data_6G2Z
#
_model_server_result.job_id            m-dDMt4s9-OhbOsDH39SUQ 
_model_server_result.datetime_utc      '2024-11-08 04:14:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6g2z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    6G2Z 
#
_exptl.entry_id    6G2Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6G2Z 
_cell.length_a            92.389 
_cell.length_b            92.389 
_cell.length_c            65.988 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6G2Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 166 A ASN 624 1_555 I NA NA . A NA 808 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc2 H O3B ADP . A ADP 807 1_555 I NA NA . A NA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 315 n n 
C1 H11 MPD sing 316 n n 
C1 H12 MPD sing 317 n n 
C1 H13 MPD sing 318 n n 
C2 O2 MPD sing 319 n n 
C2 CM MPD sing 320 n n 
C2 C3 MPD sing 321 n n 
O2 HO2 MPD sing 322 n n 
CM HM1 MPD sing 323 n n 
CM HM2 MPD sing 324 n n 
CM HM3 MPD sing 325 n n 
C3 C4 MPD sing 326 n n 
C3 H31 MPD sing 327 n n 
C3 H32 MPD sing 328 n n 
C4 O4 MPD sing 329 n n 
C4 C5 MPD sing 330 n n 
C4 H4 MPD sing 331 n n 
O4 HO4 MPD sing 332 n n 
C5 H51 MPD sing 333 n n 
C5 H52 MPD sing 334 n n 
C5 H53 MPD sing 335 n n 
#
_atom_sites.entry_id                     6G2Z 
_atom_sites.fract_transf_matrix[1][1]    0.010824 
_atom_sites.fract_transf_matrix[1][2]    0.006249 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012498 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015154 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPD A 1 801 1 MPD MPD . 
C 2 MPD A 1 802 2 MPD MPD . 
D 2 MPD A 1 803 3 MPD MPD . 
E 2 MPD A 1 804 4 MPD MPD . 
F 3 DMS A 1 805 5 DMS DMS . 
G 3 DMS A 1 806 6 DMS DMS . 
H 4 ADP A 1 807 9 ADP ADP . 
I 5 NA A 1 808 10 NA NA . 
J 6 EJW A 1 809 1 EJW LIG . 
K 7 HOH A 1 901 49 HOH HOH . 
K 7 HOH A 2 902 14 HOH HOH . 
K 7 HOH A 3 903 41 HOH HOH . 
K 7 HOH A 4 904 20 HOH HOH . 
K 7 HOH A 5 905 27 HOH HOH . 
K 7 HOH A 6 906 24 HOH HOH . 
K 7 HOH A 7 907 13 HOH HOH . 
K 7 HOH A 8 908 23 HOH HOH . 
K 7 HOH A 9 909 16 HOH HOH . 
K 7 HOH A 10 910 8 HOH HOH . 
K 7 HOH A 11 911 25 HOH HOH . 
K 7 HOH A 12 912 39 HOH HOH . 
K 7 HOH A 13 913 33 HOH HOH . 
K 7 HOH A 14 914 42 HOH HOH . 
K 7 HOH A 15 915 1 HOH HOH . 
K 7 HOH A 16 916 11 HOH HOH . 
K 7 HOH A 17 917 9 HOH HOH . 
K 7 HOH A 18 918 7 HOH HOH . 
K 7 HOH A 19 919 4 HOH HOH . 
K 7 HOH A 20 920 15 HOH HOH . 
K 7 HOH A 21 921 38 HOH HOH . 
K 7 HOH A 22 922 18 HOH HOH . 
K 7 HOH A 23 923 35 HOH HOH . 
K 7 HOH A 24 924 6 HOH HOH . 
K 7 HOH A 25 925 2 HOH HOH . 
K 7 HOH A 26 926 29 HOH HOH . 
K 7 HOH A 27 927 3 HOH HOH . 
K 7 HOH A 28 928 37 HOH HOH . 
K 7 HOH A 29 929 34 HOH HOH . 
K 7 HOH A 30 930 36 HOH HOH . 
K 7 HOH A 31 931 22 HOH HOH . 
K 7 HOH A 32 932 10 HOH HOH . 
K 7 HOH A 33 933 28 HOH HOH . 
K 7 HOH A 34 934 19 HOH HOH . 
K 7 HOH A 35 935 48 HOH HOH . 
K 7 HOH A 36 936 31 HOH HOH . 
K 7 HOH A 37 937 12 HOH HOH . 
K 7 HOH A 38 938 32 HOH HOH . 
K 7 HOH A 39 939 21 HOH HOH . 
K 7 HOH A 40 940 5 HOH HOH . 
K 7 HOH A 41 941 26 HOH HOH . 
K 7 HOH A 42 942 44 HOH HOH . 
K 7 HOH A 43 943 17 HOH HOH . 
K 7 HOH A 44 944 47 HOH HOH . 
K 7 HOH A 45 945 40 HOH HOH . 
K 7 HOH A 46 946 45 HOH HOH . 
K 7 HOH A 47 947 30 HOH HOH . 
K 7 HOH A 48 948 43 HOH HOH . 
K 7 HOH A 49 949 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 2 129.722 40.262 15.302 1 58.23 ? C1 MPD 803 A 1 
HETATM 2 C C2 MPD . . . D 2 128.478 39.403 15.104 1 57.71 ? C2 MPD 803 A 1 
HETATM 3 O O2 MPD . . . D 2 127.293 40.228 15.25 1 72.95 ? O2 MPD 803 A 1 
HETATM 4 C CM MPD . . . D 2 128.461 38.8 13.709 1 52.14 ? CM MPD 803 A 1 
HETATM 5 C C3 MPD . . . D 2 128.45 38.291 16.145 1 77.87 ? C3 MPD 803 A 1 
HETATM 6 C C4 MPD . . . D 2 127.12 38.172 16.884 1 81.51 ? C4 MPD 803 A 1 
HETATM 7 O O4 MPD . . . D 2 126.93 36.827 17.271 1 65.97 ? O4 MPD 803 A 1 
HETATM 8 C C5 MPD . . . D 2 127.083 39.059 18.123 1 54.75 ? C5 MPD 803 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#