data_6G2V # _model_server_result.job_id LuSmBeP7p2LdP263aeVQzA _model_server_result.datetime_utc '2024-11-05 06:57:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":806}' # _entry.id 6G2V # _exptl.entry_id 6G2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G2V _cell.length_a 90.14 _cell.length_b 90.14 _cell.length_c 65.21 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6G2V _atom_sites.fract_transf_matrix[1][1] 0.011094 _atom_sites.fract_transf_matrix[1][2] 0.006405 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 801 1 MPD MPD . C 2 MPD A 1 802 2 MPD MPD . D 2 MPD A 1 803 3 MPD MPD . E 2 MPD A 1 804 4 MPD MPD . F 3 DMS A 1 805 5 DMS DMS . G 4 ADP A 1 806 6 ADP ADP . H 5 HOH A 1 901 138 HOH HOH . H 5 HOH A 2 902 22 HOH HOH . H 5 HOH A 3 903 98 HOH HOH . H 5 HOH A 4 904 109 HOH HOH . H 5 HOH A 5 905 123 HOH HOH . H 5 HOH A 6 906 112 HOH HOH . H 5 HOH A 7 907 20 HOH HOH . H 5 HOH A 8 908 31 HOH HOH . H 5 HOH A 9 909 74 HOH HOH . H 5 HOH A 10 910 89 HOH HOH . H 5 HOH A 11 911 111 HOH HOH . H 5 HOH A 12 912 79 HOH HOH . H 5 HOH A 13 913 12 HOH HOH . H 5 HOH A 14 914 33 HOH HOH . H 5 HOH A 15 915 21 HOH HOH . H 5 HOH A 16 916 91 HOH HOH . H 5 HOH A 17 917 87 HOH HOH . H 5 HOH A 18 918 15 HOH HOH . H 5 HOH A 19 919 35 HOH HOH . H 5 HOH A 20 920 78 HOH HOH . H 5 HOH A 21 921 13 HOH HOH . H 5 HOH A 22 922 62 HOH HOH . H 5 HOH A 23 923 43 HOH HOH . H 5 HOH A 24 924 9 HOH HOH . H 5 HOH A 25 925 90 HOH HOH . H 5 HOH A 26 926 57 HOH HOH . H 5 HOH A 27 927 40 HOH HOH . H 5 HOH A 28 928 7 HOH HOH . H 5 HOH A 29 929 16 HOH HOH . H 5 HOH A 30 930 63 HOH HOH . H 5 HOH A 31 931 66 HOH HOH . H 5 HOH A 32 932 100 HOH HOH . H 5 HOH A 33 933 36 HOH HOH . H 5 HOH A 34 934 18 HOH HOH . H 5 HOH A 35 935 124 HOH HOH . H 5 HOH A 36 936 11 HOH HOH . H 5 HOH A 37 937 5 HOH HOH . H 5 HOH A 38 938 97 HOH HOH . H 5 HOH A 39 939 1 HOH HOH . H 5 HOH A 40 940 2 HOH HOH . H 5 HOH A 41 941 56 HOH HOH . H 5 HOH A 42 942 110 HOH HOH . H 5 HOH A 43 943 49 HOH HOH . H 5 HOH A 44 944 102 HOH HOH . H 5 HOH A 45 945 82 HOH HOH . H 5 HOH A 46 946 53 HOH HOH . H 5 HOH A 47 947 24 HOH HOH . H 5 HOH A 48 948 60 HOH HOH . H 5 HOH A 49 949 32 HOH HOH . H 5 HOH A 50 950 10 HOH HOH . H 5 HOH A 51 951 25 HOH HOH . H 5 HOH A 52 952 6 HOH HOH . H 5 HOH A 53 953 108 HOH HOH . H 5 HOH A 54 954 67 HOH HOH . H 5 HOH A 55 955 85 HOH HOH . H 5 HOH A 56 956 38 HOH HOH . H 5 HOH A 57 957 99 HOH HOH . H 5 HOH A 58 958 46 HOH HOH . H 5 HOH A 59 959 70 HOH HOH . H 5 HOH A 60 960 29 HOH HOH . H 5 HOH A 61 961 64 HOH HOH . H 5 HOH A 62 962 80 HOH HOH . H 5 HOH A 63 963 17 HOH HOH . H 5 HOH A 64 964 113 HOH HOH . H 5 HOH A 65 965 14 HOH HOH . H 5 HOH A 66 966 71 HOH HOH . H 5 HOH A 67 967 8 HOH HOH . H 5 HOH A 68 968 61 HOH HOH . H 5 HOH A 69 969 75 HOH HOH . H 5 HOH A 70 970 65 HOH HOH . H 5 HOH A 71 971 3 HOH HOH . H 5 HOH A 72 972 59 HOH HOH . H 5 HOH A 73 973 129 HOH HOH . H 5 HOH A 74 974 55 HOH HOH . H 5 HOH A 75 975 42 HOH HOH . H 5 HOH A 76 976 23 HOH HOH . H 5 HOH A 77 977 26 HOH HOH . H 5 HOH A 78 978 69 HOH HOH . H 5 HOH A 79 979 84 HOH HOH . H 5 HOH A 80 980 30 HOH HOH . H 5 HOH A 81 981 106 HOH HOH . H 5 HOH A 82 982 45 HOH HOH . H 5 HOH A 83 983 39 HOH HOH . H 5 HOH A 84 984 19 HOH HOH . H 5 HOH A 85 985 48 HOH HOH . H 5 HOH A 86 986 130 HOH HOH . H 5 HOH A 87 987 76 HOH HOH . H 5 HOH A 88 988 37 HOH HOH . H 5 HOH A 89 989 103 HOH HOH . H 5 HOH A 90 990 27 HOH HOH . H 5 HOH A 91 991 28 HOH HOH . H 5 HOH A 92 992 77 HOH HOH . H 5 HOH A 93 993 115 HOH HOH . H 5 HOH A 94 994 51 HOH HOH . H 5 HOH A 95 995 4 HOH HOH . H 5 HOH A 96 996 136 HOH HOH . H 5 HOH A 97 997 118 HOH HOH . H 5 HOH A 98 998 121 HOH HOH . H 5 HOH A 99 999 95 HOH HOH . H 5 HOH A 100 1000 96 HOH HOH . H 5 HOH A 101 1001 94 HOH HOH . H 5 HOH A 102 1002 134 HOH HOH . H 5 HOH A 103 1003 47 HOH HOH . H 5 HOH A 104 1004 117 HOH HOH . H 5 HOH A 105 1005 145 HOH HOH . H 5 HOH A 106 1006 143 HOH HOH . H 5 HOH A 107 1007 126 HOH HOH . H 5 HOH A 108 1008 68 HOH HOH . H 5 HOH A 109 1009 93 HOH HOH . H 5 HOH A 110 1010 58 HOH HOH . H 5 HOH A 111 1011 81 HOH HOH . H 5 HOH A 112 1012 116 HOH HOH . H 5 HOH A 113 1013 128 HOH HOH . H 5 HOH A 114 1014 104 HOH HOH . H 5 HOH A 115 1015 114 HOH HOH . H 5 HOH A 116 1016 139 HOH HOH . H 5 HOH A 117 1017 101 HOH HOH . H 5 HOH A 118 1018 54 HOH HOH . H 5 HOH A 119 1019 44 HOH HOH . H 5 HOH A 120 1020 92 HOH HOH . H 5 HOH A 121 1021 135 HOH HOH . H 5 HOH A 122 1022 73 HOH HOH . H 5 HOH A 123 1023 72 HOH HOH . H 5 HOH A 124 1024 88 HOH HOH . H 5 HOH A 125 1025 125 HOH HOH . H 5 HOH A 126 1026 83 HOH HOH . H 5 HOH A 127 1027 131 HOH HOH . H 5 HOH A 128 1028 41 HOH HOH . H 5 HOH A 129 1029 34 HOH HOH . H 5 HOH A 130 1030 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 4 43.026 112.197 4.457 1 26.21 ? PB ADP 806 A 1 HETATM 2 O O1B ADP . . . G 4 43.329 111.949 2.987 1 25.69 ? O1B ADP 806 A 1 HETATM 3 O O2B ADP . . . G 4 44.031 112.963 5.277 1 25.33 ? O2B ADP 806 A 1 HETATM 4 O O3B ADP . . . G 4 42.545 110.941 5.141 1 26.66 ? O3B ADP 806 A 1 HETATM 5 P PA ADP . . . G 4 41.062 113.985 3.253 1 26.49 ? PA ADP 806 A 1 HETATM 6 O O1A ADP . . . G 4 40.328 112.999 2.39 1 29.24 ? O1A ADP 806 A 1 HETATM 7 O O2A ADP . . . G 4 42.035 114.94 2.641 1 26.36 ? O2A ADP 806 A 1 HETATM 8 O O3A ADP . . . G 4 41.759 113.186 4.48 1 25.6 ? O3A ADP 806 A 1 HETATM 9 O O5' ADP . . . G 4 39.975 114.847 4.059 1 26.35 ? O5' ADP 806 A 1 HETATM 10 C C5' ADP . . . G 4 38.695 114.269 4.326 1 29.03 ? C5' ADP 806 A 1 HETATM 11 C C4' ADP . . . G 4 37.658 115.368 4.492 1 26.57 ? C4' ADP 806 A 1 HETATM 12 O O4' ADP . . . G 4 37.828 116.073 5.735 1 25.44 ? O4' ADP 806 A 1 HETATM 13 C C3' ADP . . . G 4 37.78 116.411 3.392 1 26.66 ? C3' ADP 806 A 1 HETATM 14 O O3' ADP . . . G 4 36.972 116.053 2.278 1 27.72 ? O3' ADP 806 A 1 HETATM 15 C C2' ADP . . . G 4 37.279 117.669 4.07 1 28.59 ? C2' ADP 806 A 1 HETATM 16 O O2' ADP . . . G 4 35.837 117.699 4.146 1 24.74 ? O2' ADP 806 A 1 HETATM 17 C C1' ADP . . . G 4 37.758 117.478 5.504 1 24.26 ? C1' ADP 806 A 1 HETATM 18 N N9 ADP . . . G 4 39.122 118.048 5.696 1 22.92 ? N9 ADP 806 A 1 HETATM 19 C C8 ADP . . . G 4 40.185 117.351 6.14 1 25.12 ? C8 ADP 806 A 1 HETATM 20 N N7 ADP . . . G 4 41.282 118.122 6.239 1 21.18 ? N7 ADP 806 A 1 HETATM 21 C C5 ADP . . . G 4 40.907 119.358 5.878 1 23.13 ? C5 ADP 806 A 1 HETATM 22 C C6 ADP . . . G 4 41.593 120.657 5.771 1 25.34 ? C6 ADP 806 A 1 HETATM 23 N N6 ADP . . . G 4 42.921 120.757 6.091 1 26.42 ? N6 ADP 806 A 1 HETATM 24 N N1 ADP . . . G 4 40.856 121.701 5.34 1 22.38 ? N1 ADP 806 A 1 HETATM 25 C C2 ADP . . . G 4 39.553 121.594 5.01 1 27.53 ? C2 ADP 806 A 1 HETATM 26 N N3 ADP . . . G 4 38.868 120.439 5.084 1 25.87 ? N3 ADP 806 A 1 HETATM 27 C C4 ADP . . . G 4 39.485 119.314 5.524 1 22.41 ? C4 ADP 806 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #