data_6G2W # _model_server_result.job_id 1vBpDijQK8EcpXb-vyH9RQ _model_server_result.datetime_utc '2024-10-18 16:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":809}' # _entry.id 6G2W # _exptl.entry_id 6G2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.273 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(4-fluorophenyl)-4-methyl-piperazine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G2W _cell.length_a 92.103 _cell.length_b 92.103 _cell.length_c 65.863 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 166 A ASN 624 1_555 I NA NA . A NA 808 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 H O3B ADP . A ADP 807 1_555 I NA NA . A NA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? # _chem_comp.formula 'C12 H16 F N3 O' _chem_comp.formula_weight 237.273 _chem_comp.id AWD _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(4-fluorophenyl)-4-methyl-piperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C10 AWD sing 114 n n C11 C10 AWD doub 115 n y C11 C12 AWD sing 116 n y C10 C9 AWD sing 117 n y C12 C7 AWD doub 118 n y C9 C8 AWD doub 119 n y C7 C8 AWD sing 120 n y C7 N3 AWD sing 121 n n N3 C6 AWD sing 122 n n C4 C5 AWD sing 123 n n C4 N2 AWD sing 124 n n C5 N1 AWD sing 125 n n C6 N2 AWD sing 126 n n C6 O1 AWD doub 127 n n N2 C3 AWD sing 128 n n C3 C2 AWD sing 129 n n N1 C1 AWD sing 130 n n N1 C2 AWD sing 131 n n N3 H2 AWD sing 132 n n C4 H3 AWD sing 133 n n C4 H4 AWD sing 134 n n C5 H5 AWD sing 135 n n C5 H6 AWD sing 136 n n C8 H7 AWD sing 137 n n C1 H8 AWD sing 138 n n C1 H9 AWD sing 139 n n C1 H10 AWD sing 140 n n C2 H11 AWD sing 141 n n C2 H12 AWD sing 142 n n C3 H13 AWD sing 143 n n C3 H14 AWD sing 144 n n C9 H15 AWD sing 145 n n C11 H16 AWD sing 146 n n C12 H17 AWD sing 147 n n # _atom_sites.entry_id 6G2W _atom_sites.fract_transf_matrix[1][1] 0.010857 _atom_sites.fract_transf_matrix[1][2] 0.006269 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 801 1 MPD MPD . C 2 MPD A 1 802 2 MPD MPD . D 2 MPD A 1 803 3 MPD MPD . E 2 MPD A 1 804 4 MPD MPD . F 3 DMS A 1 805 5 DMS DMS . G 3 DMS A 1 806 6 DMS DMS . H 4 ADP A 1 807 9 ADP ADP . I 5 NA A 1 808 10 NA NA . J 6 AWD A 1 809 1 AWD LIG . K 7 HOH A 1 901 10 HOH HOH . K 7 HOH A 2 902 8 HOH HOH . K 7 HOH A 3 903 9 HOH HOH . K 7 HOH A 4 904 5 HOH HOH . K 7 HOH A 5 905 4 HOH HOH . K 7 HOH A 6 906 7 HOH HOH . K 7 HOH A 7 907 3 HOH HOH . K 7 HOH A 8 908 2 HOH HOH . K 7 HOH A 9 909 1 HOH HOH . K 7 HOH A 10 910 6 HOH HOH . K 7 HOH A 11 911 12 HOH HOH . K 7 HOH A 12 912 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AWD . . . J 6 0.856 -21.634 -8.065 1 93.61 1 N1 AWD 809 A 1 HETATM 2 N N3 AWD . . . J 6 3.593 -25.909 -8.747 1 58.29 ? N3 AWD 809 A 1 HETATM 3 C C4 AWD . . . J 6 3.037 -22.106 -9.143 1 84.47 ? C4 AWD 809 A 1 HETATM 4 C C5 AWD . . . J 6 2.257 -21.281 -8.093 1 88.49 ? C5 AWD 809 A 1 HETATM 5 C C6 AWD . . . J 6 3.943 -24.481 -8.896 1 69.74 ? C6 AWD 809 A 1 HETATM 6 C C7 AWD . . . J 6 4.636 -26.953 -8.659 1 57.52 ? C7 AWD 809 A 1 HETATM 7 C C8 AWD . . . J 6 4.299 -28.256 -8.859 1 53.29 ? C8 AWD 809 A 1 HETATM 8 C C10 AWD . . . J 6 6.571 -28.93 -8.455 1 51.03 ? C10 AWD 809 A 1 HETATM 9 C C1 AWD . . . J 6 0.187 -20.877 -6.943 1 88.17 ? C1 AWD 809 A 1 HETATM 10 C C2 AWD . . . J 6 0.621 -23.036 -7.926 1 84.39 ? C2 AWD 809 A 1 HETATM 11 C C3 AWD . . . J 6 1.44 -23.915 -8.911 1 71.89 ? C3 AWD 809 A 1 HETATM 12 N N2 AWD . . . J 6 2.843 -23.529 -8.988 1 79.39 ? N2 AWD 809 A 1 HETATM 13 O O1 AWD . . . J 6 5.115 -24.069 -8.976 1 67.01 ? O1 AWD 809 A 1 HETATM 14 C C9 AWD . . . J 6 5.308 -29.283 -8.745 1 50.5 ? C9 AWD 809 A 1 HETATM 15 C C11 AWD . . . J 6 6.929 -27.601 -8.267 1 49.97 ? C11 AWD 809 A 1 HETATM 16 C C12 AWD . . . J 6 5.923 -26.62 -8.369 1 57.2 ? C12 AWD 809 A 1 HETATM 17 F F1 AWD . . . J 6 7.557 -29.867 -8.343 1 57.35 ? F1 AWD 809 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #