data_6G19 # _model_server_result.job_id 5Yo1Ym8x8cqjHC5hcwydKQ _model_server_result.datetime_utc '2025-07-07 20:01:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g19 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1102}' # _entry.id 6G19 # _exptl.entry_id 6G19 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G19 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G19 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 638 A CYS 962 1_555 A SG CYS 640 A CYS 964 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc1 A SG CYS 583 A CYS 907 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A SG CYS 586 A CYS 910 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A SG CYS 638 A CYS 962 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc4 A SG CYS 640 A CYS 964 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? hydrog WATSON-CRICK hydrog1 B N3 C 1 X C 1 1_555 C N1 G 14 Y G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 C 1 X C 1 1_555 C O6 G 14 Y G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 C 1 X C 1 1_555 C N2 G 14 Y G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 A 2 X A 2 1_555 C N3 U 13 Y U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 A 2 X A 2 1_555 C O4 U 13 Y U 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 X A 3 1_555 C N3 U 12 Y U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 X A 3 1_555 C O4 U 12 Y U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 G 4 X G 4 1_555 C N3 C 11 Y C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N2 G 4 X G 4 1_555 C O2 C 11 Y C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O6 G 4 X G 4 1_555 C N4 C 11 Y C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 C 5 X C 5 1_555 C N1 G 10 Y G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 C 5 X C 5 1_555 C O6 G 10 Y G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 C 5 X C 5 1_555 C N2 G 10 Y G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 C 6 X C 6 1_555 C N1 G 9 Y G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 C 6 X C 6 1_555 C O6 G 9 Y G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 C 6 X C 6 1_555 C N2 G 9 Y G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 G 7 X G 7 1_555 C N3 C 8 Y C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 G 7 X G 7 1_555 C O2 C 8 Y C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 G 7 X G 7 1_555 C N4 C 8 Y C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 A 8 X A 8 1_555 C N3 U 7 Y U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N6 A 8 X A 8 1_555 C O4 U 7 Y U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 G 9 X G 9 1_555 C N3 C 6 Y C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N2 G 9 X G 9 1_555 C O2 C 6 Y C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O6 G 9 X G 9 1_555 C N4 C 6 Y C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 G 10 X G 10 1_555 C N3 C 5 Y C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N2 G 10 X G 10 1_555 C O2 C 5 Y C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O6 G 10 X G 10 1_555 C N4 C 5 Y C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N1 A 11 X A 11 1_555 C N3 U 4 Y U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N6 A 11 X A 11 1_555 C O4 U 4 Y U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N1 G 12 X G 12 1_555 C N3 C 3 Y C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N2 G 12 X G 12 1_555 C O2 C 3 Y C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O6 G 12 X G 12 1_555 C N4 C 3 Y C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N1 A 13 X A 13 1_555 C N3 U 2 Y U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N6 A 13 X A 13 1_555 C O4 U 2 Y U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B N1 G 14 X G 14 1_555 C N3 C 1 Y C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B N2 G 14 X G 14 1_555 C O2 C 1 Y C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 B O6 G 14 X G 14 1_555 C N4 C 1 Y C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 52 n n PG O2G ANP sing 53 n n PG O3G ANP sing 54 n n PG N3B ANP sing 55 n n O2G HOG2 ANP sing 56 n n O3G HOG3 ANP sing 57 n n PB O1B ANP doub 58 n n PB O2B ANP sing 59 n n PB N3B ANP sing 60 n n PB O3A ANP sing 61 n n O2B HOB2 ANP sing 62 n n N3B HNB1 ANP sing 63 n n PA O1A ANP doub 64 n n PA O2A ANP sing 65 n n PA O3A ANP sing 66 n n PA O5' ANP sing 67 n n O2A HOA2 ANP sing 68 n n O5' C5' ANP sing 69 n n C5' C4' ANP sing 70 n n C5' "H5'1" ANP sing 71 n n C5' "H5'2" ANP sing 72 n n C4' O4' ANP sing 73 n n C4' C3' ANP sing 74 n n C4' H4' ANP sing 75 n n O4' C1' ANP sing 76 n n C3' O3' ANP sing 77 n n C3' C2' ANP sing 78 n n C3' H3' ANP sing 79 n n O3' HO3' ANP sing 80 n n C2' O2' ANP sing 81 n n C2' C1' ANP sing 82 n n C2' H2' ANP sing 83 n n O2' HO2' ANP sing 84 n n C1' N9 ANP sing 85 n n C1' H1' ANP sing 86 n n N9 C8 ANP sing 87 n y N9 C4 ANP sing 88 n y C8 N7 ANP doub 89 n y C8 H8 ANP sing 90 n n N7 C5 ANP sing 91 n y C5 C6 ANP sing 92 n y C5 C4 ANP doub 93 n y C6 N6 ANP sing 94 n n C6 N1 ANP doub 95 n y N6 HN61 ANP sing 96 n n N6 HN62 ANP sing 97 n n N1 C2 ANP sing 98 n y C2 N3 ANP doub 99 n y C2 H2 ANP sing 100 n n N3 C4 ANP sing 101 n y # _atom_sites.entry_id 6G19 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 1101 1101 ZN ZN . E 5 ANP A 1 1102 1102 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 5 98.281 140.6 118.655 1 66.44 ? PG ANP 1102 A 1 HETATM 2 O O1G ANP . . . E 5 98.146 140.999 117.141 1 66.44 ? O1G ANP 1102 A 1 HETATM 3 O O2G ANP . . . E 5 99.69 140.808 119.103 1 66.44 ? O2G ANP 1102 A 1 HETATM 4 O O3G ANP . . . E 5 97.895 139.08 118.833 1 66.44 ? O3G ANP 1102 A 1 HETATM 5 P PB ANP . . . E 5 97.109 140.829 121.086 1 66.44 ? PB ANP 1102 A 1 HETATM 6 O O1B ANP . . . E 5 95.905 139.845 121.075 1 66.44 ? O1B ANP 1102 A 1 HETATM 7 O O2B ANP . . . E 5 98.364 140.08 121.383 1 66.44 ? O2B ANP 1102 A 1 HETATM 8 N N3B ANP . . . E 5 97.241 141.552 119.584 1 66.44 ? N3B ANP 1102 A 1 HETATM 9 P PA ANP . . . E 5 96.087 143.225 121.8 1 66.44 ? PA ANP 1102 A 1 HETATM 10 O O1A ANP . . . E 5 95.523 142.981 120.398 1 66.44 ? O1A ANP 1102 A 1 HETATM 11 O O2A ANP . . . E 5 96.938 144.434 121.901 1 66.44 ? O2A ANP 1102 A 1 HETATM 12 O O3A ANP . . . E 5 96.893 141.918 122.176 1 66.44 ? O3A ANP 1102 A 1 HETATM 13 O O5' ANP . . . E 5 94.952 143.31 122.903 1 66.44 ? O5' ANP 1102 A 1 HETATM 14 C C5' ANP . . . E 5 95.271 143.515 124.295 1 66.44 ? C5' ANP 1102 A 1 HETATM 15 C C4' ANP . . . E 5 95.226 144.997 124.569 1 66.44 ? C4' ANP 1102 A 1 HETATM 16 O O4' ANP . . . E 5 94.232 145.603 123.721 1 66.44 ? O4' ANP 1102 A 1 HETATM 17 C C3' ANP . . . E 5 94.824 145.385 125.985 1 66.44 ? C3' ANP 1102 A 1 HETATM 18 O O3' ANP . . . E 5 95.345 146.663 126.335 1 66.44 ? O3' ANP 1102 A 1 HETATM 19 C C2' ANP . . . E 5 93.297 145.4 125.9 1 66.44 ? C2' ANP 1102 A 1 HETATM 20 O O2' ANP . . . E 5 92.773 146.332 126.838 1 66.44 ? O2' ANP 1102 A 1 HETATM 21 C C1' ANP . . . E 5 93.058 145.876 124.463 1 66.44 ? C1' ANP 1102 A 1 HETATM 22 N N9 ANP . . . E 5 91.929 145.246 123.776 1 66.44 ? N9 ANP 1102 A 1 HETATM 23 C C8 ANP . . . E 5 91.991 144.275 122.812 1 66.44 ? C8 ANP 1102 A 1 HETATM 24 N N7 ANP . . . E 5 90.816 143.911 122.349 1 66.44 ? N7 ANP 1102 A 1 HETATM 25 C C5 ANP . . . E 5 89.924 144.701 123.063 1 66.44 ? C5 ANP 1102 A 1 HETATM 26 C C6 ANP . . . E 5 88.518 144.807 123.034 1 66.44 ? C6 ANP 1102 A 1 HETATM 27 N N6 ANP . . . E 5 87.735 144.081 122.237 1 66.44 ? N6 ANP 1102 A 1 HETATM 28 N N1 ANP . . . E 5 87.941 145.706 123.866 1 66.44 ? N1 ANP 1102 A 1 HETATM 29 C C2 ANP . . . E 5 88.723 146.444 124.66 1 66.44 ? C2 ANP 1102 A 1 HETATM 30 N N3 ANP . . . E 5 90.054 146.433 124.772 1 66.44 ? N3 ANP 1102 A 1 HETATM 31 C C4 ANP . . . E 5 90.601 145.55 123.928 1 66.44 ? C4 ANP 1102 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #