data_6FZP
#
_model_server_result.job_id            6_v70t-DlA0Rn-uv0rqkYg 
_model_server_result.datetime_utc      '2024-11-18 09:47:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fzp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":550}' 
#
_entry.id    6FZP 
#
_exptl.entry_id    6FZP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              495.569 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6FZP 
_cell.length_a            53.592 
_cell.length_b            86.268 
_cell.length_c            122.693 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FZP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H29 N3 O4' 
_chem_comp.formula_weight    495.569 
_chem_comp.id                EDK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 EDK sing 83 n n 
C2 O EDK sing 84 n n 
C24 C23 EDK doub 85 n y 
C24 C3 EDK sing 86 n y 
C1 N EDK sing 87 n n 
C23 C6 EDK sing 88 n y 
O C3 EDK sing 89 n n 
C3 C4 EDK doub 90 n y 
C6 C7 EDK sing 91 n n 
C6 C5 EDK doub 92 n y 
C4 C5 EDK sing 93 n y 
C7 C8 EDK sing 94 n n 
N C EDK sing 95 n n 
N C25 EDK sing 96 n n 
N2 C25 EDK doub 97 n y 
N2 C26 EDK sing 98 n y 
O2 C22 EDK doub 99 n n 
C25 C29 EDK sing 100 n y 
C26 C27 EDK doub 101 n y 
C8 C22 EDK sing 102 n n 
C8 N1 EDK sing 103 n n 
C22 O3 EDK sing 104 n n 
N1 C9 EDK sing 105 n n 
C29 C28 EDK doub 106 n y 
C27 C28 EDK sing 107 n y 
O1 C15 EDK doub 108 n n 
C9 C14 EDK doub 109 n y 
C9 C10 EDK sing 110 n y 
C14 C13 EDK sing 111 n y 
C15 C10 EDK sing 112 n n 
C15 C16 EDK sing 113 n n 
C10 C11 EDK doub 114 n y 
C21 C16 EDK doub 115 n y 
C21 C20 EDK sing 116 n y 
C13 C12 EDK doub 117 n y 
C16 C17 EDK sing 118 n y 
C20 C19 EDK doub 119 n y 
C11 C12 EDK sing 120 n y 
C17 C18 EDK doub 121 n y 
C19 C18 EDK sing 122 n y 
O3 H1 EDK sing 123 n n 
C4 H2 EDK sing 124 n n 
C5 H3 EDK sing 125 n n 
N1 H4 EDK sing 126 n n 
C7 H5 EDK sing 127 n n 
C7 H6 EDK sing 128 n n 
C8 H7 EDK sing 129 n n 
C11 H8 EDK sing 130 n n 
C12 H9 EDK sing 131 n n 
C13 H10 EDK sing 132 n n 
C14 H11 EDK sing 133 n n 
C21 H12 EDK sing 134 n n 
C20 H13 EDK sing 135 n n 
C19 H14 EDK sing 136 n n 
C18 H15 EDK sing 137 n n 
C17 H16 EDK sing 138 n n 
C23 H17 EDK sing 139 n n 
C24 H18 EDK sing 140 n n 
C2 H19 EDK sing 141 n n 
C2 H20 EDK sing 142 n n 
C1 H21 EDK sing 143 n n 
C1 H22 EDK sing 144 n n 
C H23 EDK sing 145 n n 
C H24 EDK sing 146 n n 
C H25 EDK sing 147 n n 
C29 H26 EDK sing 148 n n 
C28 H27 EDK sing 149 n n 
C27 H28 EDK sing 150 n n 
C26 H29 EDK sing 151 n n 
#
_atom_sites.entry_id                     6FZP 
_atom_sites.fract_transf_matrix[1][1]    0.01866 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011592 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00815 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDK A 1 550 550 EDK EDK . 
D 4 HOH A 1 601 601 HOH HOH . 
D 4 HOH A 2 602 602 HOH HOH . 
D 4 HOH A 3 603 603 HOH HOH . 
D 4 HOH A 4 604 604 HOH HOH . 
D 4 HOH A 5 605 605 HOH HOH . 
D 4 HOH A 6 606 606 HOH HOH . 
D 4 HOH A 7 607 607 HOH HOH . 
D 4 HOH A 8 608 608 HOH HOH . 
D 4 HOH A 9 609 609 HOH HOH . 
D 4 HOH A 10 610 610 HOH HOH . 
D 4 HOH A 11 611 611 HOH HOH . 
D 4 HOH A 12 612 612 HOH HOH . 
D 4 HOH A 13 613 613 HOH HOH . 
D 4 HOH A 14 614 614 HOH HOH . 
D 4 HOH A 15 615 615 HOH HOH . 
D 4 HOH A 16 616 616 HOH HOH . 
D 4 HOH A 17 617 617 HOH HOH . 
D 4 HOH A 18 618 618 HOH HOH . 
D 4 HOH A 19 619 619 HOH HOH . 
D 4 HOH A 20 620 620 HOH HOH . 
D 4 HOH A 21 621 621 HOH HOH . 
D 4 HOH A 22 622 622 HOH HOH . 
D 4 HOH A 23 623 623 HOH HOH . 
D 4 HOH A 24 624 624 HOH HOH . 
D 4 HOH A 25 625 625 HOH HOH . 
D 4 HOH A 26 626 626 HOH HOH . 
D 4 HOH A 27 627 627 HOH HOH . 
D 4 HOH A 28 628 628 HOH HOH . 
D 4 HOH A 29 629 629 HOH HOH . 
D 4 HOH A 30 630 630 HOH HOH . 
D 4 HOH A 31 631 631 HOH HOH . 
D 4 HOH A 32 632 632 HOH HOH . 
D 4 HOH A 33 633 633 HOH HOH . 
D 4 HOH A 34 634 634 HOH HOH . 
D 4 HOH A 35 635 635 HOH HOH . 
D 4 HOH A 36 636 636 HOH HOH . 
D 4 HOH A 37 637 637 HOH HOH . 
D 4 HOH A 38 638 638 HOH HOH . 
D 4 HOH A 39 639 639 HOH HOH . 
D 4 HOH A 40 640 640 HOH HOH . 
D 4 HOH A 41 641 641 HOH HOH . 
D 4 HOH A 42 642 642 HOH HOH . 
D 4 HOH A 43 643 643 HOH HOH . 
D 4 HOH A 44 644 644 HOH HOH . 
D 4 HOH A 45 645 645 HOH HOH . 
E 4 HOH C 1 201 201 HOH HOH . 
E 4 HOH C 2 202 202 HOH HOH . 
E 4 HOH C 3 203 203 HOH HOH . 
E 4 HOH C 4 205 205 HOH HOH . 
E 4 HOH C 5 206 206 HOH HOH . 
E 4 HOH C 6 207 207 HOH HOH . 
E 4 HOH C 7 208 208 HOH HOH . 
E 4 HOH C 8 211 211 HOH HOH . 
E 4 HOH C 9 213 213 HOH HOH . 
E 4 HOH C 10 214 214 HOH HOH . 
E 4 HOH C 11 215 215 HOH HOH . 
E 4 HOH C 12 216 216 HOH HOH . 
E 4 HOH C 13 217 217 HOH HOH . 
E 4 HOH C 14 218 218 HOH HOH . 
E 4 HOH C 15 219 219 HOH HOH . 
E 4 HOH C 16 220 220 HOH HOH . 
E 4 HOH C 17 221 221 HOH HOH . 
E 4 HOH C 18 224 224 HOH HOH . 
E 4 HOH C 19 225 225 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 EDK . . . C 3 -19.268 -20.333 15.655 1 86.5 ? O3 EDK 550 A 1 
HETATM 2 C C4 EDK . . . C 3 -24.558 -18.468 12.409 1 53.58 ? C4 EDK 550 A 1 
HETATM 3 C C5 EDK . . . C 3 -23.5 -18.564 13.295 1 54.05 ? C5 EDK 550 A 1 
HETATM 4 C C6 EDK . . . C 3 -22.218 -18.194 12.92 1 62.4 ? C6 EDK 550 A 1 
HETATM 5 N N1 EDK . . . C 3 -20.904 -20.713 13.403 1 73.84 ? N1 EDK 550 A 1 
HETATM 6 C C7 EDK . . . C 3 -21.065 -18.315 13.888 1 73.55 ? C7 EDK 550 A 1 
HETATM 7 C C8 EDK . . . C 3 -20.135 -19.496 13.575 1 76.26 ? C8 EDK 550 A 1 
HETATM 8 N N2 EDK . . . C 3 -25.28 -19.004 5.983 1 73.81 ? N2 EDK 550 A 1 
HETATM 9 C C9 EDK . . . C 3 -20.392 -21.893 12.922 1 78.78 ? C9 EDK 550 A 1 
HETATM 10 C C10 EDK . . . C 3 -21.291 -22.958 12.715 1 83.08 ? C10 EDK 550 A 1 
HETATM 11 C C11 EDK . . . C 3 -20.812 -24.148 12.169 1 86.55 ? C11 EDK 550 A 1 
HETATM 12 C C12 EDK . . . C 3 -19.475 -24.282 11.843 1 81.97 ? C12 EDK 550 A 1 
HETATM 13 C C13 EDK . . . C 3 -18.599 -23.24 12.054 1 85.7 ? C13 EDK 550 A 1 
HETATM 14 C C14 EDK . . . C 3 -19.048 -22.047 12.59 1 81.23 ? C14 EDK 550 A 1 
HETATM 15 C C15 EDK . . . C 3 -22.739 -22.836 13.057 1 82 ? C15 EDK 550 A 1 
HETATM 16 C C22 EDK . . . C 3 -19.092 -19.651 14.668 1 82.55 ? C22 EDK 550 A 1 
HETATM 17 O O2 EDK . . . C 3 -17.998 -18.985 14.418 1 88.12 ? O2 EDK 550 A 1 
HETATM 18 C C16 EDK . . . C 3 -23.692 -23.943 12.747 1 85.16 ? C16 EDK 550 A 1 
HETATM 19 C C21 EDK . . . C 3 -23.577 -25.188 13.358 1 89.85 ? C21 EDK 550 A 1 
HETATM 20 C C20 EDK . . . C 3 -24.489 -26.19 13.077 1 90.95 ? C20 EDK 550 A 1 
HETATM 21 C C19 EDK . . . C 3 -25.523 -25.964 12.194 1 87.23 ? C19 EDK 550 A 1 
HETATM 22 C C18 EDK . . . C 3 -25.645 -24.734 11.585 1 85.79 ? C18 EDK 550 A 1 
HETATM 23 C C17 EDK . . . C 3 -24.736 -23.726 11.855 1 85.81 ? C17 EDK 550 A 1 
HETATM 24 O O1 EDK . . . C 3 -23.147 -21.808 13.583 1 90.65 ? O1 EDK 550 A 1 
HETATM 25 C C23 EDK . . . C 3 -22.018 -17.717 11.634 1 65.61 ? C23 EDK 550 A 1 
HETATM 26 C C24 EDK . . . C 3 -23.068 -17.616 10.738 1 56.51 ? C24 EDK 550 A 1 
HETATM 27 C C3 EDK . . . C 3 -24.34 -17.996 11.127 1 62.58 ? C3 EDK 550 A 1 
HETATM 28 O O EDK . . . C 3 -25.394 -17.945 10.253 1 72.79 ? O EDK 550 A 1 
HETATM 29 C C2 EDK . . . C 3 -25.143 -17.492 8.915 1 64.37 ? C2 EDK 550 A 1 
HETATM 30 C C1 EDK . . . C 3 -26.452 -17.54 8.167 1 57.12 ? C1 EDK 550 A 1 
HETATM 31 N N EDK . . . C 3 -26.83 -18.921 7.807 1 59.05 ? N EDK 550 A 1 
HETATM 32 C C EDK . . . C 3 -27.52 -19.716 8.818 1 60.84 ? C EDK 550 A 1 
HETATM 33 C C25 EDK . . . C 3 -26.106 -19.66 6.808 1 57.77 ? C25 EDK 550 A 1 
HETATM 34 C C29 EDK . . . C 3 -26.336 -21.03 6.737 1 56.72 ? C29 EDK 550 A 1 
HETATM 35 C C28 EDK . . . C 3 -25.677 -21.739 5.749 1 63.5 ? C28 EDK 550 A 1 
HETATM 36 C C27 EDK . . . C 3 -24.829 -21.085 4.883 1 59.78 ? C27 EDK 550 A 1 
HETATM 37 C C26 EDK . . . C 3 -24.661 -19.727 5.036 1 65.15 ? C26 EDK 550 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           701 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           37 
#