data_6FZR # _model_server_result.job_id qH10jwKUgWovcSRmzct3_A _model_server_result.datetime_utc '2024-11-04 22:21:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1208}' # _entry.id 6FZR # _exptl.entry_id 6FZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FZR _cell.length_a 35.274 _cell.length_b 69.431 _cell.length_c 90.778 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 156 H CYS 1029 1_555 A SG CYS 224 H CYS 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? covale ? covale1 B OG1 THR 4 P THR 4 1_555 K C1 EEQ . P EEQ 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6FZR _atom_sites.fract_transf_matrix[1][1] 0.028349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO H 1 1201 1 EDO EDO . D 3 EDO H 1 1202 2 EDO EDO . E 3 EDO H 1 1203 3 EDO EDO . F 3 EDO H 1 1204 4 EDO EDO . G 3 EDO H 1 1205 5 EDO EDO . H 3 EDO H 1 1206 6 EDO EDO . I 3 EDO H 1 1207 7 EDO EDO . J 3 EDO H 1 1208 8 EDO EDO . K 4 EEQ P 1 101 1 EEQ 0VA . L 5 HOH H 1 1301 171 HOH HOH . L 5 HOH H 2 1302 9 HOH HOH . L 5 HOH H 3 1303 176 HOH HOH . L 5 HOH H 4 1304 29 HOH HOH . L 5 HOH H 5 1305 45 HOH HOH . L 5 HOH H 6 1306 119 HOH HOH . L 5 HOH H 7 1307 4 HOH HOH . L 5 HOH H 8 1308 82 HOH HOH . L 5 HOH H 9 1309 5 HOH HOH . L 5 HOH H 10 1310 56 HOH HOH . L 5 HOH H 11 1311 42 HOH HOH . L 5 HOH H 12 1312 11 HOH HOH . L 5 HOH H 13 1313 74 HOH HOH . L 5 HOH H 14 1314 23 HOH HOH . L 5 HOH H 15 1315 68 HOH HOH . L 5 HOH H 16 1316 16 HOH HOH . L 5 HOH H 17 1317 69 HOH HOH . L 5 HOH H 18 1318 92 HOH HOH . L 5 HOH H 19 1319 149 HOH HOH . L 5 HOH H 20 1320 93 HOH HOH . L 5 HOH H 21 1321 2 HOH HOH . L 5 HOH H 22 1322 77 HOH HOH . L 5 HOH H 23 1323 84 HOH HOH . L 5 HOH H 24 1324 26 HOH HOH . L 5 HOH H 25 1325 117 HOH HOH . L 5 HOH H 26 1326 100 HOH HOH . L 5 HOH H 27 1327 50 HOH HOH . L 5 HOH H 28 1328 179 HOH HOH . L 5 HOH H 29 1329 38 HOH HOH . L 5 HOH H 30 1330 97 HOH HOH . L 5 HOH H 31 1331 57 HOH HOH . L 5 HOH H 32 1332 78 HOH HOH . L 5 HOH H 33 1333 47 HOH HOH . L 5 HOH H 34 1334 22 HOH HOH . L 5 HOH H 35 1335 15 HOH HOH . L 5 HOH H 36 1336 36 HOH HOH . L 5 HOH H 37 1337 28 HOH HOH . L 5 HOH H 38 1338 37 HOH HOH . L 5 HOH H 39 1339 60 HOH HOH . L 5 HOH H 40 1340 1 HOH HOH . L 5 HOH H 41 1341 63 HOH HOH . L 5 HOH H 42 1342 178 HOH HOH . L 5 HOH H 43 1343 83 HOH HOH . L 5 HOH H 44 1344 18 HOH HOH . L 5 HOH H 45 1345 46 HOH HOH . L 5 HOH H 46 1346 141 HOH HOH . L 5 HOH H 47 1347 25 HOH HOH . L 5 HOH H 48 1348 44 HOH HOH . L 5 HOH H 49 1349 19 HOH HOH . L 5 HOH H 50 1350 72 HOH HOH . L 5 HOH H 51 1351 27 HOH HOH . L 5 HOH H 52 1352 40 HOH HOH . L 5 HOH H 53 1353 123 HOH HOH . L 5 HOH H 54 1354 17 HOH HOH . L 5 HOH H 55 1355 76 HOH HOH . L 5 HOH H 56 1356 181 HOH HOH . L 5 HOH H 57 1357 106 HOH HOH . L 5 HOH H 58 1358 61 HOH HOH . L 5 HOH H 59 1359 52 HOH HOH . L 5 HOH H 60 1360 64 HOH HOH . L 5 HOH H 61 1361 73 HOH HOH . L 5 HOH H 62 1362 133 HOH HOH . L 5 HOH H 63 1363 59 HOH HOH . L 5 HOH H 64 1364 14 HOH HOH . L 5 HOH H 65 1365 13 HOH HOH . L 5 HOH H 66 1366 33 HOH HOH . L 5 HOH H 67 1367 8 HOH HOH . L 5 HOH H 68 1368 139 HOH HOH . L 5 HOH H 69 1369 12 HOH HOH . L 5 HOH H 70 1370 103 HOH HOH . L 5 HOH H 71 1371 166 HOH HOH . L 5 HOH H 72 1372 87 HOH HOH . L 5 HOH H 73 1373 144 HOH HOH . L 5 HOH H 74 1374 159 HOH HOH . L 5 HOH H 75 1375 175 HOH HOH . L 5 HOH H 76 1376 127 HOH HOH . L 5 HOH H 77 1377 153 HOH HOH . L 5 HOH H 78 1378 177 HOH HOH . L 5 HOH H 79 1379 80 HOH HOH . L 5 HOH H 80 1380 170 HOH HOH . L 5 HOH H 81 1381 53 HOH HOH . L 5 HOH H 82 1382 98 HOH HOH . L 5 HOH H 83 1383 174 HOH HOH . L 5 HOH H 84 1384 151 HOH HOH . L 5 HOH H 85 1385 10 HOH HOH . L 5 HOH H 86 1386 173 HOH HOH . L 5 HOH H 87 1387 155 HOH HOH . L 5 HOH H 88 1388 167 HOH HOH . L 5 HOH H 89 1389 180 HOH HOH . L 5 HOH H 90 1390 35 HOH HOH . L 5 HOH H 91 1391 51 HOH HOH . M 5 HOH P 1 201 169 HOH HOH . M 5 HOH P 2 202 43 HOH HOH . M 5 HOH P 3 203 21 HOH HOH . M 5 HOH P 4 204 111 HOH HOH . M 5 HOH P 5 205 125 HOH HOH . M 5 HOH P 6 206 79 HOH HOH . M 5 HOH P 7 207 145 HOH HOH . M 5 HOH P 8 208 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 -6.517 -14.484 3.039 1 41.79 ? C1 EDO 1208 H 1 HETATM 2 O O1 EDO . . . J 3 -7.658 -14.35 3.89 1 37.71 ? O1 EDO 1208 H 1 HETATM 3 C C2 EDO . . . J 3 -5.292 -13.862 3.703 1 43.84 ? C2 EDO 1208 H 1 HETATM 4 O O2 EDO . . . J 3 -5.323 -12.445 3.534 1 45.91 ? O2 EDO 1208 H 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #