data_6G2V # _model_server_result.job_id -zg7yNrqm_Mc4hZu-dRI_Q _model_server_result.datetime_utc '2024-11-22 06:42:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 6G2V # _exptl.entry_id 6G2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G2V _cell.length_a 90.14 _cell.length_b 90.14 _cell.length_c 65.21 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 290 n n C1 H11 MPD sing 291 n n C1 H12 MPD sing 292 n n C1 H13 MPD sing 293 n n C2 O2 MPD sing 294 n n C2 CM MPD sing 295 n n C2 C3 MPD sing 296 n n O2 HO2 MPD sing 297 n n CM HM1 MPD sing 298 n n CM HM2 MPD sing 299 n n CM HM3 MPD sing 300 n n C3 C4 MPD sing 301 n n C3 H31 MPD sing 302 n n C3 H32 MPD sing 303 n n C4 O4 MPD sing 304 n n C4 C5 MPD sing 305 n n C4 H4 MPD sing 306 n n O4 HO4 MPD sing 307 n n C5 H51 MPD sing 308 n n C5 H52 MPD sing 309 n n C5 H53 MPD sing 310 n n # _atom_sites.entry_id 6G2V _atom_sites.fract_transf_matrix[1][1] 0.011094 _atom_sites.fract_transf_matrix[1][2] 0.006405 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 801 1 MPD MPD . C 2 MPD A 1 802 2 MPD MPD . D 2 MPD A 1 803 3 MPD MPD . E 2 MPD A 1 804 4 MPD MPD . F 3 DMS A 1 805 5 DMS DMS . G 4 ADP A 1 806 6 ADP ADP . H 5 HOH A 1 901 138 HOH HOH . H 5 HOH A 2 902 22 HOH HOH . H 5 HOH A 3 903 98 HOH HOH . H 5 HOH A 4 904 109 HOH HOH . H 5 HOH A 5 905 123 HOH HOH . H 5 HOH A 6 906 112 HOH HOH . H 5 HOH A 7 907 20 HOH HOH . H 5 HOH A 8 908 31 HOH HOH . H 5 HOH A 9 909 74 HOH HOH . H 5 HOH A 10 910 89 HOH HOH . H 5 HOH A 11 911 111 HOH HOH . H 5 HOH A 12 912 79 HOH HOH . H 5 HOH A 13 913 12 HOH HOH . H 5 HOH A 14 914 33 HOH HOH . H 5 HOH A 15 915 21 HOH HOH . H 5 HOH A 16 916 91 HOH HOH . H 5 HOH A 17 917 87 HOH HOH . H 5 HOH A 18 918 15 HOH HOH . H 5 HOH A 19 919 35 HOH HOH . H 5 HOH A 20 920 78 HOH HOH . H 5 HOH A 21 921 13 HOH HOH . H 5 HOH A 22 922 62 HOH HOH . H 5 HOH A 23 923 43 HOH HOH . H 5 HOH A 24 924 9 HOH HOH . H 5 HOH A 25 925 90 HOH HOH . H 5 HOH A 26 926 57 HOH HOH . H 5 HOH A 27 927 40 HOH HOH . H 5 HOH A 28 928 7 HOH HOH . H 5 HOH A 29 929 16 HOH HOH . H 5 HOH A 30 930 63 HOH HOH . H 5 HOH A 31 931 66 HOH HOH . H 5 HOH A 32 932 100 HOH HOH . H 5 HOH A 33 933 36 HOH HOH . H 5 HOH A 34 934 18 HOH HOH . H 5 HOH A 35 935 124 HOH HOH . H 5 HOH A 36 936 11 HOH HOH . H 5 HOH A 37 937 5 HOH HOH . H 5 HOH A 38 938 97 HOH HOH . H 5 HOH A 39 939 1 HOH HOH . H 5 HOH A 40 940 2 HOH HOH . H 5 HOH A 41 941 56 HOH HOH . H 5 HOH A 42 942 110 HOH HOH . H 5 HOH A 43 943 49 HOH HOH . H 5 HOH A 44 944 102 HOH HOH . H 5 HOH A 45 945 82 HOH HOH . H 5 HOH A 46 946 53 HOH HOH . H 5 HOH A 47 947 24 HOH HOH . H 5 HOH A 48 948 60 HOH HOH . H 5 HOH A 49 949 32 HOH HOH . H 5 HOH A 50 950 10 HOH HOH . H 5 HOH A 51 951 25 HOH HOH . H 5 HOH A 52 952 6 HOH HOH . H 5 HOH A 53 953 108 HOH HOH . H 5 HOH A 54 954 67 HOH HOH . H 5 HOH A 55 955 85 HOH HOH . H 5 HOH A 56 956 38 HOH HOH . H 5 HOH A 57 957 99 HOH HOH . H 5 HOH A 58 958 46 HOH HOH . H 5 HOH A 59 959 70 HOH HOH . H 5 HOH A 60 960 29 HOH HOH . H 5 HOH A 61 961 64 HOH HOH . H 5 HOH A 62 962 80 HOH HOH . H 5 HOH A 63 963 17 HOH HOH . H 5 HOH A 64 964 113 HOH HOH . H 5 HOH A 65 965 14 HOH HOH . H 5 HOH A 66 966 71 HOH HOH . H 5 HOH A 67 967 8 HOH HOH . H 5 HOH A 68 968 61 HOH HOH . H 5 HOH A 69 969 75 HOH HOH . H 5 HOH A 70 970 65 HOH HOH . H 5 HOH A 71 971 3 HOH HOH . H 5 HOH A 72 972 59 HOH HOH . H 5 HOH A 73 973 129 HOH HOH . H 5 HOH A 74 974 55 HOH HOH . H 5 HOH A 75 975 42 HOH HOH . H 5 HOH A 76 976 23 HOH HOH . H 5 HOH A 77 977 26 HOH HOH . H 5 HOH A 78 978 69 HOH HOH . H 5 HOH A 79 979 84 HOH HOH . H 5 HOH A 80 980 30 HOH HOH . H 5 HOH A 81 981 106 HOH HOH . H 5 HOH A 82 982 45 HOH HOH . H 5 HOH A 83 983 39 HOH HOH . H 5 HOH A 84 984 19 HOH HOH . H 5 HOH A 85 985 48 HOH HOH . H 5 HOH A 86 986 130 HOH HOH . H 5 HOH A 87 987 76 HOH HOH . H 5 HOH A 88 988 37 HOH HOH . H 5 HOH A 89 989 103 HOH HOH . H 5 HOH A 90 990 27 HOH HOH . H 5 HOH A 91 991 28 HOH HOH . H 5 HOH A 92 992 77 HOH HOH . H 5 HOH A 93 993 115 HOH HOH . H 5 HOH A 94 994 51 HOH HOH . H 5 HOH A 95 995 4 HOH HOH . H 5 HOH A 96 996 136 HOH HOH . H 5 HOH A 97 997 118 HOH HOH . H 5 HOH A 98 998 121 HOH HOH . H 5 HOH A 99 999 95 HOH HOH . H 5 HOH A 100 1000 96 HOH HOH . H 5 HOH A 101 1001 94 HOH HOH . H 5 HOH A 102 1002 134 HOH HOH . H 5 HOH A 103 1003 47 HOH HOH . H 5 HOH A 104 1004 117 HOH HOH . H 5 HOH A 105 1005 145 HOH HOH . H 5 HOH A 106 1006 143 HOH HOH . H 5 HOH A 107 1007 126 HOH HOH . H 5 HOH A 108 1008 68 HOH HOH . H 5 HOH A 109 1009 93 HOH HOH . H 5 HOH A 110 1010 58 HOH HOH . H 5 HOH A 111 1011 81 HOH HOH . H 5 HOH A 112 1012 116 HOH HOH . H 5 HOH A 113 1013 128 HOH HOH . H 5 HOH A 114 1014 104 HOH HOH . H 5 HOH A 115 1015 114 HOH HOH . H 5 HOH A 116 1016 139 HOH HOH . H 5 HOH A 117 1017 101 HOH HOH . H 5 HOH A 118 1018 54 HOH HOH . H 5 HOH A 119 1019 44 HOH HOH . H 5 HOH A 120 1020 92 HOH HOH . H 5 HOH A 121 1021 135 HOH HOH . H 5 HOH A 122 1022 73 HOH HOH . H 5 HOH A 123 1023 72 HOH HOH . H 5 HOH A 124 1024 88 HOH HOH . H 5 HOH A 125 1025 125 HOH HOH . H 5 HOH A 126 1026 83 HOH HOH . H 5 HOH A 127 1027 131 HOH HOH . H 5 HOH A 128 1028 41 HOH HOH . H 5 HOH A 129 1029 34 HOH HOH . H 5 HOH A 130 1030 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 2 28.814 126.096 20.863 1 49.11 ? C1 MPD 803 A 1 HETATM 2 C C2 MPD . . . D 2 28.679 126.594 19.43 1 50.88 ? C2 MPD 803 A 1 HETATM 3 O O2 MPD . . . D 2 29.506 125.791 18.581 1 48.05 ? O2 MPD 803 A 1 HETATM 4 C CM MPD . . . D 2 27.234 126.479 18.962 1 48.71 ? CM MPD 803 A 1 HETATM 5 C C3 MPD . . . D 2 29.146 128.041 19.334 1 47.5 ? C3 MPD 803 A 1 HETATM 6 C C4 MPD . . . D 2 28.773 128.647 17.986 1 43.81 ? C4 MPD 803 A 1 HETATM 7 O O4 MPD . . . D 2 28.946 130.067 18.036 1 45.29 ? O4 MPD 803 A 1 HETATM 8 C C5 MPD . . . D 2 29.636 128.069 16.87 1 39.59 ? C5 MPD 803 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #