 305 7 HOH HOH . D 3 HOH A 6 306 17 HOH HOH . D 3 HOH A 7 307 30 HOH HOH . E 3 HOH B 1 201 36 HOH HOH . E 3 HOH B 2 202 32 HOH HOH . E 3 HOH B 3 203 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2D 9UY . . . C 2 -0.567 -14.994 15.857 1 85.18 ? O2D 9UY 201 A 1 HETATM 2 C CGD 9UY . . . C 2 -0.375 -13.777 15.678 1 82 ? CGD 9UY 201 A 1 HETATM 3 O O1D 9UY . . . C 2 0.606 -13.187 16.176 1 86.53 ? O1D 9UY 201 A 1 HETATM 4 C CBD 9UY . . . C 2 -1.355 -12.997 14.826 1 81.66 ? CBD 9UY 201 A 1 HETATM 5 C CAD 9UY . . . C 2 -2.398 -12.256 15.662 1 80.62 ? CAD 9UY 201 A 1 HETATM 6 C C3D 9UY . . . C 2 -1.738 -11.339 16.67 1 81.29 ? C3D 9UY 201 A 1 HETATM 7 C C2D 9UY . . . C 2 -1.305 -9.949 16.458 1 77.87 ? C2D 9UY 201 A 1 HETATM 8 C CMD 9UY . . . C 2 -1.51 -9.202 15.162 1 78.13 ? CMD 9UY 201 A 1 HETATM 9 C C1D 9UY . . . C 2 -0.726 -9.552 17.786 1 75.17 ? C1D 9UY 201 A 1 HETATM 10 C CHD 9UY . . . C 2 0.018 -8.295 18.125 1 73.01 ? CHD 9UY 201 A 1 HETATM 11 C C4C 9UY . . . C 2 0.939 -7.728 17.273 1 70.13 ? C4C 9UY 201 A 1 HETATM 12 C C3C 9UY . . . C 2 1.816 -6.524 17.61 1 71.59 ? C3C 9UY 201 A 1 HETATM 13 C CAC 9UY . . . C 2 1.181 -5.372 18.4 1 73.05 ? CAC 9UY 201 A 1 HETATM 14 C CBC 9UY . . . C 2 2.224 -4.697 19.26 1 75.16 ? CBC 9UY 201 A 1 HETATM 15 C C2C 9UY . . . C 2 2.304 -6.05 16.228 1 73.15 ? C2C 9UY 201 A 1 HETATM 16 C CMC 9UY . . . C 2 3.722 -5.499 16.068 1 75.28 ? CMC 9UY 201 A 1 HETATM 17 C C1C 9UY . . . C 2 2.053 -7.253 15.383 1 71.18 ? C1C 9UY 201 A 1 HETATM 18 O OC 9UY . . . C 2 2.616 -7.485 14.324 1 68.05 ? OC 9UY 201 A 1 HETATM 19 N NC 9UY . . . C 2 1.175 -8.033 15.994 1 70.28 ? NC 9UY 201 A 1 HETATM 20 C C4D 9UY . . . C 2 -1.361 -11.616 18.078 1 81.38 ? C4D 9UY 201 A 1 HETATM 21 N ND 9UY . . . C 2 -0.763 -10.565 18.69 1 76.98 ? ND 9UY 201 A 1 HETATM 22 C CHA 9UY . . . C 2 -1.638 -12.943 18.712 1 85.73 ? CHA 9UY 201 A 1 HETATM 23 C C1A 9UY . . . C 2 -1.512 -13.313 20.149 1 86.21 ? C1A 9UY 201 A 1 HETATM 24 C C2A 9UY . . . C 2 -1.785 -14.599 20.866 1 87.88 ? C2A 9UY 201 A 1 HETATM 25 C CAA 9UY . . . C 2 -2.319 -15.936 20.386 1 89.84 ? CAA 9UY 201 A 1 HETATM 26 C CBA 9UY . . . C 2 -2.511 -16.058 18.883 1 89.89 ? CBA 9UY 201 A 1 HETATM 27 C CGA 9UY . . . C 2 -3.114 -17.397 18.538 1 93.25 ? CGA 9UY 201 A 1 HETATM 28 O O2A 9UY . . . C 2 -2.443 -18.191 17.844 1 92.84 ? O2A 9UY 201 A 1 HETATM 29 O O1A 9UY . . . C 2 -4.267 -17.649 18.956 1 92.21 ? O1A 9UY 201 A 1 HETATM 30 C C3A 9UY . . . C 2 -1.421 -14.291 22.284 1 88.24 ? C3A 9UY 201 A 1 HETATM 31 C CMA 9UY . . . C 2 -1.52 -15.274 23.421 1 88.24 ? CMA 9UY 201 A 1 HETATM 32 C C4A 9UY . . . C 2 -0.963 -12.863 22.216 1 89.09 ? C4A 9UY 201 A 1 HETATM 33 N NA 9UY . . . C 2 -1.052 -12.363 20.963 1 88.94 ? NA 9UY 201 A 1 HETATM 34 C CHB 9UY . . . C 2 -0.47 -11.751 23.083 1 89.38 ? CHB 9UY 201 A 1 HETATM 35 C C1B 9UY . . . C 2 -0.216 -11.472 24.521 1 88.76 ? C1B 9UY 201 A 1 HETATM 36 C C2B 9UY . . . C 2 -0.269 -12.2 25.83 1 91.17 ? C2B 9UY 201 A 1 HETATM 37 C CMB 9UY . . . C 2 -0.668 -13.609 26.16 1 92.17 ? CMB 9UY 201 A 1 HETATM 38 C C3B 9UY . . . C 2 0.179 -11.166 26.814 1 93.85 ? C3B 9UY 201 A 1 HETATM 39 C CAB 9UY . . . C 2 0.365 -11.281 28.316 1 94.46 ? CAB 9UY 201 A 1 HETATM 40 C CBB 9UY . . . C 2 -0.542 -10.327 29.069 1 96.02 ? CBB 9UY 201 A 1 HETATM 41 C C4B 9UY . . . C 2 0.43 -9.989 25.944 1 95.06 ? C4B 9UY 201 A 1 HETATM 42 O OB 9UY . . . C 2 0.855 -8.849 26.378 1 102.94 ? OB 9UY 201 A 1 HETATM 43 N NB 9UY . . . C 2 0.206 -10.195 24.653 1 92.71 ? NB 9UY 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #