data_6G1O # _model_server_result.job_id n5WHA_1QuFukIVDHf00WAg _model_server_result.datetime_utc '2025-06-26 11:20:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6G1O # _exptl.entry_id 6G1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 74.035 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G1O _cell.length_a 80.943 _cell.length_b 116.023 _cell.length_c 128.533 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -116.023 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -116.023 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 184 A ASP 184 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc2 A OD2 ASP 184 A ASP 184 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc3 A OD1 ASP 186 A ASP 186 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc4 B CA CA . A CA 501 1_555 C O2 GLV . A GLV 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc5 B CA CA . A CA 501 1_555 C O3 GLV . A GLV 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 B CA CA . A CA 501 1_555 D O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc7 B CA CA . A CA 501 1_555 D O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc8 B CA CA . A CA 501 1_555 D O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C2 H2 O3' _chem_comp.formula_weight 74.035 _chem_comp.id GLV _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYOXALATE;GLYOXYLATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GLV doub 120 n n C1 C2 GLV sing 121 n n C1 H1 GLV sing 122 n n C2 O2 GLV doub 123 n n C2 O3 GLV sing 124 n n O3 HO3 GLV sing 125 n n # _atom_sites.entry_id 6G1O _atom_sites.fract_transf_matrix[1][1] 0.012354 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 1 CA CA . C 3 GLV A 1 502 2 GLV GLV . D 4 HOH A 1 601 77 HOH HOH . D 4 HOH A 2 602 78 HOH HOH . D 4 HOH A 3 603 9 HOH HOH . D 4 HOH A 4 604 112 HOH HOH . D 4 HOH A 5 605 188 HOH HOH . D 4 HOH A 6 606 151 HOH HOH . D 4 HOH A 7 607 161 HOH HOH . D 4 HOH A 8 608 164 HOH HOH . D 4 HOH A 9 609 117 HOH HOH . D 4 HOH A 10 610 103 HOH HOH . D 4 HOH A 11 611 162 HOH HOH . D 4 HOH A 12 612 94 HOH HOH . D 4 HOH A 13 613 82 HOH HOH . D 4 HOH A 14 614 6 HOH HOH . D 4 HOH A 15 615 48 HOH HOH . D 4 HOH A 16 616 163 HOH HOH . D 4 HOH A 17 617 36 HOH HOH . D 4 HOH A 18 618 57 HOH HOH . D 4 HOH A 19 619 75 HOH HOH . D 4 HOH A 20 620 54 HOH HOH . D 4 HOH A 21 621 125 HOH HOH . D 4 HOH A 22 622 157 HOH HOH . D 4 HOH A 23 623 76 HOH HOH . D 4 HOH A 24 624 28 HOH HOH . D 4 HOH A 25 625 24 HOH HOH . D 4 HOH A 26 626 7 HOH HOH . D 4 HOH A 27 627 142 HOH HOH . D 4 HOH A 28 628 118 HOH HOH . D 4 HOH A 29 629 89 HOH HOH . D 4 HOH A 30 630 184 HOH HOH . D 4 HOH A 31 631 27 HOH HOH . D 4 HOH A 32 632 70 HOH HOH . D 4 HOH A 33 633 3 HOH HOH . D 4 HOH A 34 634 29 HOH HOH . D 4 HOH A 35 635 166 HOH HOH . D 4 HOH A 36 636 177 HOH HOH . D 4 HOH A 37 637 74 HOH HOH . D 4 HOH A 38 638 139 HOH HOH . D 4 HOH A 39 639 65 HOH HOH . D 4 HOH A 40 640 124 HOH HOH . D 4 HOH A 41 641 16 HOH HOH . D 4 HOH A 42 642 8 HOH HOH . D 4 HOH A 43 643 104 HOH HOH . D 4 HOH A 44 644 165 HOH HOH . D 4 HOH A 45 645 116 HOH HOH . D 4 HOH A 46 646 49 HOH HOH . D 4 HOH A 47 647 13 HOH HOH . D 4 HOH A 48 648 23 HOH HOH . D 4 HOH A 49 649 147 HOH HOH . D 4 HOH A 50 650 107 HOH HOH . D 4 HOH A 51 651 178 HOH HOH . D 4 HOH A 52 652 5 HOH HOH . D 4 HOH A 53 653 66 HOH HOH . D 4 HOH A 54 654 37 HOH HOH . D 4 HOH A 55 655 63 HOH HOH . D 4 HOH A 56 656 4 HOH HOH . D 4 HOH A 57 657 50 HOH HOH . D 4 HOH A 58 658 114 HOH HOH . D 4 HOH A 59 659 154 HOH HOH . D 4 HOH A 60 660 61 HOH HOH . D 4 HOH A 61 661 40 HOH HOH . D 4 HOH A 62 662 87 HOH HOH . D 4 HOH A 63 663 1 HOH HOH . D 4 HOH A 64 664 111 HOH HOH . D 4 HOH A 65 665 42 HOH HOH . D 4 HOH A 66 666 138 HOH HOH . D 4 HOH A 67 667 86 HOH HOH . D 4 HOH A 68 668 69 HOH HOH . D 4 HOH A 69 669 46 HOH HOH . D 4 HOH A 70 670 26 HOH HOH . D 4 HOH A 71 671 12 HOH HOH . D 4 HOH A 72 672 113 HOH HOH . D 4 HOH A 73 673 141 HOH HOH . D 4 HOH A 74 674 62 HOH HOH . D 4 HOH A 75 675 121 HOH HOH . D 4 HOH A 76 676 119 HOH HOH . D 4 HOH A 77 677 133 HOH HOH . D 4 HOH A 78 678 126 HOH HOH . D 4 HOH A 79 679 2 HOH HOH . D 4 HOH A 80 680 19 HOH HOH . D 4 HOH A 81 681 17 HOH HOH . D 4 HOH A 82 682 108 HOH HOH . D 4 HOH A 83 683 20 HOH HOH . D 4 HOH A 84 684 122 HOH HOH . D 4 HOH A 85 685 101 HOH HOH . D 4 HOH A 86 686 134 HOH HOH . D 4 HOH A 87 687 91 HOH HOH . D 4 HOH A 88 688 81 HOH HOH . D 4 HOH A 89 689 93 HOH HOH . D 4 HOH A 90 690 131 HOH HOH . D 4 HOH A 91 691 44 HOH HOH . D 4 HOH A 92 692 170 HOH HOH . D 4 HOH A 93 693 11 HOH HOH . D 4 HOH A 94 694 145 HOH HOH . D 4 HOH A 95 695 135 HOH HOH . D 4 HOH A 96 696 21 HOH HOH . D 4 HOH A 97 697 15 HOH HOH . D 4 HOH A 98 698 130 HOH HOH . D 4 HOH A 99 699 136 HOH HOH . D 4 HOH A 100 700 97 HOH HOH . D 4 HOH A 101 701 25 HOH HOH . D 4 HOH A 102 702 34 HOH HOH . D 4 HOH A 103 703 32 HOH HOH . D 4 HOH A 104 704 72 HOH HOH . D 4 HOH A 105 705 31 HOH HOH . D 4 HOH A 106 706 80 HOH HOH . D 4 HOH A 107 707 88 HOH HOH . D 4 HOH A 108 708 179 HOH HOH . D 4 HOH A 109 709 14 HOH HOH . D 4 HOH A 110 710 53 HOH HOH . D 4 HOH A 111 711 43 HOH HOH . D 4 HOH A 112 712 58 HOH HOH . D 4 HOH A 113 713 83 HOH HOH . D 4 HOH A 114 714 180 HOH HOH . D 4 HOH A 115 715 55 HOH HOH . D 4 HOH A 116 716 168 HOH HOH . D 4 HOH A 117 717 59 HOH HOH . D 4 HOH A 118 718 159 HOH HOH . D 4 HOH A 119 719 71 HOH HOH . D 4 HOH A 120 720 22 HOH HOH . D 4 HOH A 121 721 90 HOH HOH . D 4 HOH A 122 722 100 HOH HOH . D 4 HOH A 123 723 148 HOH HOH . D 4 HOH A 124 724 39 HOH HOH . D 4 HOH A 125 725 60 HOH HOH . D 4 HOH A 126 726 155 HOH HOH . D 4 HOH A 127 727 102 HOH HOH . D 4 HOH A 128 728 152 HOH HOH . D 4 HOH A 129 729 140 HOH HOH . D 4 HOH A 130 730 150 HOH HOH . D 4 HOH A 131 731 35 HOH HOH . D 4 HOH A 132 732 110 HOH HOH . D 4 HOH A 133 733 10 HOH HOH . D 4 HOH A 134 734 128 HOH HOH . D 4 HOH A 135 735 41 HOH HOH . D 4 HOH A 136 736 137 HOH HOH . D 4 HOH A 137 737 45 HOH HOH . D 4 HOH A 138 738 33 HOH HOH . D 4 HOH A 139 739 175 HOH HOH . D 4 HOH A 140 740 95 HOH HOH . D 4 HOH A 141 741 146 HOH HOH . D 4 HOH A 142 742 99 HOH HOH . D 4 HOH A 143 743 105 HOH HOH . D 4 HOH A 144 744 47 HOH HOH . D 4 HOH A 145 745 183 HOH HOH . D 4 HOH A 146 746 85 HOH HOH . D 4 HOH A 147 747 143 HOH HOH . D 4 HOH A 148 748 52 HOH HOH . D 4 HOH A 149 749 38 HOH HOH . D 4 HOH A 150 750 115 HOH HOH . D 4 HOH A 151 751 158 HOH HOH . D 4 HOH A 152 752 173 HOH HOH . D 4 HOH A 153 753 96 HOH HOH . D 4 HOH A 154 754 106 HOH HOH . D 4 HOH A 155 755 144 HOH HOH . D 4 HOH A 156 756 123 HOH HOH . D 4 HOH A 157 757 84 HOH HOH . D 4 HOH A 158 758 129 HOH HOH . D 4 HOH A 159 759 160 HOH HOH . D 4 HOH A 160 760 171 HOH HOH . D 4 HOH A 161 761 98 HOH HOH . D 4 HOH A 162 762 73 HOH HOH . D 4 HOH A 163 763 109 HOH HOH . D 4 HOH A 164 764 156 HOH HOH . D 4 HOH A 165 765 176 HOH HOH . D 4 HOH A 166 766 120 HOH HOH . D 4 HOH A 167 767 174 HOH HOH . D 4 HOH A 168 768 56 HOH HOH . D 4 HOH A 169 769 68 HOH HOH . D 4 HOH A 170 770 172 HOH HOH . D 4 HOH A 171 771 64 HOH HOH . D 4 HOH A 172 772 153 HOH HOH . D 4 HOH A 173 773 67 HOH HOH . D 4 HOH A 174 774 79 HOH HOH . D 4 HOH A 175 775 181 HOH HOH . D 4 HOH A 176 776 149 HOH HOH . D 4 HOH A 177 777 169 HOH HOH . D 4 HOH A 178 778 30 HOH HOH . D 4 HOH A 179 779 167 HOH HOH . D 4 HOH A 180 780 51 HOH HOH . D 4 HOH A 181 781 92 HOH HOH . D 4 HOH A 182 782 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLV . . . C 3 -2.075 -46.473 -20.741 1 57.18 ? C1 GLV 502 A 1 HETATM 2 O O1 GLV . . . C 3 -1.787 -47.52 -20.235 1 53.58 ? O1 GLV 502 A 1 HETATM 3 C C2 GLV . . . C 3 -2.904 -45.448 -19.977 1 54.9 ? C2 GLV 502 A 1 HETATM 4 O O2 GLV . . . C 3 -3.469 -44.465 -20.552 1 56.18 ? O2 GLV 502 A 1 HETATM 5 O O3 GLV . . . C 3 -3.022 -45.598 -18.734 1 60.14 ? O3 GLV 502 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #