data_6FZR # _model_server_result.job_id wP0XISLmdRJTDXI8F9bjAw _model_server_result.datetime_utc '2024-11-24 03:03:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":101}' # _entry.id 6FZR # _exptl.entry_id 6FZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.198 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-deoxy-2-[(fluoroacetyl)amino]-alpha-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FZR _cell.length_a 35.274 _cell.length_b 69.431 _cell.length_c 90.778 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 156 H CYS 1029 1_555 A SG CYS 224 H CYS 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? covale ? covale1 B OG1 THR 4 P THR 4 1_555 K C1 EEQ . P EEQ 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H14 F N O6' _chem_comp.formula_weight 239.198 _chem_comp.id EEQ _chem_comp.mon_nstd_flag n _chem_comp.name 2-deoxy-2-[(fluoroacetyl)amino]-alpha-D-galactopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 2-fluoranyl-~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]ethanamide;2-deoxy-2-[(fluoroacetyl)amino]-alpha-D-galactose;2-deoxy-2-[(fluoroacetyl)amino]-D-galactose;2-deoxy-2-[(fluoroacetyl)amino]-galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F23 C8 EEQ sing 92 n n C8 C7 EEQ sing 93 n n C7 N2 EEQ sing 94 n n C7 O7 EEQ doub 95 n n N2 C2 EEQ sing 96 n n O3 C3 EEQ sing 97 n n C3 C2 EEQ sing 98 n n C3 C4 EEQ sing 99 n n C2 C1 EEQ sing 100 n n C1 O5 EEQ sing 101 n n C4 C5 EEQ sing 102 n n C4 O4 EEQ sing 103 n n C5 O5 EEQ sing 104 n n C5 C6 EEQ sing 105 n n C6 O6 EEQ sing 106 n n C1 O1 EEQ sing 107 n n C8 H81 EEQ sing 108 n n C8 H82 EEQ sing 109 n n N2 HN2 EEQ sing 110 n n C2 H2 EEQ sing 111 n n C1 H1 EEQ sing 112 n n C5 H5 EEQ sing 113 n n C6 H61 EEQ sing 114 n n C6 H62 EEQ sing 115 n n O6 HO6 EEQ sing 116 n n C4 H4 EEQ sing 117 n n O4 HO4 EEQ sing 118 n n C3 H3 EEQ sing 119 n n O3 HO3 EEQ sing 120 n n O1 HO1 EEQ sing 121 n n # _atom_sites.entry_id 6FZR _atom_sites.fract_transf_matrix[1][1] 0.028349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO H 1 1201 1 EDO EDO . D 3 EDO H 1 1202 2 EDO EDO . E 3 EDO H 1 1203 3 EDO EDO . F 3 EDO H 1 1204 4 EDO EDO . G 3 EDO H 1 1205 5 EDO EDO . H 3 EDO H 1 1206 6 EDO EDO . I 3 EDO H 1 1207 7 EDO EDO . J 3 EDO H 1 1208 8 EDO EDO . K 4 EEQ P 1 101 1 EEQ 0VA . L 5 HOH H 1 1301 171 HOH HOH . L 5 HOH H 2 1302 9 HOH HOH . L 5 HOH H 3 1303 176 HOH HOH . L 5 HOH H 4 1304 29 HOH HOH . L 5 HOH H 5 1305 45 HOH HOH . L 5 HOH H 6 1306 119 HOH HOH . L 5 HOH H 7 1307 4 HOH HOH . L 5 HOH H 8 1308 82 HOH HOH . L 5 HOH H 9 1309 5 HOH HOH . L 5 HOH H 10 1310 56 HOH HOH . L 5 HOH H 11 1311 42 HOH HOH . L 5 HOH H 12 1312 11 HOH HOH . L 5 HOH H 13 1313 74 HOH HOH . L 5 HOH H 14 1314 23 HOH HOH . L 5 HOH H 15 1315 68 HOH HOH . L 5 HOH H 16 1316 16 HOH HOH . L 5 HOH H 17 1317 69 HOH HOH . L 5 HOH H 18 1318 92 HOH HOH . L 5 HOH H 19 1319 149 HOH HOH . L 5 HOH H 20 1320 93 HOH HOH . L 5 HOH H 21 1321 2 HOH HOH . L 5 HOH H 22 1322 77 HOH HOH . L 5 HOH H 23 1323 84 HOH HOH . L 5 HOH H 24 1324 26 HOH HOH . L 5 HOH H 25 1325 117 HOH HOH . L 5 HOH H 26 1326 100 HOH HOH . L 5 HOH H 27 1327 50 HOH HOH . L 5 HOH H 28 1328 179 HOH HOH . L 5 HOH H 29 1329 38 HOH HOH . L 5 HOH H 30 1330 97 HOH HOH . L 5 HOH H 31 1331 57 HOH HOH . L 5 HOH H 32 1332 78 HOH HOH . L 5 HOH H 33 1333 47 HOH HOH . L 5 HOH H 34 1334 22 HOH HOH . L 5 HOH H 35 1335 15 HOH HOH . L 5 HOH H 36 1336 36 HOH HOH . L 5 HOH H 37 1337 28 HOH HOH . L 5 HOH H 38 1338 37 HOH HOH . L 5 HOH H 39 1339 60 HOH HOH . L 5 HOH H 40 1340 1 HOH HOH . L 5 HOH H 41 1341 63 HOH HOH . L 5 HOH H 42 1342 178 HOH HOH . L 5 HOH H 43 1343 83 HOH HOH . L 5 HOH H 44 1344 18 HOH HOH . L 5 HOH H 45 1345 46 HOH HOH . L 5 HOH H 46 1346 141 HOH HOH . L 5 HOH H 47 1347 25 HOH HOH . L 5 HOH H 48 1348 44 HOH HOH . L 5 HOH H 49 1349 19 HOH HOH . L 5 HOH H 50 1350 72 HOH HOH . L 5 HOH H 51 1351 27 HOH HOH . L 5 HOH H 52 1352 40 HOH HOH . L 5 HOH H 53 1353 123 HOH HOH . L 5 HOH H 54 1354 17 HOH HOH . L 5 HOH H 55 1355 76 HOH HOH . L 5 HOH H 56 1356 181 HOH HOH . L 5 HOH H 57 1357 106 HOH HOH . L 5 HOH H 58 1358 61 HOH HOH . L 5 HOH H 59 1359 52 HOH HOH . L 5 HOH H 60 1360 64 HOH HOH . L 5 HOH H 61 1361 73 HOH HOH . L 5 HOH H 62 1362 133 HOH HOH . L 5 HOH H 63 1363 59 HOH HOH . L 5 HOH H 64 1364 14 HOH HOH . L 5 HOH H 65 1365 13 HOH HOH . L 5 HOH H 66 1366 33 HOH HOH . L 5 HOH H 67 1367 8 HOH HOH . L 5 HOH H 68 1368 139 HOH HOH . L 5 HOH H 69 1369 12 HOH HOH . L 5 HOH H 70 1370 103 HOH HOH . L 5 HOH H 71 1371 166 HOH HOH . L 5 HOH H 72 1372 87 HOH HOH . L 5 HOH H 73 1373 144 HOH HOH . L 5 HOH H 74 1374 159 HOH HOH . L 5 HOH H 75 1375 175 HOH HOH . L 5 HOH H 76 1376 127 HOH HOH . L 5 HOH H 77 1377 153 HOH HOH . L 5 HOH H 78 1378 177 HOH HOH . L 5 HOH H 79 1379 80 HOH HOH . L 5 HOH H 80 1380 170 HOH HOH . L 5 HOH H 81 1381 53 HOH HOH . L 5 HOH H 82 1382 98 HOH HOH . L 5 HOH H 83 1383 174 HOH HOH . L 5 HOH H 84 1384 151 HOH HOH . L 5 HOH H 85 1385 10 HOH HOH . L 5 HOH H 86 1386 173 HOH HOH . L 5 HOH H 87 1387 155 HOH HOH . L 5 HOH H 88 1388 167 HOH HOH . L 5 HOH H 89 1389 180 HOH HOH . L 5 HOH H 90 1390 35 HOH HOH . L 5 HOH H 91 1391 51 HOH HOH . M 5 HOH P 1 201 169 HOH HOH . M 5 HOH P 2 202 43 HOH HOH . M 5 HOH P 3 203 21 HOH HOH . M 5 HOH P 4 204 111 HOH HOH . M 5 HOH P 5 205 125 HOH HOH . M 5 HOH P 6 206 79 HOH HOH . M 5 HOH P 7 207 145 HOH HOH . M 5 HOH P 8 208 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 EEQ . . . K 4 -22.458 14.634 -3.887 1 77.19 ? C8 EEQ 101 P 1 HETATM 2 F F23 EEQ . . . K 4 -23.067 13.706 -4.13 1 79.47 ? F23 EEQ 101 P 1 HETATM 3 C C7 EEQ . . . K 4 -21.914 14.477 -2.499 1 76.42 ? C7 EEQ 101 P 1 HETATM 4 O O7 EEQ . . . K 4 -22.665 14.359 -1.544 1 73.77 ? O7 EEQ 101 P 1 HETATM 5 N N2 EEQ . . . K 4 -20.59 14.49 -2.449 1 75.24 ? N2 EEQ 101 P 1 HETATM 6 C C2 EEQ . . . K 4 -19.846 14.315 -1.223 1 76.01 ? C2 EEQ 101 P 1 HETATM 7 C C1 EEQ . . . K 4 -19.358 12.882 -1.062 1 77.23 ? C1 EEQ 101 P 1 HETATM 8 O O5 EEQ . . . K 4 -18.844 12.816 0.264 1 74.44 ? O5 EEQ 101 P 1 HETATM 9 C C5 EEQ . . . K 4 -17.664 13.534 0.188 1 71.69 ? C5 EEQ 101 P 1 HETATM 10 C C6 EEQ . . . K 4 -16.74 13.325 1.39 1 72.24 ? C6 EEQ 101 P 1 HETATM 11 O O6 EEQ . . . K 4 -16.459 11.949 1.631 1 68.08 ? O6 EEQ 101 P 1 HETATM 12 C C4 EEQ . . . K 4 -17.98 15.012 0.019 1 73.31 ? C4 EEQ 101 P 1 HETATM 13 O O4 EEQ . . . K 4 -18.823 15.51 1.048 1 70.92 ? O4 EEQ 101 P 1 HETATM 14 C C3 EEQ . . . K 4 -18.667 15.181 -1.277 1 73.85 ? C3 EEQ 101 P 1 HETATM 15 O O3 EEQ . . . K 4 -19.08 16.489 -1.451 1 73.37 ? O3 EEQ 101 P 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #