data_6G30 # _model_server_result.job_id nS8RZpjJo7kHP5SmdqNFDA _model_server_result.datetime_utc '2024-11-22 17:02:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 6G30 # _exptl.entry_id 6G30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G30 _cell.length_a 94.761 _cell.length_b 94.761 _cell.length_c 66.368 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 308 n n C1 H11 MPD sing 309 n n C1 H12 MPD sing 310 n n C1 H13 MPD sing 311 n n C2 O2 MPD sing 312 n n C2 CM MPD sing 313 n n C2 C3 MPD sing 314 n n O2 HO2 MPD sing 315 n n CM HM1 MPD sing 316 n n CM HM2 MPD sing 317 n n CM HM3 MPD sing 318 n n C3 C4 MPD sing 319 n n C3 H31 MPD sing 320 n n C3 H32 MPD sing 321 n n C4 O4 MPD sing 322 n n C4 C5 MPD sing 323 n n C4 H4 MPD sing 324 n n O4 HO4 MPD sing 325 n n C5 H51 MPD sing 326 n n C5 H52 MPD sing 327 n n C5 H53 MPD sing 328 n n # _atom_sites.entry_id 6G30 _atom_sites.fract_transf_matrix[1][1] 0.010553 _atom_sites.fract_transf_matrix[1][2] 0.006093 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 801 1 MPD MPD . C 2 MPD A 1 802 2 MPD MPD . D 2 MPD A 1 803 3 MPD MPD . E 2 MPD A 1 804 4 MPD MPD . F 3 DMS A 1 805 5 DMS DMS . G 3 DMS A 1 806 6 DMS DMS . H 4 ADP A 1 807 9 ADP ADP . I 5 NA A 1 808 10 NA NA . J 6 ELN A 1 809 1 ELN LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 2 7.65 -41.996 19.462 1 95.23 ? C1 MPD 804 A 1 HETATM 2 C C2 MPD . . . E 2 8.833 -42.89 19.833 1 103 ? C2 MPD 804 A 1 HETATM 3 O O2 MPD . . . E 2 9.06 -43.815 18.734 1 117.29 ? O2 MPD 804 A 1 HETATM 4 C CM MPD . . . E 2 10.08 -42.028 19.977 1 95.61 ? CM MPD 804 A 1 HETATM 5 C C3 MPD . . . E 2 8.545 -43.646 21.139 1 104.4 ? C3 MPD 804 A 1 HETATM 6 C C4 MPD . . . E 2 8.654 -45.178 21.12 1 112.07 ? C4 MPD 804 A 1 HETATM 7 O O4 MPD . . . E 2 9.704 -45.596 21.979 1 108.33 ? O4 MPD 804 A 1 HETATM 8 C C5 MPD . . . E 2 7.363 -45.844 21.608 1 105.65 ? C5 MPD 804 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #