data_6G2X # _model_server_result.job_id BaHX-GQjw09OOsbu5VcG2A _model_server_result.datetime_utc '2024-11-05 09:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6G2X # _exptl.entry_id 6G2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G2X _cell.length_a 93.282 _cell.length_b 93.282 _cell.length_c 65.997 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 166 A ASN 624 1_555 K NA NA . A NA 810 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 J O3B ADP . A ADP 809 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc3 K NA NA . A NA 810 1_555 L O HOH . A HOH 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 322 n n C1 H11 MPD sing 323 n n C1 H12 MPD sing 324 n n C1 H13 MPD sing 325 n n C2 O2 MPD sing 326 n n C2 CM MPD sing 327 n n C2 C3 MPD sing 328 n n O2 HO2 MPD sing 329 n n CM HM1 MPD sing 330 n n CM HM2 MPD sing 331 n n CM HM3 MPD sing 332 n n C3 C4 MPD sing 333 n n C3 H31 MPD sing 334 n n C3 H32 MPD sing 335 n n C4 O4 MPD sing 336 n n C4 C5 MPD sing 337 n n C4 H4 MPD sing 338 n n O4 HO4 MPD sing 339 n n C5 H51 MPD sing 340 n n C5 H52 MPD sing 341 n n C5 H53 MPD sing 342 n n # _atom_sites.entry_id 6G2X _atom_sites.fract_transf_matrix[1][1] 0.01072 _atom_sites.fract_transf_matrix[1][2] 0.006189 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 801 1 MPD MPD . C 2 MPD A 1 802 2 MPD MPD . D 2 MPD A 1 803 3 MPD MPD . E 2 MPD A 1 804 4 MPD MPD . F 3 DMS A 1 805 5 DMS DMS . G 3 DMS A 1 806 6 DMS DMS . H 4 EJQ A 1 807 7 EJQ LIG . I 4 EJQ A 1 808 8 EJQ LIG . J 5 ADP A 1 809 9 ADP ADP . K 6 NA A 1 810 10 NA NA . L 7 HOH A 1 901 77 HOH HOH . L 7 HOH A 2 902 78 HOH HOH . L 7 HOH A 3 903 60 HOH HOH . L 7 HOH A 4 904 64 HOH HOH . L 7 HOH A 5 905 76 HOH HOH . L 7 HOH A 6 906 28 HOH HOH . L 7 HOH A 7 907 69 HOH HOH . L 7 HOH A 8 908 18 HOH HOH . L 7 HOH A 9 909 25 HOH HOH . L 7 HOH A 10 910 34 HOH HOH . L 7 HOH A 11 911 74 HOH HOH . L 7 HOH A 12 912 21 HOH HOH . L 7 HOH A 13 913 12 HOH HOH . L 7 HOH A 14 914 11 HOH HOH . L 7 HOH A 15 915 47 HOH HOH . L 7 HOH A 16 916 36 HOH HOH . L 7 HOH A 17 917 32 HOH HOH . L 7 HOH A 18 918 22 HOH HOH . L 7 HOH A 19 919 10 HOH HOH . L 7 HOH A 20 920 7 HOH HOH . L 7 HOH A 21 921 27 HOH HOH . L 7 HOH A 22 922 20 HOH HOH . L 7 HOH A 23 923 3 HOH HOH . L 7 HOH A 24 924 46 HOH HOH . L 7 HOH A 25 925 1 HOH HOH . L 7 HOH A 26 926 44 HOH HOH . L 7 HOH A 27 927 6 HOH HOH . L 7 HOH A 28 928 45 HOH HOH . L 7 HOH A 29 929 51 HOH HOH . L 7 HOH A 30 930 4 HOH HOH . L 7 HOH A 31 931 2 HOH HOH . L 7 HOH A 32 932 71 HOH HOH . L 7 HOH A 33 933 48 HOH HOH . L 7 HOH A 34 934 43 HOH HOH . L 7 HOH A 35 935 38 HOH HOH . L 7 HOH A 36 936 37 HOH HOH . L 7 HOH A 37 937 54 HOH HOH . L 7 HOH A 38 938 41 HOH HOH . L 7 HOH A 39 939 42 HOH HOH . L 7 HOH A 40 940 70 HOH HOH . L 7 HOH A 41 941 19 HOH HOH . L 7 HOH A 42 942 29 HOH HOH . L 7 HOH A 43 943 8 HOH HOH . L 7 HOH A 44 944 63 HOH HOH . L 7 HOH A 45 945 9 HOH HOH . L 7 HOH A 46 946 40 HOH HOH . L 7 HOH A 47 947 68 HOH HOH . L 7 HOH A 48 948 50 HOH HOH . L 7 HOH A 49 949 35 HOH HOH . L 7 HOH A 50 950 31 HOH HOH . L 7 HOH A 51 951 66 HOH HOH . L 7 HOH A 52 952 23 HOH HOH . L 7 HOH A 53 953 49 HOH HOH . L 7 HOH A 54 954 5 HOH HOH . L 7 HOH A 55 955 56 HOH HOH . L 7 HOH A 56 956 65 HOH HOH . L 7 HOH A 57 957 13 HOH HOH . L 7 HOH A 58 958 17 HOH HOH . L 7 HOH A 59 959 59 HOH HOH . L 7 HOH A 60 960 30 HOH HOH . L 7 HOH A 61 961 58 HOH HOH . L 7 HOH A 62 962 33 HOH HOH . L 7 HOH A 63 963 62 HOH HOH . L 7 HOH A 64 964 15 HOH HOH . L 7 HOH A 65 965 24 HOH HOH . L 7 HOH A 66 966 72 HOH HOH . L 7 HOH A 67 967 26 HOH HOH . L 7 HOH A 68 968 14 HOH HOH . L 7 HOH A 69 969 73 HOH HOH . L 7 HOH A 70 970 53 HOH HOH . L 7 HOH A 71 971 57 HOH HOH . L 7 HOH A 72 972 39 HOH HOH . L 7 HOH A 73 973 52 HOH HOH . L 7 HOH A 74 974 67 HOH HOH . L 7 HOH A 75 975 61 HOH HOH . L 7 HOH A 76 976 55 HOH HOH . L 7 HOH A 77 977 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 -23.057 -50.77 2.042 1 55.04 ? C1 MPD 801 A 1 HETATM 2 C C2 MPD . . . B 2 -24.325 -51.117 2.77 1 55.8 ? C2 MPD 801 A 1 HETATM 3 O O2 MPD . . . B 2 -25.446 -50.718 2.022 1 54.69 ? O2 MPD 801 A 1 HETATM 4 C CM MPD . . . B 2 -24.375 -52.605 2.948 1 49.1 ? CM MPD 801 A 1 HETATM 5 C C3 MPD . . . B 2 -24.45 -50.373 4.068 1 61.39 ? C3 MPD 801 A 1 HETATM 6 C C4 MPD . . . B 2 -23.244 -50.404 4.955 1 55.41 ? C4 MPD 801 A 1 HETATM 7 O O4 MPD . . . B 2 -23.472 -49.435 5.989 1 59.16 ? O4 MPD 801 A 1 HETATM 8 C C5 MPD . . . B 2 -23.013 -51.812 5.496 1 54.55 ? C5 MPD 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #