data_6G2Z
#
_model_server_result.job_id            SRPMSW_2nYdW8jw_x0TDpQ 
_model_server_result.datetime_utc      '2024-11-08 03:38:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6g2z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":807}' 
#
_entry.id    6G2Z 
#
_exptl.entry_id    6G2Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6G2Z 
_cell.length_a            92.389 
_cell.length_b            92.389 
_cell.length_c            65.988 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6G2Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 166 A ASN 624 1_555 I NA NA . A NA 808 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc2 H O3B ADP . A ADP 807 1_555 I NA NA . A NA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6G2Z 
_atom_sites.fract_transf_matrix[1][1]    0.010824 
_atom_sites.fract_transf_matrix[1][2]    0.006249 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012498 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015154 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPD A 1 801 1 MPD MPD . 
C 2 MPD A 1 802 2 MPD MPD . 
D 2 MPD A 1 803 3 MPD MPD . 
E 2 MPD A 1 804 4 MPD MPD . 
F 3 DMS A 1 805 5 DMS DMS . 
G 3 DMS A 1 806 6 DMS DMS . 
H 4 ADP A 1 807 9 ADP ADP . 
I 5 NA A 1 808 10 NA NA . 
J 6 EJW A 1 809 1 EJW LIG . 
K 7 HOH A 1 901 49 HOH HOH . 
K 7 HOH A 2 902 14 HOH HOH . 
K 7 HOH A 3 903 41 HOH HOH . 
K 7 HOH A 4 904 20 HOH HOH . 
K 7 HOH A 5 905 27 HOH HOH . 
K 7 HOH A 6 906 24 HOH HOH . 
K 7 HOH A 7 907 13 HOH HOH . 
K 7 HOH A 8 908 23 HOH HOH . 
K 7 HOH A 9 909 16 HOH HOH . 
K 7 HOH A 10 910 8 HOH HOH . 
K 7 HOH A 11 911 25 HOH HOH . 
K 7 HOH A 12 912 39 HOH HOH . 
K 7 HOH A 13 913 33 HOH HOH . 
K 7 HOH A 14 914 42 HOH HOH . 
K 7 HOH A 15 915 1 HOH HOH . 
K 7 HOH A 16 916 11 HOH HOH . 
K 7 HOH A 17 917 9 HOH HOH . 
K 7 HOH A 18 918 7 HOH HOH . 
K 7 HOH A 19 919 4 HOH HOH . 
K 7 HOH A 20 920 15 HOH HOH . 
K 7 HOH A 21 921 38 HOH HOH . 
K 7 HOH A 22 922 18 HOH HOH . 
K 7 HOH A 23 923 35 HOH HOH . 
K 7 HOH A 24 924 6 HOH HOH . 
K 7 HOH A 25 925 2 HOH HOH . 
K 7 HOH A 26 926 29 HOH HOH . 
K 7 HOH A 27 927 3 HOH HOH . 
K 7 HOH A 28 928 37 HOH HOH . 
K 7 HOH A 29 929 34 HOH HOH . 
K 7 HOH A 30 930 36 HOH HOH . 
K 7 HOH A 31 931 22 HOH HOH . 
K 7 HOH A 32 932 10 HOH HOH . 
K 7 HOH A 33 933 28 HOH HOH . 
K 7 HOH A 34 934 19 HOH HOH . 
K 7 HOH A 35 935 48 HOH HOH . 
K 7 HOH A 36 936 31 HOH HOH . 
K 7 HOH A 37 937 12 HOH HOH . 
K 7 HOH A 38 938 32 HOH HOH . 
K 7 HOH A 39 939 21 HOH HOH . 
K 7 HOH A 40 940 5 HOH HOH . 
K 7 HOH A 41 941 26 HOH HOH . 
K 7 HOH A 42 942 44 HOH HOH . 
K 7 HOH A 43 943 17 HOH HOH . 
K 7 HOH A 44 944 47 HOH HOH . 
K 7 HOH A 45 945 40 HOH HOH . 
K 7 HOH A 46 946 45 HOH HOH . 
K 7 HOH A 47 947 30 HOH HOH . 
K 7 HOH A 48 948 43 HOH HOH . 
K 7 HOH A 49 949 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . H 4 121.976 19.161 1.228 1 38.86 ? PB ADP 807 A 1 
HETATM 2 O O1B ADP . . . H 4 121.993 18.785 -0.232 1 41.48 ? O1B ADP 807 A 1 
HETATM 3 O O2B ADP . . . H 4 123.15 18.623 2.012 1 41.08 ? O2B ADP 807 A 1 
HETATM 4 O O3B ADP . . . H 4 120.639 18.962 1.905 1 44.4 ? O3B ADP 807 A 1 
HETATM 5 P PA ADP . . . H 4 122.509 21.764 0.069 1 39.6 ? PA ADP 807 A 1 
HETATM 6 O O1A ADP . . . H 4 121.321 21.904 -0.86 1 40.98 ? O1A ADP 807 A 1 
HETATM 7 O O2A ADP . . . H 4 123.828 21.397 -0.54 1 36.68 ? O2A ADP 807 A 1 
HETATM 8 O O3A ADP . . . H 4 122.205 20.759 1.297 1 37.36 ? O3A ADP 807 A 1 
HETATM 9 O O5' ADP . . . H 4 122.719 23.158 0.859 1 34.64 ? O5' ADP 807 A 1 
HETATM 10 C C5' ADP . . . H 4 121.587 24.014 1.062 1 35.37 ? C5' ADP 807 A 1 
HETATM 11 C C4' ADP . . . H 4 122.029 25.472 1.185 1 34.2 ? C4' ADP 807 A 1 
HETATM 12 O O4' ADP . . . H 4 122.71 25.685 2.422 1 39.79 ? O4' ADP 807 A 1 
HETATM 13 C C3' ADP . . . H 4 123.003 25.884 0.088 1 42.43 ? C3' ADP 807 A 1 
HETATM 14 O O3' ADP . . . H 4 122.307 26.443 -1.023 1 45.61 ? O3' ADP 807 A 1 
HETATM 15 C C2' ADP . . . H 4 123.843 26.94 0.767 1 40.74 ? C2' ADP 807 A 1 
HETATM 16 O O2' ADP . . . H 4 123.156 28.196 0.795 1 42.93 ? O2' ADP 807 A 1 
HETATM 17 C C1' ADP . . . H 4 123.889 26.464 2.197 1 34.97 ? C1' ADP 807 A 1 
HETATM 18 N N9 ADP . . . H 4 125.051 25.57 2.425 1 33.23 ? N9 ADP 807 A 1 
HETATM 19 C C8 ADP . . . H 4 124.966 24.295 2.858 1 36.12 ? C8 ADP 807 A 1 
HETATM 20 N N7 ADP . . . H 4 126.196 23.743 2.992 1 32.36 ? N7 ADP 807 A 1 
HETATM 21 C C5 ADP . . . H 4 127.097 24.681 2.655 1 32.23 ? C5 ADP 807 A 1 
HETATM 22 C C6 ADP . . . H 4 128.572 24.751 2.585 1 35.33 ? C6 ADP 807 A 1 
HETATM 23 N N6 ADP . . . H 4 129.338 23.68 2.919 1 35.45 ? N6 ADP 807 A 1 
HETATM 24 N N1 ADP . . . H 4 129.123 25.918 2.172 1 34.2 ? N1 ADP 807 A 1 
HETATM 25 C C2 ADP . . . H 4 128.365 26.983 1.844 1 38.58 ? C2 ADP 807 A 1 
HETATM 26 N N3 ADP . . . H 4 127.023 26.988 1.893 1 39.19 ? N3 ADP 807 A 1 
HETATM 27 C C4 ADP . . . H 4 126.34 25.887 2.286 1 34.34 ? C4 ADP 807 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#